Wall clock time and date at job start Mon Mar 30 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00277 * 2 1 4 4 H 1.48503 * 109.47492 * 240.00424 * 3 2 1 5 5 H 1.48507 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47483 * 120.00163 * 3 2 1 7 7 C 1.38811 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00092 * 197.61418 * 7 2 1 9 9 N 1.36934 * 120.00293 * 17.88109 * 7 2 1 10 10 C 1.47082 * 120.87607 * 28.78069 * 9 7 2 11 11 C 1.53696 * 108.27756 * 128.75095 * 10 9 7 12 12 N 1.46903 * 109.25538 * 54.08430 * 11 10 9 13 13 C 1.46899 * 110.99932 * 172.60529 * 12 11 10 14 14 C 1.53003 * 109.46946 * 59.76320 * 13 12 11 15 15 C 1.53790 * 113.61040 * 271.81126 * 14 13 12 16 16 C 1.53957 * 87.01587 * 220.04894 * 15 14 13 17 17 C 1.53773 * 87.11214 * 25.36510 * 16 15 14 18 18 C 1.46898 * 111.26565 * 296.75496 * 12 11 10 19 19 C 1.47074 * 120.88875 * 209.05376 * 9 7 2 20 20 H 0.96999 * 120.00078 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.63139 * 248.52313 * 10 9 7 22 22 H 1.09004 * 109.63282 * 9.10046 * 10 9 7 23 23 H 1.09000 * 109.65002 * 294.07916 * 11 10 9 24 24 H 1.09004 * 109.44248 * 173.95611 * 11 10 9 25 25 H 1.09003 * 109.46947 * 179.75540 * 13 12 11 26 26 H 1.08997 * 109.47284 * 299.75738 * 13 12 11 27 27 H 1.08993 * 112.85317 * 43.00430 * 14 13 12 28 28 H 1.09000 * 113.61353 * 334.57094 * 15 14 13 29 29 H 1.09003 * 113.61300 * 105.47370 * 15 14 13 30 30 H 1.08997 * 113.53838 * 270.80970 * 16 15 14 31 31 H 1.09001 * 113.73848 * 139.95034 * 16 15 14 32 32 H 1.09002 * 113.61417 * 220.08785 * 17 16 15 33 33 H 1.08999 * 113.61720 * 89.18970 * 17 16 15 34 34 H 1.09004 * 109.49582 * 303.14667 * 18 12 11 35 35 H 1.08998 * 109.51545 * 183.07765 * 18 12 11 36 36 H 1.09007 * 109.62467 * 350.90348 * 19 9 7 37 37 H 1.09002 * 109.62459 * 111.28081 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0523 -1.2242 0.2825 9 7 1.3752 -2.3593 -0.3652 10 6 0.2517 -2.3369 -1.3142 11 6 0.5356 -3.3643 -2.4215 12 7 0.8059 -4.6727 -1.8106 13 6 0.9095 -5.7206 -2.8349 14 6 2.0469 -5.3798 -3.7999 15 6 1.6090 -4.4975 -4.9810 16 6 2.5271 -5.3628 -5.8634 17 6 2.3324 -6.4850 -4.8303 18 6 2.0138 -4.6314 -0.9756 19 6 1.7946 -3.6566 0.1862 20 1 -0.4850 0.8400 0.0004 21 1 -0.6708 -2.5982 -0.7957 22 1 0.1606 -1.3422 -1.7505 23 1 1.4022 -3.0477 -3.0018 24 1 -0.3325 -3.4411 -3.0763 25 1 1.1142 -6.6780 -2.3558 26 1 -0.0285 -5.7835 -3.3865 27 1 2.9394 -5.0162 -3.2908 28 1 0.5514 -4.5913 -5.2275 29 1 1.9344 -3.4607 -4.8957 30 1 3.5511 -4.9936 -5.9194 31 1 2.1059 -5.5923 -6.8422 32 1 3.2411 -7.0505 -4.6235 33 1 1.4730 -7.1233 -5.0356 34 1 2.8599 -4.2972 -1.5761 35 1 2.2182 -5.6269 -0.5815 36 1 2.7241 -3.5348 0.7425 37 1 1.0190 -4.0407 0.8489 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083838974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:06 Heat of formation + Delta-G solvation = 45.947221 kcal Electronic energy + Delta-G solvation = -16247.154268 eV Core-core repulsion = 13832.607623 eV Total energy + Delta-G solvation = -2414.546645 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43738 -37.15242 -34.12083 -31.28825 -29.88424 -28.14536 -25.63019 -25.39622 -23.33537 -22.47803 -21.44295 -19.44558 -18.70242 -16.63728 -15.80869 -14.98886 -14.76320 -14.37670 -14.21711 -13.47346 -13.46075 -13.06301 -12.65929 -12.40782 -12.15094 -11.85301 -11.34517 -11.11225 -11.03072 -10.74103 -10.69361 -10.52310 -10.38571 -10.16433 -10.00958 -9.85909 -9.70406 -9.48992 -8.45228 -7.62174 -6.57911 -5.74447 -3.16727 3.40319 3.45963 3.47249 4.47263 4.54382 4.71145 4.79221 4.88683 4.94803 5.42150 5.50067 5.56845 5.57993 5.75082 5.77192 5.79789 5.88687 6.01168 6.05004 6.07920 6.16389 6.26321 6.34704 6.37719 6.48013 6.58233 6.63441 6.77674 7.01241 7.29654 7.68577 7.74378 7.79408 7.88578 8.49176 9.25664 9.89172 10.49917 11.34253 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.037495 B = 0.007304 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.578546 B = 3832.744458 C = 4103.563985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.254 4.254 8 H 0.063 0.937 9 N -0.594 5.594 10 C 0.179 3.821 11 C 0.036 3.964 12 N -0.531 5.531 13 C 0.064 3.936 14 C -0.146 4.146 15 C -0.133 4.133 16 C -0.144 4.144 17 C -0.134 4.134 18 C 0.043 3.957 19 C 0.148 3.852 20 H 0.254 0.746 21 H 0.025 0.975 22 H 0.080 0.920 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 -10.729 -8.752 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.093 4.093 12 N -0.254 5.254 13 C -0.064 4.064 14 C -0.166 4.166 15 C -0.171 4.171 16 C -0.181 4.181 17 C -0.172 4.172 18 C -0.086 4.086 19 C 0.021 3.979 20 H 0.064 0.936 21 H 0.044 0.956 22 H 0.099 0.901 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.491 -10.669 -8.406 13.809 hybrid contribution 1.122 1.074 -0.563 1.652 sum 3.613 -9.595 -8.969 13.622 Atomic orbital electron populations 1.70039 1.05248 1.25576 1.53676 1.25057 0.95238 0.98367 1.00835 0.86407 0.78964 0.83517 0.78099 1.21131 1.21606 1.20864 1.19114 0.92655 0.85014 1.41611 0.91923 1.44091 1.37932 1.01526 1.48219 1.20910 0.89595 0.96126 0.88108 1.22987 0.98794 0.89525 0.98020 1.62146 1.36579 1.05712 1.20948 1.22239 0.96544 0.95524 0.92130 1.23229 1.00556 0.97229 0.95613 1.23040 0.99447 0.98709 0.95886 1.22850 1.00075 0.97651 0.97536 1.22857 1.01277 0.96289 0.96750 1.22609 0.90609 0.99146 0.96236 1.20986 0.97763 0.86536 0.92605 0.93601 0.95643 0.90134 0.95003 0.92561 0.91544 0.91344 0.89254 0.90270 0.91431 0.90622 0.91922 0.92030 0.90323 0.95311 0.92295 0.92824 0.95811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 11.38 55.49 0.63 -26.09 16 2 C 0.00 0.11 4.89 -17.43 -0.09 0.03 16 3 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -7.16 9.60 -15.06 -0.14 -7.31 16 8 H 0.06 1.73 7.89 -52.48 -0.41 1.32 16 9 N -0.59 -15.49 3.02 -171.73 -0.52 -16.01 16 10 C 0.18 4.43 5.43 -3.36 -0.02 4.42 16 11 C 0.04 0.72 4.52 -3.46 -0.02 0.70 16 12 N -0.53 -9.73 4.83 -234.02 -1.13 -10.86 16 13 C 0.06 0.94 5.25 -3.82 -0.02 0.92 16 14 C -0.15 -1.97 2.94 -89.80 -0.26 -2.24 16 15 C -0.13 -1.74 6.11 -25.82 -0.16 -1.90 16 16 C -0.14 -1.59 8.09 -25.83 -0.21 -1.80 16 17 C -0.13 -1.47 7.64 -25.92 -0.20 -1.67 16 18 C 0.04 0.81 5.20 -3.70 -0.02 0.79 16 19 C 0.15 3.27 6.69 -3.61 -0.02 3.24 16 20 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 21 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 2.19 6.32 -51.93 -0.33 1.86 16 23 H 0.03 0.65 5.94 -51.93 -0.31 0.34 16 24 H 0.06 1.04 8.11 -51.93 -0.42 0.61 16 25 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 26 H 0.07 0.96 7.83 -51.93 -0.41 0.55 16 27 H 0.09 1.36 6.30 -51.93 -0.33 1.03 16 28 H 0.08 1.00 7.89 -51.93 -0.41 0.59 16 29 H 0.07 0.98 7.27 -51.93 -0.38 0.60 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.03 0.55 6.54 -51.93 -0.34 0.21 16 35 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 36 H 0.05 1.14 7.95 -51.93 -0.41 0.73 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 281.80 15.07 4.25 4.25 Total: -1.00 -29.59 281.80 -9.21 -38.80 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -6.25 Total: -2.22 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.16 Total: -4.83 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -1.02 Total: -52.96 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.59 -9.21 -38.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083838974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.751 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds