Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99640 * 2 1 4 4 H 1.48499 * 109.47023 * 269.99621 * 3 2 1 5 5 H 1.48495 * 109.47613 * 30.00215 * 3 2 1 6 6 H 1.48503 * 109.46652 * 150.00137 * 3 2 1 7 7 C 1.37881 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99855 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99937 * 180.02562 * 7 2 1 10 10 N 1.46894 * 109.47221 * 185.14541 * 9 7 2 11 11 C 1.46898 * 111.00275 * 295.89008 * 10 9 7 12 12 C 1.52999 * 117.49743 * 357.41391 * 11 10 9 13 13 C 1.53001 * 117.49786 * 288.75459 * 11 10 9 14 14 C 1.46904 * 110.99602 * 59.84173 * 10 9 7 15 15 H 1.09000 * 109.50331 * 295.96729 * 14 10 9 16 16 C 1.53120 * 109.50502 * 56.04846 * 14 10 9 17 17 C 1.53110 * 109.16163 * 177.59415 * 16 14 10 18 18 C 1.53030 * 109.28070 * 302.34211 * 17 16 14 19 19 N 1.46844 * 109.52408 * 59.18137 * 18 17 16 20 20 C 1.46855 * 111.19807 * 298.26004 * 19 18 17 21 21 H 0.96997 * 120.00045 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47019 * 305.15491 * 9 7 2 23 23 H 1.09008 * 109.46826 * 65.15049 * 9 7 2 24 24 H 1.09004 * 115.55303 * 143.08193 * 11 10 9 25 25 H 1.09000 * 117.49944 * 359.97438 * 12 11 10 26 26 H 1.08998 * 117.49818 * 145.02085 * 12 11 10 27 27 H 1.08996 * 117.49387 * 214.98038 * 13 11 10 28 28 H 1.09000 * 117.49925 * 359.97038 * 13 11 10 29 29 H 1.09011 * 109.51887 * 297.50032 * 16 14 10 30 30 H 1.08993 * 109.52446 * 57.61881 * 16 14 10 31 31 H 1.09001 * 109.50520 * 62.29045 * 17 16 14 32 32 H 1.09009 * 109.50480 * 182.40271 * 17 16 14 33 33 H 1.09002 * 109.46670 * 179.19738 * 18 17 16 34 34 H 1.09007 * 109.46553 * 299.16419 * 18 17 16 35 35 H 1.00897 * 111.00580 * 174.16462 * 19 18 17 36 36 H 1.09001 * 109.46039 * 301.72682 * 20 19 18 37 37 H 1.08991 * 109.46379 * 181.75716 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0013 -2.5733 -0.1249 11 6 3.6119 -3.3779 1.0408 12 6 2.8543 -2.6705 2.1662 13 6 4.3141 -3.0846 2.3681 14 6 3.5277 -3.1891 -1.3717 15 1 2.4408 -3.2687 -1.3482 16 6 3.9514 -2.3244 -2.5622 17 6 3.5064 -3.0036 -3.8602 18 6 4.1193 -4.4039 -3.9337 19 7 3.6834 -5.1918 -2.7737 20 6 4.1400 -4.5841 -1.5172 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6018 -0.8396 23 1 3.8745 -0.7628 0.9331 24 1 3.3471 -4.4140 0.8296 25 1 2.6453 -1.6080 2.0418 26 1 2.0915 -3.2413 2.6957 27 1 4.5109 -3.9277 3.0302 28 1 5.0654 -2.2950 2.3763 29 1 3.4825 -1.3434 -2.4850 30 1 5.0354 -2.2109 -2.5624 31 1 2.4193 -3.0808 -3.8765 32 1 3.8427 -2.4140 -4.7133 33 1 3.7929 -4.8956 -4.8501 34 1 5.2065 -4.3252 -3.9315 35 1 3.9968 -6.1480 -2.8477 36 1 5.2270 -4.5045 -1.5262 37 1 3.8286 -5.2067 -0.6785 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086432393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = 37.786408 kcal Electronic energy + Delta-G solvation = -16520.041792 eV Core-core repulsion = 14105.141267 eV Total energy + Delta-G solvation = -2414.900524 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.02977 -36.95347 -33.45357 -32.29347 -31.21627 -29.20065 -26.66871 -23.70621 -22.21681 -21.69106 -21.43058 -19.49074 -18.49998 -16.74937 -16.71603 -15.23403 -14.66633 -14.34154 -13.98132 -13.88208 -13.36048 -12.94741 -12.58511 -12.32951 -12.15068 -11.94815 -11.36524 -11.16817 -10.80444 -10.66178 -10.48215 -10.39569 -9.99056 -9.92494 -9.76783 -9.66463 -9.34979 -9.19687 -8.56166 -8.19693 -7.05189 -6.08277 -4.04935 3.26327 3.35039 3.38266 4.30540 4.39910 4.68400 5.05030 5.25539 5.26130 5.34308 5.44218 5.67672 5.69641 5.78081 5.87291 5.96477 5.99776 6.08231 6.17077 6.20456 6.31670 6.45905 6.47679 6.60675 6.82977 6.86910 6.95734 7.02699 7.10964 7.24559 7.33175 7.57340 7.61499 8.07849 8.19370 8.47889 8.97830 9.53595 11.04492 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.011146 C = 0.008715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.935112 B = 2511.436181 C = 3212.100540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.078 0.922 9 C 0.149 3.851 10 N -0.504 5.504 11 C 0.029 3.971 12 C -0.186 4.186 13 C -0.194 4.194 14 C 0.099 3.901 15 H 0.064 0.936 16 C -0.111 4.111 17 C -0.116 4.116 18 C 0.061 3.939 19 N -0.690 5.690 20 C 0.065 3.935 21 H 0.262 0.738 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.097 0.903 25 H 0.129 0.871 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.025 0.975 35 H 0.336 0.664 36 H 0.031 0.969 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.598 -7.048 -3.467 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.697 3.303 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.096 0.904 9 C 0.023 3.977 10 N -0.226 5.226 11 C -0.081 4.081 12 C -0.224 4.224 13 C -0.232 4.232 14 C -0.009 4.009 15 H 0.082 0.918 16 C -0.149 4.149 17 C -0.154 4.154 18 C -0.069 4.069 19 N -0.321 5.321 20 C -0.065 4.065 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.115 0.885 25 H 0.147 0.853 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.153 0.847 36 H 0.049 0.951 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.349 -6.605 -3.478 11.200 hybrid contribution 0.383 0.695 0.063 0.796 sum 8.732 -5.910 -3.415 11.083 Atomic orbital electron populations 1.69919 1.06233 1.26797 1.50540 1.24932 0.94627 0.98822 0.94683 0.86932 0.80492 0.84198 0.78643 1.20237 1.21347 1.18968 1.21629 0.90183 0.94686 1.50811 0.90398 1.20319 0.94941 0.85748 0.96689 1.62237 1.57241 1.03290 0.99795 1.22294 1.02527 0.96599 0.86636 1.23672 0.92137 1.04561 1.02069 1.23085 0.97143 1.02892 1.00062 1.21323 0.98906 0.91271 0.89435 0.91834 1.21597 1.00175 0.99927 0.93181 1.21567 1.01725 0.94454 0.97689 1.21908 0.96741 0.95104 0.93122 1.60180 1.64664 1.05056 1.02177 1.22031 0.97121 0.96356 0.90964 0.92768 0.95389 0.95448 0.88510 0.85275 0.90634 0.90275 0.89585 0.90527 0.92770 0.91034 0.92065 0.91472 0.95702 0.84655 0.95093 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.07 27.37 -169.99 -4.65 16.42 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.21 6.69 56.52 0.38 -5.83 16 7 C -0.53 -14.24 6.10 -34.44 -0.21 -14.45 16 8 H 0.08 2.31 6.55 -52.49 -0.34 1.96 16 9 C 0.15 3.50 3.22 -4.98 -0.02 3.49 16 10 N -0.50 -10.43 4.77 -220.05 -1.05 -11.48 16 11 C 0.03 0.57 5.21 -67.71 -0.35 0.22 16 12 C -0.19 -3.79 8.43 -26.69 -0.23 -4.01 16 13 C -0.19 -3.42 10.18 -26.69 -0.27 -3.69 16 14 C 0.10 1.94 1.70 -67.63 -0.11 1.82 16 15 H 0.06 1.48 6.70 -51.93 -0.35 1.13 16 16 C -0.11 -2.04 4.83 -26.61 -0.13 -2.16 16 17 C -0.12 -1.81 6.09 -26.66 -0.16 -1.97 16 18 C 0.06 0.82 6.55 -3.84 -0.03 0.80 16 19 N -0.69 -10.00 6.85 -113.82 -0.78 -10.78 16 20 C 0.06 1.05 5.71 -3.83 -0.02 1.03 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.03 0.67 5.45 -51.93 -0.28 0.38 16 23 H 0.03 0.66 6.17 -51.92 -0.32 0.34 16 24 H 0.10 1.77 6.08 -51.93 -0.32 1.46 16 25 H 0.13 3.04 4.88 -51.93 -0.25 2.79 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.08 1.59 6.51 -51.92 -0.34 1.25 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.34 3.97 8.90 -39.29 -0.35 3.62 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.10 6.21 -51.93 -0.32 0.78 16 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -28.54 276.37 -9.01 -37.54 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.84 Total: 7.18 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -1.63 Total: -17.04 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -1.05 Total: -48.26 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.65 Total: 16.42 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.54 -9.01 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.329 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds