Wall clock time and date at job start Mon Mar 30 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47318 * 2 1 4 4 C 1.50702 * 109.47495 * 120.00519 * 2 1 3 5 5 H 1.07997 * 120.00161 * 119.99786 * 4 2 1 6 6 C 1.37874 * 119.99565 * 300.00231 * 4 2 1 7 7 N 1.31516 * 120.00562 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99814 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46903 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47095 * 120.00080 * 8 6 4 11 11 H 1.48506 * 109.46887 * 240.00006 * 8 6 4 12 12 C 1.50706 * 109.47186 * 240.00754 * 2 1 3 13 13 O 1.20758 * 119.99420 * 269.99833 * 12 2 1 14 14 C 1.50693 * 120.00436 * 89.72023 * 12 2 1 15 15 H 1.09008 * 109.47122 * 330.00508 * 14 12 2 16 16 C 1.53008 * 109.47010 * 89.99846 * 14 12 2 17 17 C 1.53003 * 109.47175 * 180.02562 * 16 14 12 18 18 C 1.53000 * 109.46845 * 300.00428 * 17 16 14 19 19 C 1.52999 * 109.47523 * 59.99709 * 18 17 16 20 20 H 1.09001 * 109.46864 * 59.99772 * 19 18 17 21 21 C 1.52995 * 109.47110 * 179.97438 * 19 18 17 22 22 C 1.52994 * 109.47299 * 300.00208 * 19 18 17 23 23 H 1.09002 * 109.47171 * 299.99397 * 1 2 3 24 24 H 1.09004 * 109.47223 * 59.99900 * 1 2 3 25 25 H 1.08997 * 109.46785 * 179.97438 * 1 2 3 26 26 H 0.96994 * 120.00630 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47317 * 300.00171 * 16 14 12 28 28 H 1.08996 * 109.46940 * 60.00160 * 16 14 12 29 29 H 1.09006 * 109.46875 * 59.99821 * 17 16 14 30 30 H 1.09000 * 109.47130 * 180.02562 * 17 16 14 31 31 H 1.08994 * 109.47052 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.47237 * 299.99709 * 18 17 16 33 33 H 1.09001 * 109.47225 * 60.00260 * 21 19 18 34 34 H 1.09001 * 109.47457 * 179.97438 * 21 19 18 35 35 H 1.08994 * 109.47477 * 300.00369 * 21 19 18 36 36 H 1.08996 * 109.47181 * 299.99845 * 22 19 18 37 37 H 1.09000 * 109.47132 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9435 0.8300 2.6035 8 14 2.3215 -1.1206 4.0078 9 1 3.1456 -2.2879 3.6035 10 1 3.1466 -0.1877 4.8165 11 1 1.1661 -1.5871 4.8159 12 6 2.0324 -0.7103 -1.2306 13 8 2.2336 -1.9006 -1.2007 14 6 2.2775 0.0637 -2.5001 15 1 1.5933 0.9110 -2.5470 16 6 3.7206 0.5722 -2.5168 17 6 3.9694 1.3586 -3.8054 18 6 3.7356 0.4474 -5.0121 19 6 2.2927 -0.0610 -4.9954 20 1 1.6084 0.7862 -5.0418 21 6 2.0588 -0.9716 -6.2024 22 6 2.0439 -0.8473 -3.7068 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7095 1.1615 3.4844 27 1 3.8869 1.2217 -1.6573 28 1 4.4048 -0.2749 -2.4698 29 1 3.2850 2.2058 -3.8519 30 1 4.9975 1.7205 -3.8175 31 1 3.9133 1.0075 -5.9301 32 1 4.4199 -0.3998 -4.9656 33 1 2.7431 -1.8189 -6.1563 34 1 1.0310 -1.3343 -6.1903 35 1 2.2360 -0.4111 -7.1202 36 1 2.7281 -1.6945 -3.6602 37 1 1.0158 -1.2092 -3.6947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084341501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:53 Heat of formation + Delta-G solvation = -97.545143 kcal Electronic energy + Delta-G solvation = -15959.219098 eV Core-core repulsion = 13506.157406 eV Total energy + Delta-G solvation = -2453.061692 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98652 -38.72948 -35.80935 -33.68124 -32.58818 -31.68170 -27.37875 -27.21554 -25.70139 -23.13346 -22.48845 -20.63051 -19.81723 -18.38718 -17.14026 -16.58941 -16.05912 -15.64774 -15.31557 -15.12560 -14.85375 -14.53131 -14.04189 -13.63874 -13.36962 -13.25037 -13.04823 -12.73307 -12.72852 -12.64898 -12.30825 -12.23588 -12.09215 -11.99113 -11.80503 -11.41563 -11.31921 -11.06249 -10.93179 -10.56171 -9.85746 -8.17094 -6.30251 1.31289 1.36352 1.38934 1.51328 2.39302 3.10072 3.33931 3.76018 3.83575 4.07786 4.21308 4.26029 4.47401 4.53925 4.59628 4.66979 4.71489 4.77390 4.85145 4.90726 4.98817 5.04011 5.04255 5.09213 5.19180 5.22678 5.31765 5.37835 5.41475 5.44119 5.50517 5.62621 5.68301 5.92747 6.20693 6.74851 6.96114 7.37583 8.87744 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.045532 B = 0.006555 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.809704 B = 4270.388826 C = 4358.577406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.010 4.010 3 H 0.041 0.959 4 C -0.532 4.532 5 H 0.041 0.959 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.275 1.275 12 C 0.369 3.631 13 O -0.504 6.504 14 C -0.131 4.131 15 H 0.103 0.897 16 C -0.104 4.104 17 C -0.110 4.110 18 C -0.112 4.112 19 C -0.087 4.087 20 H 0.079 0.921 21 C -0.144 4.144 22 C -0.097 4.097 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.018 0.982 26 H 0.265 0.735 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 2.877 -15.069 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.029 4.029 3 H 0.059 0.941 4 C -0.570 4.570 5 H 0.059 0.941 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.201 1.201 12 C 0.248 3.752 13 O -0.380 6.380 14 C -0.150 4.150 15 H 0.121 0.879 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.106 4.106 20 H 0.098 0.902 21 C -0.201 4.201 22 C -0.134 4.134 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.087 2.364 -14.921 15.420 hybrid contribution 0.107 -0.575 1.394 1.512 sum 3.194 1.789 -13.528 14.014 Atomic orbital electron populations 1.21486 0.95487 0.99105 1.01554 1.19266 0.95095 0.96729 0.91839 0.94097 1.21280 1.31831 1.12270 0.91608 0.94066 1.25622 0.95125 0.95695 1.01514 1.69954 1.37097 1.23558 1.24287 0.85571 0.78398 0.78640 0.79467 1.20364 1.19623 1.20057 1.25448 0.69882 0.88524 0.91344 1.90189 1.41683 1.19671 1.86460 1.21786 1.00168 0.99831 0.93252 0.87921 1.21399 0.93089 0.99852 0.99835 1.21513 1.02547 0.98043 0.92611 1.21612 0.95656 0.99220 0.98412 1.21133 0.97843 0.98300 0.93304 0.90248 1.21800 1.01479 0.99401 0.97433 1.21459 1.00918 0.97545 0.93512 0.90971 0.93420 0.96239 0.92535 0.92157 0.93190 0.90729 0.90392 0.89764 0.92622 0.93185 0.92846 0.90937 0.93081 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.95 71.98 0.64 -5.10 16 2 C -0.01 -0.53 2.56 -12.28 -0.03 -0.56 16 3 H 0.04 2.14 8.12 -2.38 -0.02 2.12 16 4 C -0.53 -31.07 8.32 25.60 0.21 -30.86 16 5 H 0.04 2.54 7.14 -2.91 -0.02 2.52 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -51.84 11.32 21.45 0.24 -51.60 16 8 Si 0.95 45.07 29.54 68.60 2.03 47.09 16 9 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 C 0.37 16.86 5.27 29.10 0.15 17.01 16 13 O -0.50 -26.15 15.77 -1.44 -0.02 -26.17 16 14 C -0.13 -4.44 2.45 -11.54 -0.03 -4.46 16 15 H 0.10 3.17 8.12 -2.38 -0.02 3.15 16 16 C -0.10 -3.14 5.19 30.60 0.16 -2.98 16 17 C -0.11 -2.37 5.92 30.60 0.18 -2.19 16 18 C -0.11 -2.18 5.20 30.59 0.16 -2.02 16 19 C -0.09 -1.89 2.72 -10.80 -0.03 -1.92 16 20 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 21 C -0.14 -2.65 9.19 71.98 0.66 -1.98 16 22 C -0.10 -2.88 4.08 30.59 0.12 -2.76 16 23 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 24 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.69 7.86 -2.39 -0.02 1.67 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -64.43 294.58 5.91 -58.52 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.00 Total: 8.41 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 2.66 Total: -36.26 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.24 Total: -51.60 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.02 Total: -26.17 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.43 5.91 -58.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084341501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.024 kcal (2) G-P(sol) polarization free energy of solvation -64.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds