Wall clock time and date at job start Mon Mar 30 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47318 * 2 1 4 4 C 1.50702 * 109.47495 * 120.00519 * 2 1 3 5 5 H 1.07997 * 120.00161 * 119.99786 * 4 2 1 6 6 C 1.37874 * 119.99565 * 300.00231 * 4 2 1 7 7 N 1.31516 * 120.00562 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99814 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46903 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47095 * 120.00080 * 8 6 4 11 11 H 1.48506 * 109.46887 * 240.00006 * 8 6 4 12 12 C 1.50706 * 109.47186 * 240.00754 * 2 1 3 13 13 O 1.20758 * 119.99420 * 269.99833 * 12 2 1 14 14 C 1.50693 * 120.00436 * 89.72023 * 12 2 1 15 15 H 1.09008 * 109.47122 * 330.00508 * 14 12 2 16 16 C 1.53008 * 109.47010 * 89.99846 * 14 12 2 17 17 C 1.53003 * 109.47175 * 180.02562 * 16 14 12 18 18 C 1.53000 * 109.46845 * 300.00428 * 17 16 14 19 19 C 1.52999 * 109.47523 * 59.99709 * 18 17 16 20 20 H 1.09001 * 109.46864 * 59.99772 * 19 18 17 21 21 C 1.52995 * 109.47110 * 179.97438 * 19 18 17 22 22 C 1.52994 * 109.47299 * 300.00208 * 19 18 17 23 23 H 1.09002 * 109.47171 * 299.99397 * 1 2 3 24 24 H 1.09004 * 109.47223 * 59.99900 * 1 2 3 25 25 H 1.08997 * 109.46785 * 179.97438 * 1 2 3 26 26 H 0.96994 * 120.00630 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47317 * 300.00171 * 16 14 12 28 28 H 1.08996 * 109.46940 * 60.00160 * 16 14 12 29 29 H 1.09006 * 109.46875 * 59.99821 * 17 16 14 30 30 H 1.09000 * 109.47130 * 180.02562 * 17 16 14 31 31 H 1.08994 * 109.47052 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.47237 * 299.99709 * 18 17 16 33 33 H 1.09001 * 109.47225 * 60.00260 * 21 19 18 34 34 H 1.09001 * 109.47457 * 179.97438 * 21 19 18 35 35 H 1.08994 * 109.47477 * 300.00369 * 21 19 18 36 36 H 1.08996 * 109.47181 * 299.99845 * 22 19 18 37 37 H 1.09000 * 109.47132 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9435 0.8300 2.6035 8 14 2.3215 -1.1206 4.0078 9 1 3.1456 -2.2879 3.6035 10 1 3.1466 -0.1877 4.8165 11 1 1.1661 -1.5871 4.8159 12 6 2.0324 -0.7103 -1.2306 13 8 2.2336 -1.9006 -1.2007 14 6 2.2775 0.0637 -2.5001 15 1 1.5933 0.9110 -2.5470 16 6 3.7206 0.5722 -2.5168 17 6 3.9694 1.3586 -3.8054 18 6 3.7356 0.4474 -5.0121 19 6 2.2927 -0.0610 -4.9954 20 1 1.6084 0.7862 -5.0418 21 6 2.0588 -0.9716 -6.2024 22 6 2.0439 -0.8473 -3.7068 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7095 1.1615 3.4844 27 1 3.8869 1.2217 -1.6573 28 1 4.4048 -0.2749 -2.4698 29 1 3.2850 2.2058 -3.8519 30 1 4.9975 1.7205 -3.8175 31 1 3.9133 1.0075 -5.9301 32 1 4.4199 -0.3998 -4.9656 33 1 2.7431 -1.8189 -6.1563 34 1 1.0310 -1.3343 -6.1903 35 1 2.2360 -0.4111 -7.1202 36 1 2.7281 -1.6945 -3.6602 37 1 1.0158 -1.2092 -3.6947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084341501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:53 Heat of formation + Delta-G solvation = -82.214594 kcal Electronic energy + Delta-G solvation = -15958.554316 eV Core-core repulsion = 13506.157406 eV Total energy + Delta-G solvation = -2452.396910 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.44665 -37.31475 -33.72721 -32.51488 -30.93403 -30.12855 -26.29385 -25.16431 -24.10781 -21.69690 -21.21929 -19.53252 -18.08073 -16.26512 -15.37248 -15.05120 -14.55199 -14.26939 -14.11893 -13.69661 -13.23356 -12.91586 -12.63269 -12.27618 -12.16123 -11.66651 -11.50458 -11.31183 -11.03251 -10.87272 -10.78358 -10.69736 -10.59581 -10.36535 -10.19741 -10.17874 -10.05022 -9.82372 -8.95375 -8.43327 -8.05747 -6.02241 -4.07423 3.11712 3.30923 3.38586 3.46107 4.42888 4.73745 4.82058 4.93418 5.23713 5.29648 5.31518 5.39418 5.57556 5.62818 5.72226 5.76182 5.82287 5.89891 5.94567 6.10099 6.12065 6.30828 6.34053 6.40135 6.43232 6.56056 6.64096 6.69393 6.79864 6.94280 7.05333 7.54448 7.78566 8.02224 8.28470 8.76837 8.97846 9.57374 11.04272 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.045532 B = 0.006555 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.809704 B = 4270.388826 C = 4358.577406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.001 4.001 3 H 0.048 0.952 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.369 3.631 13 O -0.469 6.469 14 C -0.140 4.140 15 H 0.088 0.912 16 C -0.104 4.104 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.092 4.092 20 H 0.068 0.932 21 C -0.146 4.146 22 C -0.100 4.100 23 H 0.093 0.907 24 H 0.012 0.988 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 1.872 -13.604 14.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.019 4.019 3 H 0.066 0.934 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.245 3.755 13 O -0.343 6.343 14 C -0.160 4.160 15 H 0.106 0.894 16 C -0.142 4.142 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.111 4.111 20 H 0.087 0.913 21 C -0.203 4.203 22 C -0.138 4.138 23 H 0.111 0.889 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.816 1.340 -13.451 13.807 hybrid contribution 0.206 -0.265 0.900 0.960 sum 3.022 1.075 -12.551 12.955 Atomic orbital electron populations 1.21642 0.96201 0.99777 1.00931 1.19223 0.94351 0.97241 0.91128 0.93377 1.21122 1.31160 1.12358 0.89555 0.91696 1.24945 0.95065 0.95009 0.99055 1.69877 1.36987 1.23010 1.23390 0.86464 0.78696 0.79778 0.82721 1.19656 1.20992 1.20958 1.25208 0.71261 0.88932 0.90142 1.90208 1.40164 1.18197 1.85716 1.21845 0.98609 0.99918 0.95597 0.89409 1.21372 0.94796 1.00086 0.97934 1.21529 1.01162 0.98183 0.94519 1.21598 0.96490 0.99267 0.97735 1.21143 0.96918 0.98203 0.94792 0.91332 1.21818 1.01552 0.99571 0.97380 1.21471 1.01813 0.98018 0.92487 0.88877 0.96865 0.95050 0.92992 0.90992 0.91858 0.91897 0.92056 0.92432 0.92104 0.92794 0.92791 0.93028 0.91321 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.95 37.16 0.33 -2.74 16 2 C 0.00 -0.01 2.56 -92.92 -0.24 -0.25 16 3 H 0.05 1.23 8.12 -51.93 -0.42 0.81 16 4 C -0.50 -14.31 8.32 -34.44 -0.29 -14.60 16 5 H 0.06 1.93 7.14 -52.49 -0.37 1.55 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.37 8.25 5.27 -29.04 -0.15 8.10 16 13 O -0.47 -11.78 15.77 6.00 0.09 -11.68 16 14 C -0.14 -2.42 2.45 -91.77 -0.22 -2.64 16 15 H 0.09 1.43 8.12 -51.92 -0.42 1.01 16 16 C -0.10 -1.62 5.19 -26.73 -0.14 -1.76 16 17 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 18 C -0.11 -1.30 5.20 -26.73 -0.14 -1.44 16 19 C -0.09 -1.12 2.72 -90.63 -0.25 -1.37 16 20 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.15 -1.55 9.19 37.15 0.34 -1.20 16 22 C -0.10 -1.54 4.08 -26.74 -0.11 -1.65 16 23 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 1.14 7.86 -51.93 -0.41 0.73 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 294.58 15.07 4.44 4.44 Total: -1.00 -29.59 294.58 -7.55 -37.13 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.57 Total: -2.40 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -1.11 Total: -19.55 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.63 Total: -24.71 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.59 -7.55 -37.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084341501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.080 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds