Wall clock time and date at job start Mon Mar 30 2020 03:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00522 * 2 1 4 4 H 1.48497 * 109.46736 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47423 * 119.99750 * 3 2 1 6 6 H 1.48496 * 109.47321 * 240.00436 * 3 2 1 7 7 C 1.38816 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99984 * 203.11364 * 7 2 1 9 9 N 1.36940 * 119.99793 * 23.11611 * 7 2 1 10 10 C 1.46925 * 120.63104 * 33.70651 * 9 7 2 11 11 C 1.53192 * 108.77658 * 126.36762 * 10 9 7 12 12 C 1.53039 * 109.31346 * 54.63188 * 11 10 9 13 13 C 1.53036 * 109.53643 * 298.63741 * 12 11 10 14 14 C 1.46929 * 120.62806 * 213.41880 * 9 7 2 15 15 H 1.08999 * 109.58057 * 113.84506 * 14 9 7 16 16 C 1.53002 * 109.58627 * 353.42135 * 14 9 7 17 17 N 1.46904 * 109.46730 * 174.77590 * 16 14 9 18 18 C 1.46902 * 110.99613 * 183.27613 * 17 16 14 19 19 C 1.53005 * 117.49492 * 223.62110 * 18 17 16 20 20 C 1.53003 * 117.49530 * 154.99987 * 18 17 16 21 21 H 0.97001 * 120.00276 * 185.78396 * 1 2 3 22 22 H 1.09006 * 109.58407 * 246.15297 * 10 9 7 23 23 H 1.09002 * 109.58814 * 6.57705 * 10 9 7 24 24 H 1.09001 * 109.49636 * 174.58541 * 11 10 9 25 25 H 1.09005 * 109.49485 * 294.68009 * 11 10 9 26 26 H 1.09003 * 109.45734 * 58.65655 * 12 11 10 27 27 H 1.08993 * 109.46024 * 178.62743 * 12 11 10 28 28 H 1.09011 * 109.49516 * 181.32119 * 13 12 11 29 29 H 1.08999 * 109.49930 * 301.37462 * 13 12 11 30 30 H 1.08994 * 109.47252 * 294.77312 * 16 14 9 31 31 H 1.09004 * 109.46946 * 54.78131 * 16 14 9 32 32 H 1.00900 * 110.99837 * 307.22543 * 17 16 14 33 33 H 1.08999 * 115.54939 * 9.32943 * 18 17 16 34 34 H 1.09002 * 117.49512 * 359.97438 * 19 18 17 35 35 H 1.08994 * 117.49736 * 145.01876 * 19 18 17 36 36 H 1.08998 * 117.49343 * 214.97230 * 20 18 17 37 37 H 1.08994 * 117.49911 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7463 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0252 -1.2396 0.3677 9 7 1.4079 -2.3407 -0.4646 10 6 0.4429 -2.2787 -1.5708 11 6 0.8830 -3.2571 -2.6644 12 6 1.0543 -4.6513 -2.0571 13 6 2.1405 -4.6104 -0.9799 14 6 1.7190 -3.6482 0.1291 15 1 0.8356 -4.0402 0.6329 16 6 2.8617 -3.4959 1.1351 17 7 3.0871 -4.7771 1.8176 18 6 4.1267 -4.6490 2.8477 19 6 5.1751 -5.7599 2.9351 20 6 4.0941 -5.6417 4.0114 21 1 -0.4850 -0.8358 0.0847 22 1 -0.5468 -2.5568 -1.2084 23 1 0.4152 -1.2669 -1.9753 24 1 0.1257 -3.2919 -3.4476 25 1 1.8309 -2.9261 -3.0887 26 1 0.1125 -4.9714 -1.6112 27 1 1.3438 -5.3545 -2.8380 28 1 2.2784 -5.6087 -0.5642 29 1 3.0768 -4.2673 -1.4201 30 1 3.7700 -3.1986 0.6111 31 1 2.5999 -2.7341 1.8696 32 1 2.2291 -5.1325 2.2121 33 1 4.4520 -3.6312 3.0632 34 1 5.0932 -6.5859 2.2286 35 1 6.1906 -5.4731 3.2081 36 1 4.3985 -5.2771 4.9925 37 1 3.3011 -6.3895 4.0130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082646348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:56 Heat of formation + Delta-G solvation = 15.342162 kcal Electronic energy + Delta-G solvation = -16072.210372 eV Core-core repulsion = 13656.336592 eV Total energy + Delta-G solvation = -2415.873780 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.90082 -38.46185 -35.24189 -34.85004 -31.92645 -31.11127 -27.05875 -26.02862 -23.75354 -23.25763 -22.24139 -22.03831 -20.76891 -19.01066 -17.28225 -16.52827 -16.20108 -15.73606 -15.62844 -15.45961 -15.02088 -14.84231 -14.19881 -13.94373 -13.52358 -13.19584 -12.89970 -12.77774 -12.51330 -12.34209 -11.94879 -11.90904 -11.80550 -11.66283 -11.54908 -11.36190 -11.13494 -10.88572 -10.46041 -9.27153 -8.87485 -8.17870 -5.43629 1.55428 1.62837 1.81410 2.62465 2.89058 2.97863 3.25809 3.68422 3.94242 4.01709 4.10255 4.12241 4.15007 4.23459 4.36187 4.49770 4.57592 4.67851 4.70259 4.78344 4.82057 4.98334 5.03580 5.09505 5.15425 5.19293 5.29504 5.30387 5.33168 5.33867 5.61609 5.88695 6.06725 6.36915 6.42608 7.10528 7.79849 8.27613 9.01686 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.009328 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.788525 B = 3001.032295 C = 4004.242353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.075 4.075 3 Si 1.110 2.890 4 H -0.292 1.292 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.345 4.345 8 H 0.050 0.950 9 N -0.612 5.612 10 C 0.159 3.841 11 C -0.129 4.129 12 C -0.107 4.107 13 C -0.107 4.107 14 C 0.174 3.826 15 H 0.011 0.989 16 C 0.095 3.905 17 N -0.650 5.650 18 C -0.011 4.011 19 C -0.160 4.160 20 C -0.178 4.178 21 H 0.252 0.748 22 H 0.002 0.998 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.011 0.989 32 H 0.341 0.659 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 -11.213 2.305 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.271 4.271 3 Si 0.935 3.065 4 H -0.218 1.218 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.475 4.475 8 H 0.067 0.933 9 N -0.338 5.338 10 C 0.034 3.966 11 C -0.168 4.168 12 C -0.145 4.145 13 C -0.146 4.146 14 C 0.068 3.932 15 H 0.028 0.972 16 C -0.034 4.034 17 N -0.281 5.281 18 C -0.121 4.121 19 C -0.198 4.198 20 C -0.216 4.216 21 H 0.062 0.938 22 H 0.020 0.980 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.160 0.840 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.917 -9.790 1.759 12.115 hybrid contribution -0.631 -0.762 0.808 1.278 sum 6.286 -10.552 2.568 12.548 Atomic orbital electron populations 1.70886 1.07581 1.29329 1.50612 1.27194 0.96684 1.04864 0.98396 0.82919 0.73913 0.72419 0.77250 1.21804 1.20249 1.20634 1.20061 0.96113 0.88940 1.42435 0.93280 1.44344 1.50792 1.02702 1.35953 1.20778 0.90448 0.97321 0.88091 1.21954 1.00833 0.96294 0.97691 1.21418 0.98724 0.96037 0.98274 1.21697 0.97703 0.99180 0.96026 1.20436 0.93843 0.86182 0.92756 0.97171 1.21683 0.97666 0.88828 0.95270 1.60256 1.11761 1.26812 1.29275 1.22439 0.98956 0.95111 0.95618 1.23150 0.94878 1.00499 1.01321 1.23300 1.02475 1.01715 0.94070 0.93776 0.98018 0.94495 0.91038 0.93213 0.92686 0.90390 0.90191 0.93735 0.92648 0.97083 0.83997 0.89712 0.88469 0.87754 0.87551 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.32 12.63 21.65 0.27 -58.05 16 2 C -0.07 -4.30 4.70 84.86 0.40 -3.90 16 3 Si 1.11 51.72 29.98 68.60 2.06 53.78 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.35 -19.35 8.26 84.03 0.69 -18.66 16 8 H 0.05 2.76 6.51 -2.91 -0.02 2.74 16 9 N -0.61 -31.14 2.77 -676.01 -1.88 -33.01 16 10 C 0.16 7.72 4.75 86.36 0.41 8.13 16 11 C -0.13 -4.89 6.08 30.67 0.19 -4.70 16 12 C -0.11 -3.51 5.89 30.62 0.18 -3.33 16 13 C -0.11 -3.80 5.17 30.52 0.16 -3.64 16 14 C 0.17 7.35 3.06 44.83 0.14 7.48 16 15 H 0.01 0.47 8.13 -2.39 -0.02 0.45 16 16 C 0.09 3.79 3.72 86.30 0.32 4.11 16 17 N -0.65 -20.37 6.36 -491.54 -3.13 -23.50 16 18 C -0.01 -0.29 6.25 44.92 0.28 -0.01 16 19 C -0.16 -3.51 10.46 30.60 0.32 -3.19 16 20 C -0.18 -3.69 10.33 30.60 0.32 -3.38 16 21 H 0.25 15.99 6.83 -92.71 -0.63 15.36 16 22 H 0.00 0.09 7.85 -2.38 -0.02 0.07 16 23 H 0.04 2.01 6.69 -2.39 -0.02 2.00 16 24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.51 7.93 -2.38 -0.02 2.49 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 2.36 7.72 -2.39 -0.02 2.34 16 31 H 0.01 0.50 7.35 -2.38 -0.02 0.48 16 32 H 0.34 10.05 8.63 -89.69 -0.77 9.28 16 33 H 0.09 2.54 7.90 -2.39 -0.02 2.52 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -63.63 290.55 1.12 -62.50 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.39 Total: 19.36 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 3.40 Total: -21.08 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.73 Total: -114.56 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.06 Total: 53.78 kcal Total: -63.63 1.12 -62.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.845 kcal (2) G-P(sol) polarization free energy of solvation -63.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds