Wall clock time and date at job start Mon Mar 30 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.52994 * 109.47296 * 314.30614 * 13 12 11 15 15 C 1.53008 * 109.47255 * 180.02562 * 14 13 12 16 16 C 1.52997 * 117.49845 * 243.74561 * 15 14 13 17 17 C 1.53000 * 117.49944 * 175.08471 * 15 14 13 18 18 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 19 19 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 20 20 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 22 22 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 23 23 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 24 24 H 1.08993 * 109.45072 * 173.95996 * 11 10 9 25 25 H 1.09004 * 109.47199 * 74.30771 * 13 12 11 26 26 H 1.09004 * 109.47300 * 194.30103 * 13 12 11 27 27 H 1.09005 * 109.47105 * 299.99648 * 14 13 12 28 28 H 1.08995 * 109.47522 * 59.99754 * 14 13 12 29 29 H 1.09003 * 115.54794 * 29.41122 * 15 14 13 30 30 H 1.09006 * 117.49676 * 359.97438 * 16 15 14 31 31 H 1.08996 * 117.50062 * 145.02262 * 16 15 14 32 32 H 1.09002 * 117.49974 * 214.98160 * 17 15 14 33 33 H 1.09004 * 117.49928 * 359.97438 * 17 15 14 34 34 H 1.09001 * 109.49186 * 303.14219 * 18 12 11 35 35 H 1.08999 * 109.49207 * 183.06673 * 18 12 11 36 36 H 1.09004 * 109.62440 * 350.90141 * 19 9 7 37 37 H 1.09004 * 109.62726 * 111.47314 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.3545 -5.5365 -3.8062 15 6 -0.2808 -6.6094 -4.8946 16 6 -0.1045 -6.1388 -6.3397 17 6 -1.4507 -6.7013 -5.8763 18 6 2.0102 -4.6146 -1.0325 19 6 1.8303 -3.6617 0.1539 20 1 -0.4851 0.8399 0.0004 21 1 -0.6867 -2.6167 -0.7035 22 1 0.0888 -1.3354 -1.6717 23 1 1.2942 -3.0054 -3.0036 24 1 -0.4375 -3.4181 -3.0103 25 1 1.7652 -5.5694 -3.4236 26 1 0.8161 -6.6739 -2.4001 27 1 -1.2807 -5.6534 -3.2434 28 1 -0.3315 -4.5490 -4.2669 29 1 0.2077 -7.5399 -4.6051 30 1 -0.0414 -5.0648 -6.5151 31 1 0.4995 -6.7599 -7.0011 32 1 -1.7317 -7.6922 -6.2331 33 1 -2.2730 -5.9977 -5.7466 34 1 2.8259 -4.2606 -1.6630 35 1 2.2420 -5.6141 -0.6644 36 1 2.7815 -3.5379 0.6717 37 1 1.0868 -4.0673 0.8400 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083926689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:36 Heat of formation + Delta-G solvation = 33.139360 kcal Electronic energy + Delta-G solvation = -15765.669538 eV Core-core repulsion = 13350.567502 eV Total energy + Delta-G solvation = -2415.102036 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95087 -38.31362 -36.21168 -33.54786 -31.66293 -31.00041 -27.95803 -25.27873 -24.32747 -23.25744 -22.85754 -21.18790 -20.73599 -18.71744 -17.07248 -16.60675 -16.32733 -15.95482 -15.36638 -15.27109 -15.15940 -15.06122 -14.51304 -14.01624 -13.28461 -13.03202 -12.88500 -12.64600 -12.55849 -12.35519 -12.20361 -12.09627 -12.00631 -11.85625 -11.48409 -11.44192 -10.98424 -10.73499 -10.59484 -9.23618 -8.69545 -7.88579 -5.33586 1.45905 1.46994 1.56794 2.49963 2.90924 3.03813 3.26459 3.67533 3.77839 4.03599 4.07242 4.24603 4.29748 4.35411 4.42655 4.53411 4.60857 4.65624 4.71626 4.75465 4.81352 4.90031 4.99058 5.06849 5.12961 5.18017 5.23172 5.29420 5.35684 5.43813 5.59888 5.66341 6.20185 6.30754 6.36671 7.11870 7.82568 8.37378 9.18333 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.041956 B = 0.005973 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.198567 B = 4686.505059 C = 5017.016475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.615 5.615 10 C 0.184 3.816 11 C 0.048 3.952 12 N -0.545 5.545 13 C 0.062 3.938 14 C -0.088 4.088 15 C -0.155 4.155 16 C -0.185 4.185 17 C -0.177 4.177 18 C 0.055 3.945 19 C 0.143 3.857 20 H 0.251 0.749 21 H -0.002 1.002 22 H 0.056 0.944 23 H 0.014 0.986 24 H 0.085 0.915 25 H 0.028 0.972 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.021 0.979 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 -12.972 -10.088 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.340 5.340 10 C 0.058 3.942 11 C -0.081 4.081 12 N -0.270 5.270 13 C -0.065 4.065 14 C -0.125 4.125 15 C -0.173 4.173 16 C -0.222 4.222 17 C -0.214 4.214 18 C -0.074 4.074 19 C 0.017 3.983 20 H 0.060 0.940 21 H 0.016 0.984 22 H 0.074 0.926 23 H 0.032 0.968 24 H 0.103 0.897 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.040 0.960 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 0.170 -12.966 -9.741 16.218 hybrid contribution 0.803 1.393 -0.282 1.632 sum 0.973 -11.573 -10.023 15.341 Atomic orbital electron populations 1.70194 1.06718 1.25918 1.55442 1.25805 0.96077 1.01533 1.01215 0.85219 0.78212 0.79412 0.77415 1.21251 1.21973 1.19187 1.19574 0.93042 0.86136 1.40898 0.91447 1.44444 1.34551 1.02149 1.52818 1.20740 0.87828 0.96413 0.89190 1.22739 0.99342 0.89429 0.96597 1.61995 1.34624 1.05663 1.24743 1.22146 0.97163 0.95575 0.91593 1.21254 0.98312 0.97610 0.95341 1.22257 1.03963 1.00558 0.90546 1.23110 1.00640 1.01285 0.97156 1.23039 0.91848 1.03122 1.03355 1.22461 0.89579 0.99944 0.95444 1.21143 0.97467 0.85563 0.94109 0.94008 0.98382 0.92558 0.96777 0.89688 0.95346 0.89615 0.91436 0.92462 0.86853 0.89586 0.87782 0.87463 0.89112 0.96039 0.88728 0.92057 0.96591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.86 11.16 21.65 0.24 -56.62 16 2 C -0.05 -2.93 4.93 84.86 0.42 -2.51 16 3 Si 0.97 45.67 29.59 68.60 2.03 47.70 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.27 -15.20 9.63 84.03 0.81 -14.39 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 9 N -0.62 -32.67 3.03 -697.26 -2.11 -34.78 16 10 C 0.18 9.45 5.45 86.50 0.47 9.92 16 11 C 0.05 1.94 5.06 86.54 0.44 2.38 16 12 N -0.55 -19.47 4.78 -894.33 -4.27 -23.75 16 13 C 0.06 1.71 5.23 86.30 0.45 2.16 16 14 C -0.09 -2.17 4.75 30.59 0.15 -2.02 16 15 C -0.15 -3.04 5.73 -10.79 -0.06 -3.10 16 16 C -0.18 -3.38 10.18 30.62 0.31 -3.06 16 17 C -0.18 -3.07 10.25 30.62 0.31 -2.76 16 18 C 0.05 1.97 5.58 86.38 0.48 2.45 16 19 C 0.14 6.26 6.69 86.35 0.58 6.84 16 20 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 21 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 22 H 0.06 3.20 6.11 -2.39 -0.01 3.19 16 23 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 24 H 0.09 3.08 5.73 -2.39 -0.01 3.07 16 25 H 0.03 0.78 8.08 -2.39 -0.02 0.76 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.06 1.54 5.91 -2.39 -0.01 1.53 16 29 H 0.11 1.99 8.08 -2.39 -0.02 1.97 16 30 H 0.09 1.70 8.03 -2.38 -0.02 1.68 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 2.76 8.11 -2.39 -0.02 2.74 16 36 H 0.06 2.55 7.95 -2.38 -0.02 2.53 16 37 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -64.24 290.83 1.26 -62.98 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.01 Total: 8.57 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 4.36 Total: -4.10 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -6.14 Total: -115.15 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -64.24 1.26 -62.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083926689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.123 kcal (2) G-P(sol) polarization free energy of solvation -64.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds