Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.20759 * 119.99985 * 270.00194 * 12 2 1 14 14 C 1.50700 * 119.99999 * 90.00141 * 12 2 1 15 15 C 1.54248 * 108.89337 * 276.39244 * 14 12 2 16 16 C 1.50553 * 108.48056 * 159.17907 * 15 14 12 17 17 C 1.54069 * 112.41600 * 94.27127 * 16 15 14 18 18 C 1.54072 * 112.81342 * 318.27677 * 17 16 15 19 19 C 1.50473 * 112.49497 * 318.28762 * 18 17 16 20 20 C 1.45545 * 108.89463 * 153.60876 * 14 12 2 21 21 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 25 25 H 1.08993 * 108.87576 * 34.99640 * 14 12 2 26 26 H 1.08998 * 109.62879 * 278.97735 * 15 14 12 27 27 H 1.09000 * 109.62754 * 39.55817 * 15 14 12 28 28 H 1.08996 * 108.92779 * 333.51339 * 16 15 14 29 29 H 1.09005 * 108.91835 * 215.01972 * 16 15 14 30 30 H 1.09000 * 108.81516 * 197.42028 * 17 16 15 31 31 H 1.08995 * 108.72663 * 79.07256 * 17 16 15 32 32 H 1.08994 * 108.87810 * 197.50547 * 18 17 16 33 33 H 1.09005 * 108.87443 * 79.06103 * 18 17 16 34 34 H 1.09000 * 109.62804 * 334.44027 * 19 18 17 35 35 H 1.09002 * 109.62699 * 213.86139 * 19 18 17 36 36 H 1.09005 * 108.89106 * 303.43732 * 20 14 12 37 37 H 1.08992 * 108.89670 * 62.02723 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 8 2.2335 -1.9006 -1.2008 14 6 2.2835 0.0649 -2.4983 15 6 0.9525 0.2168 -3.2628 16 6 1.0777 1.3782 -4.2127 17 6 1.5066 0.9380 -5.6255 18 6 2.6068 -0.1404 -5.6070 19 6 3.6638 0.1332 -4.5716 20 6 3.2952 -0.6284 -3.2820 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8912 -0.5369 4.4374 25 1 2.6561 1.0555 -2.2379 26 1 0.7455 -0.6954 -3.8224 27 1 0.1444 0.4080 -2.5567 28 1 1.8170 2.0769 -3.8214 29 1 0.1155 1.8862 -4.2785 30 1 1.8765 1.8082 -6.1677 31 1 0.6357 0.5427 -6.1483 32 1 3.0774 -0.1810 -6.5893 33 1 2.1493 -1.1073 -5.3970 34 1 3.7065 1.2027 -4.3657 35 1 4.6315 -0.2113 -4.9363 36 1 4.1921 -0.7478 -2.6740 37 1 2.9181 -1.6148 -3.5517 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = -82.302255 kcal Electronic energy + Delta-G solvation = -16187.716596 eV Core-core repulsion = 13735.315885 eV Total energy + Delta-G solvation = -2452.400711 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.28135 -38.74372 -35.86288 -33.76121 -33.21910 -32.70807 -27.26223 -26.86359 -25.58369 -24.38055 -21.60685 -20.10807 -20.06991 -18.81696 -17.19651 -17.13404 -16.43487 -15.76481 -15.52704 -15.17137 -14.72700 -14.53096 -14.37389 -14.16150 -13.67540 -13.55235 -13.05001 -12.96641 -12.82354 -12.59128 -12.26594 -12.02270 -11.67312 -11.57417 -11.44376 -11.35993 -11.24679 -11.11514 -10.99951 -10.80402 -9.92899 -8.32307 -6.40220 1.25906 1.32138 1.37322 1.49272 2.31441 3.01543 3.19654 3.70336 3.89661 4.04951 4.24671 4.26792 4.36609 4.43089 4.43417 4.48865 4.53058 4.59631 4.69031 4.93973 4.97697 4.98678 5.07735 5.10355 5.17687 5.27341 5.35959 5.39188 5.41995 5.42869 5.44217 5.54836 5.57552 5.65073 6.21822 6.67748 6.88883 7.24657 8.85510 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.042973 B = 0.007614 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.413527 B = 3676.474206 C = 4031.169009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 H 0.069 0.931 4 C -0.525 4.525 5 H 0.020 0.980 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.959 3.041 9 H -0.264 1.264 10 H -0.297 1.297 11 H -0.227 1.227 12 C 0.371 3.629 13 O -0.502 6.502 14 C -0.124 4.124 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.105 4.105 20 C -0.110 4.110 21 H 0.040 0.960 22 H 0.045 0.955 23 H 0.086 0.914 24 H 0.268 0.732 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 9.465 -19.210 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.063 4.063 3 H 0.086 0.914 4 C -0.563 4.563 5 H 0.039 0.961 6 C -0.191 4.191 7 N -0.592 5.592 8 Si 0.784 3.216 9 H -0.190 1.190 10 H -0.225 1.225 11 H -0.150 1.150 12 C 0.249 3.751 13 O -0.377 6.377 14 C -0.143 4.143 15 C -0.141 4.141 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.143 4.143 20 C -0.148 4.148 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.105 0.895 24 H 0.077 0.923 25 H 0.125 0.875 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.113 8.819 -19.031 21.205 hybrid contribution -0.036 -0.263 1.155 1.185 sum -3.149 8.556 -17.876 20.067 Atomic orbital electron populations 1.22036 0.94789 1.01243 1.01492 1.19773 0.95415 0.98193 0.92923 0.91353 1.21120 1.31851 1.12424 0.90921 0.96140 1.26070 0.97348 1.00812 0.94827 1.70083 1.47637 1.42749 0.98773 0.85694 0.78586 0.79092 0.78234 1.19003 1.22460 1.14981 1.25326 0.70302 0.88569 0.90952 1.90247 1.41397 1.20070 1.86008 1.20771 0.98943 1.01117 0.93431 1.21364 0.94196 1.00525 0.98029 1.21348 1.02524 0.96768 0.94649 1.21911 0.98089 0.98750 0.96345 1.21363 0.96336 0.99066 0.99049 1.21267 0.98842 1.00788 0.93377 1.20394 0.97352 0.99437 0.97567 0.94092 0.93654 0.89507 0.92346 0.87546 0.91707 0.90843 0.91217 0.90501 0.90862 0.91858 0.91065 0.93357 0.90381 0.91236 0.94248 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.56 8.52 71.98 0.61 -4.95 16 2 C -0.04 -2.02 2.17 -12.29 -0.03 -2.05 16 3 H 0.07 2.89 7.13 -2.38 -0.02 2.87 16 4 C -0.53 -31.69 8.91 25.60 0.23 -31.46 16 5 H 0.02 1.44 7.38 -2.91 -0.02 1.42 16 6 C 0.01 0.36 5.45 84.65 0.46 0.82 16 7 N -0.95 -61.68 13.96 21.45 0.30 -61.38 16 8 Si 0.96 43.70 24.37 68.60 1.67 45.37 16 9 H -0.26 -11.40 6.86 99.48 0.68 -10.71 16 10 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16 12 C 0.37 15.91 5.18 29.10 0.15 16.06 16 13 O -0.50 -25.96 15.62 -1.45 -0.02 -25.98 16 14 C -0.12 -3.74 1.96 -13.39 -0.03 -3.77 16 15 C -0.10 -2.50 4.97 30.22 0.15 -2.35 16 16 C -0.12 -2.02 5.32 30.16 0.16 -1.86 16 17 C -0.11 -1.74 5.85 31.32 0.18 -1.56 16 18 C -0.12 -2.16 5.31 30.14 0.16 -2.00 16 19 C -0.11 -2.16 5.61 30.20 0.17 -1.99 16 20 C -0.11 -3.21 4.01 28.74 0.12 -3.09 16 21 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.04 1.84 3.25 -2.38 -0.01 1.83 16 23 H 0.09 2.62 5.81 -2.38 -0.01 2.61 16 24 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 25 H 0.11 2.85 7.39 -2.39 -0.02 2.84 16 26 H 0.06 1.62 6.97 -2.39 -0.02 1.60 16 27 H 0.07 1.77 5.45 -2.39 -0.01 1.76 16 28 H 0.07 1.17 6.63 -2.39 -0.02 1.15 16 29 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.00 6.62 -2.38 -0.02 0.99 16 34 H 0.08 1.42 6.98 -2.39 -0.02 1.41 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.29 8.10 -2.38 -0.02 1.27 16 37 H 0.05 1.64 7.11 -2.39 -0.02 1.63 16 Total: -1.00 -73.61 273.70 5.25 -68.36 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.96 Total: 11.80 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 2.34 Total: -38.18 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.30 Total: -61.38 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.02 Total: -25.98 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.67 Total: 45.37 kcal Total: -73.61 5.25 -68.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.939 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds