Wall clock time and date at job start Mon Mar 30 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48493 * 109.47432 * 272.98979 * 3 2 1 5 5 H 1.48503 * 109.47158 * 32.99569 * 3 2 1 6 6 H 1.48509 * 109.47004 * 152.98892 * 3 2 1 7 7 C 1.38819 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99685 * 339.33538 * 7 2 1 9 9 N 1.36937 * 120.00027 * 159.33691 * 7 2 1 10 10 C 1.46924 * 120.63068 * 152.51481 * 9 7 2 11 11 C 1.53188 * 108.77630 * 126.41350 * 10 9 7 12 12 H 1.09006 * 109.52394 * 294.66780 * 11 10 9 13 13 N 1.46896 * 109.49952 * 174.58613 * 11 10 9 14 14 C 1.53044 * 109.31279 * 54.63429 * 11 10 9 15 15 C 1.53039 * 109.53813 * 298.63471 * 14 11 10 16 16 H 1.09007 * 109.49824 * 301.38324 * 15 14 11 17 17 C 1.52998 * 109.49806 * 181.31712 * 15 14 11 18 18 C 1.53000 * 109.47126 * 175.00131 * 17 15 14 19 19 C 1.53009 * 117.49731 * 243.62172 * 18 17 15 20 20 C 1.53002 * 59.99910 * 252.50758 * 19 18 17 21 21 C 1.46933 * 120.62745 * 332.53738 * 9 7 2 22 22 H 0.97001 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.58695 * 6.62311 * 10 9 7 24 24 H 1.08996 * 109.70237 * 246.26795 * 10 9 7 25 25 H 1.00900 * 111.00149 * 60.16094 * 13 11 10 26 26 H 1.00901 * 111.00063 * 184.11582 * 13 11 10 27 27 H 1.09000 * 109.46104 * 178.61807 * 14 11 10 28 28 H 1.08997 * 109.45062 * 58.64914 * 14 11 10 29 29 H 1.09001 * 109.47135 * 55.00383 * 17 15 14 30 30 H 1.08995 * 109.47197 * 294.99865 * 17 15 14 31 31 H 1.08997 * 115.56486 * 29.30617 * 18 17 15 32 32 H 1.08994 * 117.50044 * 0.02562 * 19 18 17 33 33 H 1.09004 * 117.49404 * 145.01909 * 19 18 17 34 34 H 1.08997 * 117.50218 * 252.51059 * 20 19 18 35 35 H 1.08998 * 117.49423 * 107.48611 * 20 19 18 36 36 H 1.08999 * 109.58515 * 113.80016 * 21 9 7 37 37 H 1.08990 * 109.58682 * 353.37317 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4344 2.0830 -1.3981 5 1 1.4806 2.6336 0.7625 6 1 3.5779 1.4227 0.6359 7 6 2.0102 -1.2022 -0.0005 8 1 1.5223 -2.1075 0.3291 9 7 3.3135 -1.2401 -0.4190 10 6 4.2355 -2.2618 0.0956 11 6 4.8759 -2.9902 -1.0902 12 1 4.1100 -3.5412 -1.6360 13 7 5.8960 -3.9257 -0.5981 14 6 5.5290 -1.9656 -2.0208 15 6 4.4616 -1.0105 -2.5600 16 1 3.6995 -1.5798 -3.0922 17 6 5.1101 -0.0071 -3.5157 18 6 4.0263 0.8670 -4.1498 19 6 3.8382 0.7710 -5.6652 20 6 4.4829 2.0156 -5.0516 21 6 3.8165 -0.2596 -1.3909 22 1 -0.4850 0.8400 0.0004 23 1 3.6851 -2.9752 0.7087 24 1 5.0121 -1.7873 0.6955 25 1 5.4891 -4.6126 0.0190 26 1 6.3795 -4.3695 -1.3645 27 1 6.0066 -2.4832 -2.8527 28 1 6.2778 -1.3985 -1.4679 29 1 5.6468 -0.5446 -4.2975 30 1 5.8075 0.6225 -2.9632 31 1 3.1363 1.0281 -3.5414 32 1 4.4862 0.0849 -6.2104 33 1 2.8244 0.8690 -6.0537 34 1 3.8934 2.9323 -5.0365 35 1 5.5554 2.1484 -5.1932 36 1 4.5587 0.3803 -0.9135 37 1 2.9896 0.3478 -1.7585 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108005754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:23 Heat of formation + Delta-G solvation = 35.359006 kcal Electronic energy + Delta-G solvation = -16265.626305 eV Core-core repulsion = 13850.620520 eV Total energy + Delta-G solvation = -2415.005785 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.69850 -36.95118 -34.09801 -32.94057 -31.18195 -28.18036 -26.46351 -25.28729 -22.25709 -21.99166 -21.24043 -19.70736 -19.22185 -16.79462 -15.56474 -15.34021 -15.27250 -14.78362 -14.12541 -13.99427 -13.46736 -13.14167 -12.88458 -12.28864 -12.07660 -11.74792 -11.53107 -11.38383 -11.26580 -10.97376 -10.67251 -10.54161 -10.19527 -10.05562 -9.72740 -9.62665 -9.52760 -9.38271 -8.61172 -8.38672 -6.94354 -5.93468 -3.28738 3.33503 3.50425 3.54992 3.99272 4.54783 4.60252 4.89398 5.10398 5.11649 5.18823 5.32577 5.41223 5.51765 5.60362 5.68002 5.74852 5.78937 5.95335 6.02905 6.09477 6.21229 6.23455 6.25425 6.30649 6.43421 6.55373 6.65481 6.66409 6.77791 6.80355 7.01683 7.44743 7.69775 7.99494 8.34420 8.96888 9.74289 10.12952 11.22495 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.014394 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.306175 B = 1944.836352 C = 3287.600287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.880 3.120 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.084 0.916 9 N -0.606 5.606 10 C 0.158 3.842 11 C 0.071 3.929 12 H 0.034 0.966 13 N -0.848 5.848 14 C -0.096 4.096 15 C -0.102 4.102 16 H 0.072 0.928 17 C -0.079 4.079 18 C -0.151 4.151 19 C -0.181 4.181 20 C -0.186 4.186 21 C 0.133 3.867 22 H 0.262 0.738 23 H 0.057 0.943 24 H 0.031 0.969 25 H 0.338 0.662 26 H 0.333 0.667 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.024 0.976 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.889 -1.683 -7.941 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.710 3.290 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.102 0.898 9 N -0.329 5.329 10 C 0.031 3.969 11 C -0.042 4.042 12 H 0.053 0.947 13 N -0.377 5.377 14 C -0.134 4.134 15 C -0.122 4.122 16 H 0.091 0.909 17 C -0.117 4.117 18 C -0.169 4.169 19 C -0.218 4.218 20 C -0.223 4.223 21 C 0.008 3.992 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.150 0.850 26 H 0.144 0.856 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.042 0.958 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.043 -0.951 -7.565 13.420 hybrid contribution -0.216 0.259 -0.552 0.647 sum 10.827 -0.692 -8.118 13.550 Atomic orbital electron populations 1.69835 1.05720 1.26513 1.53121 1.25251 0.95196 0.97526 0.99493 0.86995 0.80135 0.84669 0.77185 1.21360 1.23231 1.19490 1.18913 0.84957 0.94753 1.40126 0.89808 1.44318 1.08630 1.33332 1.46615 1.20833 0.92181 0.91241 0.92625 1.21914 0.91757 0.93203 0.97291 0.94749 1.58715 1.32277 1.23524 1.23184 1.21445 0.97613 0.96728 0.97596 1.21647 0.97362 0.96376 0.96852 0.90935 1.21170 0.96104 0.96529 0.97878 1.22516 1.01728 1.00116 0.92525 1.22983 1.01760 1.00847 0.96234 1.22931 1.00662 0.93105 1.05651 1.21425 0.97148 0.91810 0.88843 0.92807 0.92418 0.95117 0.85020 0.85568 0.93440 0.91870 0.92322 0.91883 0.87179 0.89122 0.89119 0.89184 0.89128 0.95789 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.09 13.97 55.49 0.78 -27.31 16 2 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 3 Si 0.88 22.72 24.35 -169.99 -4.14 18.58 16 4 H -0.29 -7.03 6.62 56.52 0.37 -6.66 16 5 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 6 H -0.27 -6.93 6.64 56.52 0.38 -6.56 16 7 C -0.26 -7.36 10.03 -15.06 -0.15 -7.51 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.61 -14.72 2.77 -172.33 -0.48 -15.20 16 10 C 0.16 3.26 6.10 -3.71 -0.02 3.24 16 11 C 0.07 1.21 3.40 -67.59 -0.23 0.98 16 12 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 13 N -0.85 -11.76 9.25 -4.56 -0.04 -11.80 16 14 C -0.10 -1.56 4.71 -26.69 -0.13 -1.68 16 15 C -0.10 -1.82 2.33 -90.50 -0.21 -2.03 16 16 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 17 C -0.08 -1.20 4.97 -26.73 -0.13 -1.34 16 18 C -0.15 -2.38 5.53 -90.61 -0.50 -2.88 16 19 C -0.18 -2.41 10.18 -26.73 -0.27 -2.68 16 20 C -0.19 -2.48 10.25 -26.73 -0.27 -2.75 16 21 C 0.13 2.95 3.20 -3.71 -0.01 2.94 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.34 4.24 9.04 -39.29 -0.36 3.89 16 26 H 0.33 3.90 8.99 -39.29 -0.35 3.55 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.79 7.88 -51.93 -0.41 0.38 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.11 2.06 6.48 -51.93 -0.34 1.72 16 32 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.02 0.54 7.07 -51.93 -0.37 0.18 16 37 H 0.07 1.77 2.99 -51.93 -0.16 1.62 16 LS Contribution 284.68 15.07 4.29 4.29 Total: -1.00 -30.36 284.68 -7.84 -38.20 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.22 Total: 6.36 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.02 Total: -13.12 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.26 Total: -54.32 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.14 Total: 18.58 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.36 -7.84 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.558 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds