Wall clock time and date at job start Mon Mar 30 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99398 * 2 1 4 4 H 1.48505 * 109.46970 * 270.00066 * 3 2 1 5 5 H 1.48503 * 109.47460 * 29.99796 * 3 2 1 6 6 H 1.48497 * 109.47014 * 150.00285 * 3 2 1 7 7 C 1.38811 * 120.00434 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99573 * 163.07012 * 7 2 1 9 9 N 1.36937 * 119.99831 * 343.06453 * 7 2 1 10 10 C 1.46928 * 120.62966 * 331.83939 * 9 7 2 11 11 C 1.53187 * 108.77207 * 233.62741 * 10 9 7 12 12 C 1.53045 * 109.31879 * 305.36719 * 11 10 9 13 13 C 1.52996 * 109.46072 * 181.38657 * 12 11 10 14 14 N 1.46902 * 109.46984 * 175.00062 * 13 12 11 15 15 C 1.46893 * 111.00123 * 180.02562 * 14 13 12 16 16 C 1.53002 * 117.49879 * 223.62313 * 15 14 13 17 17 C 1.52998 * 60.00006 * 252.50899 * 16 15 14 18 18 C 1.53037 * 109.53407 * 61.36562 * 12 11 10 19 19 C 1.46925 * 120.62962 * 151.86272 * 9 7 2 20 20 H 0.96997 * 120.00941 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.58553 * 113.84333 * 10 9 7 22 22 H 1.08999 * 109.70919 * 353.48768 * 10 9 7 23 23 H 1.09009 * 109.49739 * 185.41887 * 11 10 9 24 24 H 1.09000 * 109.50231 * 65.32652 * 11 10 9 25 25 H 1.09002 * 109.45737 * 301.36168 * 12 11 10 26 26 H 1.08997 * 109.47249 * 55.00267 * 13 12 11 27 27 H 1.08998 * 109.47106 * 295.00313 * 13 12 11 28 28 H 1.00900 * 110.99885 * 56.04435 * 14 13 12 29 29 H 1.08995 * 115.55197 * 9.32455 * 15 14 13 30 30 H 1.09006 * 117.50047 * 359.97438 * 16 15 14 31 31 H 1.09001 * 117.49897 * 145.01811 * 16 15 14 32 32 H 1.09001 * 117.49752 * 252.50898 * 17 16 15 33 33 H 1.08995 * 117.52137 * 107.47905 * 17 16 15 34 34 H 1.08995 * 109.50020 * 58.58593 * 18 12 11 35 35 H 1.09003 * 109.49620 * 178.68691 * 18 12 11 36 36 H 1.09004 * 109.58344 * 246.16067 * 19 9 7 37 37 H 1.08999 * 109.58413 * 6.43662 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2223 -0.2718 9 7 1.3702 -2.3622 0.3465 10 6 0.2265 -2.3397 1.2685 11 6 0.4986 -3.3179 2.4155 12 6 0.8137 -4.6999 1.8383 13 6 1.0521 -5.6877 2.9821 14 7 1.2362 -7.0377 2.4328 15 6 1.4675 -8.0151 3.5047 16 6 2.5732 -9.0506 3.2900 17 6 1.1047 -9.4741 3.2207 18 6 2.0689 -4.6164 0.9668 19 6 1.8145 -3.6529 -0.1968 20 1 -0.4851 0.8399 0.0004 21 1 -0.6767 -2.6411 0.7377 22 1 0.0966 -1.3342 1.6687 23 1 -0.3819 -3.3829 3.0549 24 1 1.3482 -2.9656 3.0004 25 1 -0.0264 -5.0408 1.2332 26 1 0.1924 -5.6822 3.6521 27 1 1.9451 -5.3953 3.5345 28 1 1.9872 -7.0547 1.7592 29 1 1.3130 -7.6463 4.5186 30 1 3.1288 -9.0068 2.3532 31 1 3.1465 -9.3630 4.1628 32 1 0.7118 -10.0652 4.0480 33 1 0.6939 -9.7086 2.2387 34 1 2.9037 -4.2517 1.5651 35 1 2.3061 -5.6055 0.5749 36 1 1.0409 -4.0614 -0.8471 37 1 2.7337 -3.5130 -0.7657 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082645757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:24 Heat of formation + Delta-G solvation = 35.427775 kcal Electronic energy + Delta-G solvation = -15648.647785 eV Core-core repulsion = 13233.644983 eV Total energy + Delta-G solvation = -2415.002802 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.44642 -37.22033 -34.29570 -32.05959 -30.38653 -29.45580 -26.08304 -23.60670 -22.47903 -22.18005 -21.05494 -20.74606 -18.97456 -16.70373 -16.00768 -15.63475 -14.80189 -14.30839 -13.79181 -13.50315 -13.28887 -13.24496 -12.63395 -12.57588 -12.04650 -11.65501 -11.60074 -11.26455 -10.96538 -10.85514 -10.66351 -10.52184 -10.37256 -10.12599 -10.08224 -9.81615 -9.41241 -9.32319 -8.42069 -8.18566 -6.60318 -5.74159 -3.16226 3.39570 3.46438 3.49002 3.73487 4.09999 4.53460 4.81394 4.87789 5.06133 5.34567 5.36511 5.47026 5.50851 5.52246 5.56218 5.75714 5.80317 5.91335 6.01507 6.04502 6.21353 6.25764 6.42582 6.58917 6.68737 6.74735 6.89216 6.93803 7.03265 7.17461 7.41021 7.45280 7.72674 7.83626 8.50427 9.26761 9.90734 10.48207 11.34290 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.066297 B = 0.005274 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.242134 B = 5307.292790 C = 5428.069719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.078 4.078 13 C 0.066 3.934 14 N -0.660 5.660 15 C 0.025 3.975 16 C -0.210 4.210 17 C -0.174 4.174 18 C -0.128 4.128 19 C 0.146 3.854 20 H 0.253 0.747 21 H 0.017 0.983 22 H 0.086 0.914 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.343 0.657 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.017 0.983 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -13.740 6.704 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.081 0.919 9 N -0.316 5.316 10 C 0.046 3.954 11 C -0.174 4.174 12 C -0.097 4.097 13 C -0.063 4.063 14 N -0.290 5.290 15 C -0.086 4.086 16 C -0.249 4.249 17 C -0.213 4.213 18 C -0.167 4.167 19 C 0.020 3.980 20 H 0.063 0.937 21 H 0.035 0.965 22 H 0.104 0.896 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.164 0.836 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.995 -13.683 6.639 15.339 hybrid contribution 1.309 0.993 0.265 1.665 sum 3.304 -12.689 6.904 14.819 Atomic orbital electron populations 1.70034 1.05256 1.25405 1.54090 1.25033 0.95256 0.98341 1.01054 0.86328 0.79161 0.83783 0.77690 1.21426 1.21573 1.20549 1.19179 0.92498 0.84947 1.41495 0.91855 1.44046 1.35933 1.01475 1.50107 1.20746 0.88608 0.98052 0.87981 1.22199 0.99891 0.95386 0.99915 1.21068 0.98672 0.94430 0.95487 1.22146 0.99792 0.87042 0.97302 1.60281 1.48940 1.05700 1.14124 1.22430 1.01740 0.88883 0.95539 1.23414 0.92181 1.06162 1.03176 1.23097 0.97083 0.97785 1.03293 1.22055 0.97164 0.98553 0.98917 1.20871 0.97421 0.86968 0.92768 0.93695 0.96498 0.89619 0.93368 0.92913 0.91050 0.91365 0.95349 0.83603 0.87613 0.88796 0.89027 0.89013 0.88477 0.92776 0.93445 0.96530 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 11.19 55.49 0.62 -25.99 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -7.04 9.58 -15.06 -0.14 -7.18 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -15.19 2.99 -172.32 -0.52 -15.71 16 10 C 0.17 4.19 5.30 -3.71 -0.02 4.17 16 11 C -0.13 -2.60 5.36 -26.61 -0.14 -2.74 16 12 C -0.08 -1.33 2.36 -90.58 -0.21 -1.54 16 13 C 0.07 0.94 5.00 -3.83 -0.02 0.92 16 14 N -0.66 -8.68 6.78 -106.73 -0.72 -9.40 16 15 C 0.03 0.28 6.31 -67.72 -0.43 -0.14 16 16 C -0.21 -2.03 10.23 -26.73 -0.27 -2.30 16 17 C -0.17 -1.73 10.46 -26.73 -0.28 -2.01 16 18 C -0.13 -2.24 5.16 -26.61 -0.14 -2.38 16 19 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 20 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 23 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.34 4.39 6.74 -39.29 -0.26 4.13 16 29 H 0.11 1.14 7.90 -51.93 -0.41 0.73 16 30 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.72 6.62 -51.93 -0.34 0.37 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 LS Contribution 292.16 15.07 4.40 4.40 Total: -1.00 -29.27 292.16 -9.38 -38.64 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.36 Total: 1.31 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.77 Total: -10.13 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.62 Total: -51.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.27 -9.38 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.071 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds