Wall clock time and date at job start Mon Mar 30 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48493 * 109.47432 * 272.98979 * 3 2 1 5 5 H 1.48503 * 109.47158 * 32.99569 * 3 2 1 6 6 H 1.48509 * 109.47004 * 152.98892 * 3 2 1 7 7 C 1.38819 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99685 * 339.33538 * 7 2 1 9 9 N 1.36937 * 120.00027 * 159.33691 * 7 2 1 10 10 C 1.46924 * 120.63068 * 152.51481 * 9 7 2 11 11 C 1.53188 * 108.77630 * 126.41350 * 10 9 7 12 12 H 1.09006 * 109.52394 * 294.66780 * 11 10 9 13 13 N 1.46896 * 109.49952 * 174.58613 * 11 10 9 14 14 C 1.53044 * 109.31279 * 54.63429 * 11 10 9 15 15 C 1.53039 * 109.53813 * 298.63471 * 14 11 10 16 16 H 1.09007 * 109.49824 * 301.38324 * 15 14 11 17 17 C 1.52998 * 109.49806 * 181.31712 * 15 14 11 18 18 C 1.53000 * 109.47126 * 175.00131 * 17 15 14 19 19 C 1.53009 * 117.49731 * 243.62172 * 18 17 15 20 20 C 1.53002 * 59.99910 * 252.50758 * 19 18 17 21 21 C 1.46933 * 120.62745 * 332.53738 * 9 7 2 22 22 H 0.97001 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.58695 * 6.62311 * 10 9 7 24 24 H 1.08996 * 109.70237 * 246.26795 * 10 9 7 25 25 H 1.00900 * 111.00149 * 60.16094 * 13 11 10 26 26 H 1.00901 * 111.00063 * 184.11582 * 13 11 10 27 27 H 1.09000 * 109.46104 * 178.61807 * 14 11 10 28 28 H 1.08997 * 109.45062 * 58.64914 * 14 11 10 29 29 H 1.09001 * 109.47135 * 55.00383 * 17 15 14 30 30 H 1.08995 * 109.47197 * 294.99865 * 17 15 14 31 31 H 1.08997 * 115.56486 * 29.30617 * 18 17 15 32 32 H 1.08994 * 117.50044 * 0.02562 * 19 18 17 33 33 H 1.09004 * 117.49404 * 145.01909 * 19 18 17 34 34 H 1.08997 * 117.50218 * 252.51059 * 20 19 18 35 35 H 1.08998 * 117.49423 * 107.48611 * 20 19 18 36 36 H 1.08999 * 109.58515 * 113.80016 * 21 9 7 37 37 H 1.08990 * 109.58682 * 353.37317 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4344 2.0830 -1.3981 5 1 1.4806 2.6336 0.7625 6 1 3.5779 1.4227 0.6359 7 6 2.0102 -1.2022 -0.0005 8 1 1.5223 -2.1075 0.3291 9 7 3.3135 -1.2401 -0.4190 10 6 4.2355 -2.2618 0.0956 11 6 4.8759 -2.9902 -1.0902 12 1 4.1100 -3.5412 -1.6360 13 7 5.8960 -3.9257 -0.5981 14 6 5.5290 -1.9656 -2.0208 15 6 4.4616 -1.0105 -2.5600 16 1 3.6995 -1.5798 -3.0922 17 6 5.1101 -0.0071 -3.5157 18 6 4.0263 0.8670 -4.1498 19 6 3.8382 0.7710 -5.6652 20 6 4.4829 2.0156 -5.0516 21 6 3.8165 -0.2596 -1.3909 22 1 -0.4850 0.8400 0.0004 23 1 3.6851 -2.9752 0.7087 24 1 5.0121 -1.7873 0.6955 25 1 5.4891 -4.6126 0.0190 26 1 6.3795 -4.3695 -1.3645 27 1 6.0066 -2.4832 -2.8527 28 1 6.2778 -1.3985 -1.4679 29 1 5.6468 -0.5446 -4.2975 30 1 5.8075 0.6225 -2.9632 31 1 3.1363 1.0281 -3.5414 32 1 4.4862 0.0849 -6.2104 33 1 2.8244 0.8690 -6.0537 34 1 3.8934 2.9323 -5.0365 35 1 5.5554 2.1484 -5.1932 36 1 4.5587 0.3803 -0.9135 37 1 2.9896 0.3478 -1.7585 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108005754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:23 Heat of formation + Delta-G solvation = 14.299368 kcal Electronic energy + Delta-G solvation = -16266.539519 eV Core-core repulsion = 13850.620520 eV Total energy + Delta-G solvation = -2415.918999 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17919 -38.18294 -35.79945 -34.42894 -33.21659 -29.58689 -27.86903 -27.23186 -23.76957 -23.26451 -22.70001 -21.00311 -20.74220 -18.83830 -17.39562 -16.64554 -16.51726 -16.24231 -15.70164 -15.37700 -15.01661 -14.84628 -14.70756 -13.76180 -13.56076 -13.44793 -13.11139 -12.86703 -12.62078 -12.36395 -12.30888 -12.16926 -11.84551 -11.56564 -11.52001 -11.24321 -10.94171 -10.72725 -10.67961 -9.59511 -8.96236 -8.20969 -5.52221 1.25800 1.36441 1.46026 2.37483 2.89583 3.01249 3.22735 3.56719 3.86502 3.95451 3.98578 4.09409 4.13837 4.21874 4.32550 4.41008 4.55434 4.64813 4.75087 4.77547 4.88796 4.95114 4.96903 5.01337 5.06996 5.17767 5.25248 5.26819 5.29267 5.41709 5.54896 5.82034 6.08064 6.26186 6.68908 6.88959 7.58966 7.99947 8.98863 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.014394 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.306175 B = 1944.836352 C = 3287.600287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.030 4.030 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.310 1.310 6 H -0.266 1.266 7 C -0.251 4.251 8 H 0.051 0.949 9 N -0.620 5.620 10 C 0.153 3.847 11 C 0.083 3.917 12 H 0.021 0.979 13 N -0.841 5.841 14 C -0.090 4.090 15 C -0.093 4.093 16 H 0.055 0.945 17 C -0.069 4.069 18 C -0.183 4.183 19 C -0.171 4.171 20 C -0.173 4.173 21 C 0.130 3.870 22 H 0.262 0.738 23 H 0.047 0.953 24 H 0.032 0.968 25 H 0.346 0.654 26 H 0.351 0.649 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.025 0.975 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.945 -1.602 -9.626 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.225 4.225 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.239 1.239 6 H -0.190 1.190 7 C -0.381 4.381 8 H 0.069 0.931 9 N -0.345 5.345 10 C 0.028 3.972 11 C -0.030 4.030 12 H 0.039 0.961 13 N -0.373 5.373 14 C -0.127 4.127 15 C -0.114 4.114 16 H 0.074 0.926 17 C -0.106 4.106 18 C -0.201 4.201 19 C -0.208 4.208 20 C -0.210 4.210 21 C 0.006 3.994 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.159 0.841 26 H 0.165 0.835 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.043 0.957 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.154 -0.894 -9.269 16.942 hybrid contribution -1.187 0.130 0.000 1.194 sum 12.967 -0.765 -9.269 15.957 Atomic orbital electron populations 1.69953 1.07279 1.27201 1.55629 1.25835 0.95788 1.00700 1.00189 0.85979 0.78647 0.80512 0.77765 1.19736 1.23857 1.19029 1.18867 0.86763 0.93586 1.38844 0.93081 1.44451 1.07762 1.34641 1.47597 1.20963 0.91498 0.90496 0.94249 1.21600 0.92188 0.93712 0.95509 0.96079 1.58609 1.31020 1.23754 1.23892 1.21412 0.96809 0.96152 0.98377 1.21498 0.97521 0.96851 0.95488 0.92621 1.21104 0.95762 0.95879 0.97890 1.22415 1.01099 1.02882 0.93689 1.23086 1.02262 1.01188 0.94273 1.23035 1.01970 0.92601 1.03420 1.21454 0.96446 0.91696 0.89850 0.92905 0.93390 0.95032 0.84088 0.83522 0.90119 0.91652 0.89391 0.91304 0.91100 0.87010 0.89346 0.89213 0.86946 0.95743 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.26 13.97 21.65 0.30 -60.96 16 2 C -0.03 -1.81 5.23 84.87 0.44 -1.37 16 3 Si 0.94 48.24 24.35 68.60 1.67 49.91 16 4 H -0.27 -13.07 6.62 99.48 0.66 -12.41 16 5 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 6 H -0.27 -13.24 6.64 99.48 0.66 -12.58 16 7 C -0.25 -14.76 10.03 84.04 0.84 -13.92 16 8 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 9 N -0.62 -30.44 2.77 -699.11 -1.94 -32.38 16 10 C 0.15 6.27 6.10 86.36 0.53 6.80 16 11 C 0.08 2.66 3.40 44.99 0.15 2.81 16 12 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 13 N -0.84 -20.83 9.25 -168.36 -1.56 -22.39 16 14 C -0.09 -2.62 4.71 30.62 0.14 -2.47 16 15 C -0.09 -3.16 2.33 -10.72 -0.03 -3.19 16 16 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 17 C -0.07 -1.88 4.97 30.59 0.15 -1.72 16 18 C -0.18 -5.44 5.53 -10.79 -0.06 -5.50 16 19 C -0.17 -4.09 10.18 30.60 0.31 -3.77 16 20 C -0.17 -4.09 10.25 30.60 0.31 -3.78 16 21 C 0.13 5.70 3.20 86.36 0.28 5.98 16 22 H 0.26 15.96 8.31 -92.71 -0.77 15.18 16 23 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.35 7.85 9.04 -89.69 -0.81 7.04 16 26 H 0.35 6.85 8.99 -89.69 -0.81 6.04 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 1.92 7.88 -2.39 -0.02 1.90 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 2.67 6.48 -2.39 -0.02 2.66 16 32 H 0.11 2.20 8.03 -2.39 -0.02 2.18 16 33 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 35 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.02 1.07 7.07 -2.39 -0.02 1.06 16 37 H 0.05 2.41 2.99 -2.39 -0.01 2.40 16 Total: -1.00 -67.49 284.68 0.90 -66.59 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.66 Total: 19.36 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 3.08 Total: -20.14 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -3.19 Total: -115.72 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.67 Total: 49.91 kcal Total: -67.49 0.90 -66.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.889 kcal (2) G-P(sol) polarization free energy of solvation -67.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds