Wall clock time and date at job start Mon Mar 30 2020 03:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00522 * 2 1 4 4 H 1.48497 * 109.46736 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47423 * 119.99750 * 3 2 1 6 6 H 1.48496 * 109.47321 * 240.00436 * 3 2 1 7 7 C 1.38816 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99984 * 203.11364 * 7 2 1 9 9 N 1.36940 * 119.99793 * 23.11611 * 7 2 1 10 10 C 1.46925 * 120.63104 * 33.70651 * 9 7 2 11 11 C 1.53192 * 108.77658 * 126.36762 * 10 9 7 12 12 C 1.53039 * 109.31346 * 54.63188 * 11 10 9 13 13 C 1.53036 * 109.53643 * 298.63741 * 12 11 10 14 14 C 1.46929 * 120.62806 * 213.41880 * 9 7 2 15 15 H 1.08999 * 109.58057 * 113.84506 * 14 9 7 16 16 C 1.53002 * 109.58627 * 353.42135 * 14 9 7 17 17 N 1.46904 * 109.46730 * 174.77590 * 16 14 9 18 18 C 1.46902 * 110.99613 * 183.27613 * 17 16 14 19 19 C 1.53005 * 117.49492 * 223.62110 * 18 17 16 20 20 C 1.53003 * 117.49530 * 154.99987 * 18 17 16 21 21 H 0.97001 * 120.00276 * 185.78396 * 1 2 3 22 22 H 1.09006 * 109.58407 * 246.15297 * 10 9 7 23 23 H 1.09002 * 109.58814 * 6.57705 * 10 9 7 24 24 H 1.09001 * 109.49636 * 174.58541 * 11 10 9 25 25 H 1.09005 * 109.49485 * 294.68009 * 11 10 9 26 26 H 1.09003 * 109.45734 * 58.65655 * 12 11 10 27 27 H 1.08993 * 109.46024 * 178.62743 * 12 11 10 28 28 H 1.09011 * 109.49516 * 181.32119 * 13 12 11 29 29 H 1.08999 * 109.49930 * 301.37462 * 13 12 11 30 30 H 1.08994 * 109.47252 * 294.77312 * 16 14 9 31 31 H 1.09004 * 109.46946 * 54.78131 * 16 14 9 32 32 H 1.00900 * 110.99837 * 307.22543 * 17 16 14 33 33 H 1.08999 * 115.54939 * 9.32943 * 18 17 16 34 34 H 1.09002 * 117.49512 * 359.97438 * 19 18 17 35 35 H 1.08994 * 117.49736 * 145.01876 * 19 18 17 36 36 H 1.08998 * 117.49343 * 214.97230 * 20 18 17 37 37 H 1.08994 * 117.49911 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7463 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0252 -1.2396 0.3677 9 7 1.4079 -2.3407 -0.4646 10 6 0.4429 -2.2787 -1.5708 11 6 0.8830 -3.2571 -2.6644 12 6 1.0543 -4.6513 -2.0571 13 6 2.1405 -4.6104 -0.9799 14 6 1.7190 -3.6482 0.1291 15 1 0.8356 -4.0402 0.6329 16 6 2.8617 -3.4959 1.1351 17 7 3.0871 -4.7771 1.8176 18 6 4.1267 -4.6490 2.8477 19 6 5.1751 -5.7599 2.9351 20 6 4.0941 -5.6417 4.0114 21 1 -0.4850 -0.8358 0.0847 22 1 -0.5468 -2.5568 -1.2084 23 1 0.4152 -1.2669 -1.9753 24 1 0.1257 -3.2919 -3.4476 25 1 1.8309 -2.9261 -3.0887 26 1 0.1125 -4.9714 -1.6112 27 1 1.3438 -5.3545 -2.8380 28 1 2.2784 -5.6087 -0.5642 29 1 3.0768 -4.2673 -1.4201 30 1 3.7700 -3.1986 0.6111 31 1 2.5999 -2.7341 1.8696 32 1 2.2291 -5.1325 2.2121 33 1 4.4520 -3.6312 3.0632 34 1 5.0932 -6.5859 2.2286 35 1 6.1906 -5.4731 3.2081 36 1 4.3985 -5.2771 4.9925 37 1 3.3011 -6.3895 4.0130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082646348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:56 Heat of formation + Delta-G solvation = 33.084368 kcal Electronic energy + Delta-G solvation = -16071.441012 eV Core-core repulsion = 13656.336592 eV Total energy + Delta-G solvation = -2415.104420 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.28103 -37.18843 -33.49243 -33.22487 -30.12075 -29.42968 -25.14495 -24.36946 -22.29956 -21.92094 -20.88324 -20.56243 -19.02041 -17.04668 -15.97876 -15.04513 -14.58499 -14.18147 -14.03247 -13.56777 -13.35999 -13.20045 -12.75623 -12.32855 -12.05084 -11.45792 -11.42471 -11.24354 -11.07223 -10.70390 -10.43427 -10.27332 -10.17210 -10.11062 -10.02173 -9.79346 -9.54396 -9.08231 -8.34606 -7.93443 -6.78956 -6.00866 -3.26180 3.48624 3.52499 3.70134 3.94884 4.25975 4.62273 5.03780 5.10608 5.27586 5.36856 5.50080 5.57986 5.68598 5.69250 5.74217 5.84817 5.93630 6.00347 6.13348 6.23339 6.26267 6.37798 6.41759 6.57308 6.64664 6.75057 6.79695 6.86890 7.01390 7.16075 7.28830 7.43576 7.66980 8.09338 8.62330 9.16737 9.87604 10.36395 11.23755 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.009328 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.788525 B = 3001.032295 C = 4004.242353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.021 4.021 3 Si 1.063 2.937 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.349 4.349 8 H 0.054 0.946 9 N -0.594 5.594 10 C 0.156 3.844 11 C -0.138 4.138 12 C -0.111 4.111 13 C -0.119 4.119 14 C 0.179 3.821 15 H 0.018 0.982 16 C 0.074 3.926 17 N -0.661 5.661 18 C 0.024 3.976 19 C -0.173 4.173 20 C -0.198 4.198 21 H 0.269 0.731 22 H 0.015 0.985 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.336 0.664 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.380 -9.452 2.304 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.224 4.224 3 Si 0.893 3.107 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.478 4.478 8 H 0.072 0.928 9 N -0.320 5.320 10 C 0.030 3.970 11 C -0.177 4.177 12 C -0.149 4.149 13 C -0.158 4.158 14 C 0.073 3.927 15 H 0.035 0.965 16 C -0.054 4.054 17 N -0.291 5.291 18 C -0.087 4.087 19 C -0.211 4.211 20 C -0.236 4.236 21 H 0.080 0.920 22 H 0.033 0.967 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.155 0.845 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.626 -7.984 1.754 9.923 hybrid contribution -0.251 -1.232 0.756 1.467 sum 5.375 -9.216 2.509 10.960 Atomic orbital electron populations 1.70761 1.06635 1.30387 1.47562 1.25897 0.96605 1.01540 0.98361 0.83560 0.74808 0.76185 0.76185 1.21117 1.22043 1.22009 1.19856 0.96328 0.87878 1.43773 0.92848 1.44075 1.50853 1.01895 1.35133 1.20886 0.90998 0.97953 0.87119 1.22075 1.00654 0.96321 0.98685 1.21422 0.98838 0.96825 0.97811 1.21829 0.97976 0.99194 0.96795 1.20245 0.93709 0.87284 0.91482 0.96457 1.22074 0.99168 0.87872 0.96319 1.60277 1.11130 1.29455 1.28269 1.22370 0.97898 0.94574 0.93851 1.23087 0.94387 1.02171 1.01463 1.23214 1.02777 1.03454 0.94174 0.92037 0.96711 0.91014 0.93469 0.92540 0.93141 0.93711 0.92376 0.92699 0.91093 0.93710 0.84491 0.88422 0.88558 0.89264 0.89115 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.35 12.63 55.49 0.70 -26.65 16 2 C -0.02 -0.60 4.70 -17.43 -0.08 -0.68 16 3 Si 1.06 25.24 29.98 -169.99 -5.10 20.15 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.35 -9.54 8.26 -15.06 -0.12 -9.66 16 8 H 0.05 1.46 6.51 -52.48 -0.34 1.12 16 9 N -0.59 -14.81 2.77 -165.02 -0.46 -15.27 16 10 C 0.16 3.71 4.75 -3.71 -0.02 3.70 16 11 C -0.14 -2.71 6.08 -26.61 -0.16 -2.88 16 12 C -0.11 -1.98 5.89 -26.69 -0.16 -2.14 16 13 C -0.12 -2.22 5.17 -26.84 -0.14 -2.36 16 14 C 0.18 3.80 3.06 -67.82 -0.21 3.59 16 15 H 0.02 0.39 8.13 -51.93 -0.42 -0.03 16 16 C 0.07 1.46 3.72 -3.82 -0.01 1.44 16 17 N -0.66 -10.64 6.36 -106.72 -0.68 -11.32 16 18 C 0.02 0.35 6.25 -67.71 -0.42 -0.08 16 19 C -0.17 -2.11 10.46 -26.72 -0.28 -2.39 16 20 C -0.20 -2.32 10.33 -26.73 -0.28 -2.60 16 21 H 0.27 8.14 6.83 -40.82 -0.28 7.86 16 22 H 0.01 0.36 7.85 -51.93 -0.41 -0.05 16 23 H 0.07 1.89 6.69 -51.93 -0.35 1.54 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.00 7.93 -51.92 -0.41 0.59 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.49 7.72 -51.93 -0.40 1.09 16 31 H 0.04 0.99 7.35 -51.93 -0.38 0.60 16 32 H 0.34 5.15 8.63 -39.29 -0.34 4.81 16 33 H 0.10 1.46 7.90 -51.93 -0.41 1.05 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 290.55 15.07 4.38 4.38 Total: -1.00 -28.89 290.55 -9.38 -38.27 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.34 Total: 4.49 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.88 Total: -14.05 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.44 Total: -53.23 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.10 Total: 20.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.89 -9.38 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.354 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds