Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.20759 * 119.99985 * 270.00194 * 12 2 1 14 14 C 1.50700 * 119.99999 * 90.00141 * 12 2 1 15 15 C 1.54248 * 108.89337 * 276.39244 * 14 12 2 16 16 C 1.50553 * 108.48056 * 159.17907 * 15 14 12 17 17 C 1.54069 * 112.41600 * 94.27127 * 16 15 14 18 18 C 1.54072 * 112.81342 * 318.27677 * 17 16 15 19 19 C 1.50473 * 112.49497 * 318.28762 * 18 17 16 20 20 C 1.45545 * 108.89463 * 153.60876 * 14 12 2 21 21 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 25 25 H 1.08993 * 108.87576 * 34.99640 * 14 12 2 26 26 H 1.08998 * 109.62879 * 278.97735 * 15 14 12 27 27 H 1.09000 * 109.62754 * 39.55817 * 15 14 12 28 28 H 1.08996 * 108.92779 * 333.51339 * 16 15 14 29 29 H 1.09005 * 108.91835 * 215.01972 * 16 15 14 30 30 H 1.09000 * 108.81516 * 197.42028 * 17 16 15 31 31 H 1.08995 * 108.72663 * 79.07256 * 17 16 15 32 32 H 1.08994 * 108.87810 * 197.50547 * 18 17 16 33 33 H 1.09005 * 108.87443 * 79.06103 * 18 17 16 34 34 H 1.09000 * 109.62804 * 334.44027 * 19 18 17 35 35 H 1.09002 * 109.62699 * 213.86139 * 19 18 17 36 36 H 1.09005 * 108.89106 * 303.43732 * 20 14 12 37 37 H 1.08992 * 108.89670 * 62.02723 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 8 2.2335 -1.9006 -1.2008 14 6 2.2835 0.0649 -2.4983 15 6 0.9525 0.2168 -3.2628 16 6 1.0777 1.3782 -4.2127 17 6 1.5066 0.9380 -5.6255 18 6 2.6068 -0.1404 -5.6070 19 6 3.6638 0.1332 -4.5716 20 6 3.2952 -0.6284 -3.2820 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8912 -0.5369 4.4374 25 1 2.6561 1.0555 -2.2379 26 1 0.7455 -0.6954 -3.8224 27 1 0.1444 0.4080 -2.5567 28 1 1.8170 2.0769 -3.8214 29 1 0.1155 1.8862 -4.2785 30 1 1.8765 1.8082 -6.1677 31 1 0.6357 0.5427 -6.1483 32 1 3.0774 -0.1810 -6.5893 33 1 2.1493 -1.1073 -5.3970 34 1 3.7065 1.2027 -4.3657 35 1 4.6315 -0.2113 -4.9363 36 1 4.1921 -0.7478 -2.6740 37 1 2.9181 -1.6148 -3.5517 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = -62.447696 kcal Electronic energy + Delta-G solvation = -16186.855637 eV Core-core repulsion = 13735.315885 eV Total energy + Delta-G solvation = -2451.539753 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82907 -37.42186 -33.86682 -32.38365 -32.07813 -31.03612 -25.66489 -25.19109 -24.55354 -22.88434 -20.26025 -19.24074 -18.45257 -16.73657 -15.83241 -15.34281 -14.93793 -14.65969 -14.19821 -13.61070 -13.28172 -13.12465 -13.01805 -12.58281 -12.16364 -12.10534 -11.97531 -11.67929 -11.13464 -10.93822 -10.66382 -10.58558 -10.52409 -10.36468 -10.29569 -10.22562 -10.02896 -9.61677 -9.10887 -8.60408 -8.24380 -6.07515 -4.07879 2.95607 3.24223 3.32308 3.36622 4.37602 4.56855 4.74023 4.86710 5.04075 5.18509 5.24894 5.27675 5.34809 5.43506 5.53212 5.70252 5.78853 5.90685 6.02335 6.09806 6.12961 6.17523 6.19011 6.23797 6.28757 6.36651 6.43549 6.47503 6.58967 6.61032 6.63102 6.91033 7.18571 7.62276 8.44391 8.61208 9.02897 9.51766 11.05625 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.042973 B = 0.007614 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.413527 B = 3676.474206 C = 4031.169009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.035 4.035 3 H 0.048 0.952 4 C -0.509 4.509 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.897 5.897 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.265 1.265 12 C 0.374 3.626 13 O -0.455 6.455 14 C -0.136 4.136 15 C -0.108 4.108 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.110 4.110 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.037 0.963 24 H 0.264 0.736 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 6.131 -16.685 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.054 4.054 3 H 0.065 0.935 4 C -0.547 4.547 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.535 5.535 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.190 1.190 12 C 0.248 3.752 13 O -0.327 6.327 14 C -0.155 4.155 15 C -0.145 4.145 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.152 4.152 20 C -0.147 4.147 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.584 5.476 -16.468 17.427 hybrid contribution -0.607 0.916 0.340 1.150 sum -2.191 6.392 -16.128 17.486 Atomic orbital electron populations 1.22109 0.97049 1.01450 0.99275 1.19685 0.93501 0.97894 0.94339 0.93457 1.20906 1.32296 1.13708 0.87792 0.89881 1.24995 0.95747 0.96666 0.95737 1.69893 1.45527 1.40154 0.97906 0.86864 0.80665 0.83738 0.77067 1.20535 1.22333 1.19028 1.24791 0.71946 0.89003 0.89434 1.90256 1.39355 1.17944 1.85145 1.20776 0.97018 1.01579 0.96162 1.21342 0.96257 0.99157 0.97775 1.21355 1.01221 0.98055 0.94831 1.21911 0.98124 0.98439 0.96817 1.21359 0.96320 0.99320 0.98688 1.21314 0.97965 1.00716 0.95237 1.20387 0.98646 0.99597 0.96103 0.92454 0.93398 0.94386 0.92558 0.89374 0.91354 0.90768 0.91803 0.92267 0.92579 0.92577 0.92754 0.91983 0.91679 0.92117 0.92056 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.16 0.32 -2.70 16 2 C -0.03 -0.82 2.17 -92.92 -0.20 -1.02 16 3 H 0.05 1.07 7.13 -51.93 -0.37 0.70 16 4 C -0.51 -14.76 8.91 -34.44 -0.31 -15.06 16 5 H 0.08 2.71 7.38 -52.49 -0.39 2.32 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 8 Si 0.89 21.62 24.37 -169.99 -4.14 17.48 16 9 H -0.28 -6.61 6.86 56.52 0.39 -6.22 16 10 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 12 C 0.37 7.96 5.18 -29.03 -0.15 7.81 16 13 O -0.45 -11.16 15.62 6.00 0.09 -11.07 16 14 C -0.14 -2.17 1.96 -94.63 -0.19 -2.36 16 15 C -0.11 -1.47 4.97 -27.30 -0.14 -1.61 16 16 C -0.12 -1.30 5.32 -27.40 -0.15 -1.44 16 17 C -0.12 -1.14 5.85 -25.61 -0.15 -1.29 16 18 C -0.12 -1.25 5.31 -27.43 -0.15 -1.40 16 19 C -0.11 -1.33 5.61 -27.35 -0.15 -1.48 16 20 C -0.11 -1.63 4.01 -29.60 -0.12 -1.75 16 21 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 22 H 0.05 1.06 3.25 -51.93 -0.17 0.89 16 23 H 0.04 0.65 5.81 -51.93 -0.30 0.35 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.09 1.33 7.39 -51.93 -0.38 0.94 16 26 H 0.07 0.93 6.97 -51.93 -0.36 0.57 16 27 H 0.07 1.04 5.45 -51.93 -0.28 0.76 16 28 H 0.06 0.70 6.63 -51.93 -0.34 0.36 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.70 6.62 -51.93 -0.34 0.36 16 34 H 0.06 0.72 6.98 -51.93 -0.36 0.36 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.07 1.08 7.11 -51.93 -0.37 0.71 16 LS Contribution 273.70 15.07 4.12 4.12 Total: -1.00 -31.49 273.70 -6.44 -37.93 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.82 Total: -1.04 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -1.47 Total: -20.35 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.77 Total: -27.08 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.48 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.49 -6.44 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.514 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds