Wall clock time and date at job start Mon Mar 30 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.52994 * 109.47296 * 314.30614 * 13 12 11 15 15 C 1.53008 * 109.47255 * 180.02562 * 14 13 12 16 16 C 1.52997 * 117.49845 * 243.74561 * 15 14 13 17 17 C 1.53000 * 117.49944 * 175.08471 * 15 14 13 18 18 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 19 19 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 20 20 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 22 22 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 23 23 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 24 24 H 1.08993 * 109.45072 * 173.95996 * 11 10 9 25 25 H 1.09004 * 109.47199 * 74.30771 * 13 12 11 26 26 H 1.09004 * 109.47300 * 194.30103 * 13 12 11 27 27 H 1.09005 * 109.47105 * 299.99648 * 14 13 12 28 28 H 1.08995 * 109.47522 * 59.99754 * 14 13 12 29 29 H 1.09003 * 115.54794 * 29.41122 * 15 14 13 30 30 H 1.09006 * 117.49676 * 359.97438 * 16 15 14 31 31 H 1.08996 * 117.50062 * 145.02262 * 16 15 14 32 32 H 1.09002 * 117.49974 * 214.98160 * 17 15 14 33 33 H 1.09004 * 117.49928 * 359.97438 * 17 15 14 34 34 H 1.09001 * 109.49186 * 303.14219 * 18 12 11 35 35 H 1.08999 * 109.49207 * 183.06673 * 18 12 11 36 36 H 1.09004 * 109.62440 * 350.90141 * 19 9 7 37 37 H 1.09004 * 109.62726 * 111.47314 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.3545 -5.5365 -3.8062 15 6 -0.2808 -6.6094 -4.8946 16 6 -0.1045 -6.1388 -6.3397 17 6 -1.4507 -6.7013 -5.8763 18 6 2.0102 -4.6146 -1.0325 19 6 1.8303 -3.6617 0.1539 20 1 -0.4851 0.8399 0.0004 21 1 -0.6867 -2.6167 -0.7035 22 1 0.0888 -1.3354 -1.6717 23 1 1.2942 -3.0054 -3.0036 24 1 -0.4375 -3.4181 -3.0103 25 1 1.7652 -5.5694 -3.4236 26 1 0.8161 -6.6739 -2.4001 27 1 -1.2807 -5.6534 -3.2434 28 1 -0.3315 -4.5490 -4.2669 29 1 0.2077 -7.5399 -4.6051 30 1 -0.0414 -5.0648 -6.5151 31 1 0.4995 -6.7599 -7.0011 32 1 -1.7317 -7.6922 -6.2331 33 1 -2.2730 -5.9977 -5.7466 34 1 2.8259 -4.2606 -1.6630 35 1 2.2420 -5.6141 -0.6644 36 1 2.7815 -3.5379 0.6717 37 1 1.0868 -4.0673 0.8400 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083926689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:37 Heat of formation + Delta-G solvation = 51.186157 kcal Electronic energy + Delta-G solvation = -15764.886970 eV Core-core repulsion = 13350.567502 eV Total energy + Delta-G solvation = -2414.319468 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.51740 -37.20223 -34.46778 -31.70390 -29.87780 -29.52005 -26.18950 -23.52950 -22.61146 -22.44970 -21.50137 -20.12040 -19.00223 -16.72842 -15.70428 -15.34040 -14.61986 -14.52770 -13.89810 -13.80627 -13.51024 -13.37448 -12.92350 -12.43643 -11.70797 -11.62594 -11.58476 -11.25234 -11.02725 -10.89595 -10.68742 -10.50441 -10.27090 -10.19110 -9.97307 -9.83955 -9.66550 -9.48607 -8.46941 -7.71489 -6.62684 -5.74639 -3.15510 3.39665 3.46551 3.48133 3.74716 4.36178 4.53115 4.79431 4.88032 4.90632 5.26998 5.41788 5.48893 5.50503 5.55314 5.60776 5.77389 5.87229 5.94964 6.02013 6.03756 6.05472 6.22194 6.26121 6.31979 6.39272 6.44513 6.60600 6.75744 6.98402 7.30786 7.68679 7.71683 7.77307 7.87511 8.47171 9.24936 9.88614 10.47585 11.34074 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.041956 B = 0.005973 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.198567 B = 4686.505059 C = 5017.016475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.178 3.822 11 C 0.029 3.971 12 N -0.534 5.534 13 C 0.059 3.941 14 C -0.093 4.093 15 C -0.147 4.147 16 C -0.184 4.184 17 C -0.182 4.182 18 C 0.045 3.955 19 C 0.148 3.852 20 H 0.253 0.747 21 H 0.026 0.974 22 H 0.087 0.913 23 H 0.022 0.978 24 H 0.066 0.934 25 H 0.025 0.975 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.026 0.974 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.232 -11.553 -9.076 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.100 4.100 12 N -0.259 5.259 13 C -0.069 4.069 14 C -0.130 4.130 15 C -0.166 4.166 16 C -0.221 4.221 17 C -0.219 4.219 18 C -0.085 4.085 19 C 0.022 3.978 20 H 0.063 0.937 21 H 0.044 0.956 22 H 0.105 0.895 23 H 0.041 0.959 24 H 0.084 0.916 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.702 -11.511 -8.723 14.460 hybrid contribution 1.089 1.011 -0.632 1.614 sum 0.386 -10.500 -9.355 14.068 Atomic orbital electron populations 1.70034 1.05203 1.25399 1.54223 1.25010 0.95290 0.98311 1.01145 0.86278 0.79157 0.83832 0.77550 1.21562 1.21754 1.20430 1.19228 0.92698 0.84939 1.41196 0.91645 1.44152 1.34469 1.01174 1.52145 1.20971 0.88911 0.96655 0.88309 1.23081 0.98769 0.89445 0.98678 1.62038 1.34551 1.06038 1.23302 1.22073 0.96373 0.96259 0.92240 1.21352 0.99340 0.97278 0.95064 1.22322 1.02561 1.00831 0.90905 1.23045 1.00097 1.01363 0.97577 1.22957 0.92223 1.02334 1.04425 1.22601 0.89708 0.99252 0.96898 1.20978 0.97700 0.86524 0.92632 0.93660 0.95598 0.89461 0.95925 0.91591 0.95700 0.91523 0.90737 0.91266 0.88029 0.88833 0.89199 0.89121 0.88781 0.95555 0.92162 0.92687 0.95691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 11.16 55.49 0.62 -26.08 16 2 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 16 3 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -7.08 9.63 -15.06 -0.15 -7.22 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -15.59 3.03 -171.74 -0.52 -16.11 16 10 C 0.18 4.42 5.45 -3.36 -0.02 4.40 16 11 C 0.03 0.59 5.06 -3.46 -0.02 0.58 16 12 N -0.53 -9.95 4.78 -234.03 -1.12 -11.07 16 13 C 0.06 0.88 5.23 -3.83 -0.02 0.86 16 14 C -0.09 -1.24 4.75 -26.73 -0.13 -1.36 16 15 C -0.15 -1.64 5.73 -90.62 -0.52 -2.16 16 16 C -0.18 -1.89 10.18 -26.69 -0.27 -2.17 16 17 C -0.18 -1.81 10.25 -26.69 -0.27 -2.09 16 18 C 0.04 0.85 5.58 -3.70 -0.02 0.83 16 19 C 0.15 3.28 6.69 -3.61 -0.02 3.25 16 20 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 21 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.09 2.39 6.11 -51.93 -0.32 2.07 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 1.21 5.73 -51.93 -0.30 0.91 16 25 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.98 5.91 -51.93 -0.31 0.67 16 29 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 30 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.05 1.16 7.95 -51.93 -0.41 0.75 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 290.83 15.07 4.38 4.38 Total: -1.00 -29.78 290.83 -9.55 -39.33 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.37 Total: -2.27 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.52 Total: -5.14 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -1.02 Total: -53.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.78 -9.55 -39.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083926689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.520 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds