Wall clock time and date at job start Mon Mar 30 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99992 * 2 1 4 4 H 1.48497 * 109.47584 * 274.06617 * 3 2 1 5 5 H 1.48499 * 109.47074 * 34.07121 * 3 2 1 6 6 H 1.48502 * 109.47138 * 154.06676 * 3 2 1 7 7 C 1.38806 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00523 * 197.50442 * 7 2 1 9 9 N 1.36936 * 120.00041 * 17.50091 * 7 2 1 10 10 C 1.46929 * 120.63043 * 207.96334 * 9 7 2 11 11 C 1.53195 * 108.77523 * 233.63223 * 10 9 7 12 12 C 1.53044 * 109.31094 * 305.36646 * 11 10 9 13 13 N 1.46904 * 109.45907 * 181.38900 * 12 11 10 14 14 C 1.48531 * 111.00127 * 57.60250 * 13 12 11 15 15 C 1.54936 * 103.22447 * 159.72200 * 14 13 12 16 16 C 1.54593 * 102.92311 * 322.58443 * 15 14 13 17 17 C 1.47907 * 110.99571 * 174.99886 * 13 12 11 18 18 C 1.53036 * 109.54093 * 61.36234 * 12 11 10 19 19 C 1.46924 * 120.63146 * 27.98674 * 9 7 2 20 20 H 0.97003 * 119.99965 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.58941 * 113.84748 * 10 9 7 22 22 H 1.08997 * 109.58781 * 353.41902 * 10 9 7 23 23 H 1.08995 * 109.50153 * 65.31604 * 11 10 9 24 24 H 1.09003 * 109.49794 * 185.41718 * 11 10 9 25 25 H 1.09005 * 109.45565 * 301.34294 * 12 11 10 26 26 H 1.09003 * 110.66578 * 278.15665 * 14 13 12 27 27 H 1.09000 * 110.66842 * 41.28694 * 14 13 12 28 28 H 1.08998 * 110.72096 * 204.22673 * 15 14 13 29 29 H 1.08999 * 110.72547 * 80.94411 * 15 14 13 30 30 H 1.09005 * 110.30811 * 263.04166 * 16 15 14 31 31 H 1.08998 * 110.31207 * 140.87571 * 16 15 14 32 32 H 1.08994 * 109.91844 * 333.50388 * 17 13 12 33 33 H 1.09000 * 109.91643 * 94.60194 * 17 13 12 34 34 H 1.08997 * 109.50008 * 178.68298 * 18 12 11 35 35 H 1.09003 * 109.52265 * 58.60569 * 18 12 11 36 36 H 1.08997 * 109.58393 * 246.15530 * 19 9 7 37 37 H 1.09001 * 109.58167 * 6.58124 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4118 2.0962 -1.3965 5 1 1.4933 2.6263 0.7844 6 1 3.5881 1.4169 0.6123 7 6 2.0102 -1.2021 -0.0005 8 1 3.0527 -1.2239 0.2808 9 7 1.3731 -2.3604 -0.3577 10 6 1.8151 -3.6543 0.1801 11 6 2.0772 -4.6102 -0.9881 12 6 0.8273 -4.6889 -1.8677 13 7 1.0635 -5.6303 -2.9705 14 6 1.4254 -6.9751 -2.4541 15 6 1.1178 -7.9091 -3.6514 16 6 -0.1613 -7.2862 -4.2562 17 6 -0.1630 -5.8236 -3.7742 18 6 0.5145 -3.3036 -2.4380 19 6 0.2349 -2.3330 -1.2863 20 1 -0.4850 0.8401 0.0004 21 1 1.0380 -4.0676 0.8230 22 1 2.7321 -3.5178 0.7532 23 1 2.9153 -4.2412 -1.5791 24 1 2.3128 -5.6016 -0.6011 25 1 -0.0162 -5.0345 -1.2700 26 1 2.4837 -7.0161 -2.1961 27 1 0.8084 -7.2359 -1.5943 28 1 0.9266 -8.9258 -3.3082 29 1 1.9339 -7.8918 -4.3738 30 1 -1.0457 -7.8066 -3.8886 31 1 -0.1232 -7.3258 -5.3448 32 1 -1.0432 -5.6363 -3.1593 33 1 -0.1570 -5.1477 -4.6293 34 1 -0.3619 -3.3651 -3.0830 35 1 1.3671 -2.9466 -3.0158 36 1 -0.6711 -2.6384 -0.7629 37 1 0.1093 -1.3246 -1.6806 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115818047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:15 Heat of formation + Delta-G solvation = 18.887436 kcal Electronic energy + Delta-G solvation = -16176.430488 eV Core-core repulsion = 13760.710443 eV Total energy + Delta-G solvation = -2415.720045 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.17112 -36.65390 -33.27101 -31.17174 -30.12203 -28.64256 -28.41794 -24.72244 -22.36380 -22.19559 -20.50229 -20.22840 -19.02909 -16.77914 -15.82719 -15.67347 -14.70274 -13.95799 -13.80760 -13.45871 -13.21766 -13.01543 -12.89619 -12.51681 -11.78779 -11.68994 -11.42222 -11.25105 -10.95482 -10.90520 -10.74771 -10.63265 -10.54945 -10.18963 -10.14158 -9.84909 -9.45832 -9.38087 -8.42486 -8.10054 -6.63025 -5.74761 -3.16562 3.41179 3.48040 3.49461 4.24919 4.53722 4.75762 4.78306 5.01503 5.38557 5.40093 5.48828 5.52655 5.60353 5.70486 5.79783 5.80984 5.85948 5.97296 6.08257 6.11854 6.18134 6.23918 6.40237 6.49891 6.61815 6.68697 6.76190 6.83424 7.06536 7.22212 7.44058 7.48043 7.71044 7.84186 8.49666 9.25816 9.89527 10.46711 11.34007 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.057933 B = 0.006465 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.199204 B = 4330.118463 C = 4542.762693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.147 3.853 11 C -0.124 4.124 12 C 0.087 3.913 13 N -0.516 5.516 14 C 0.035 3.965 15 C -0.123 4.123 16 C -0.131 4.131 17 C 0.037 3.963 18 C -0.129 4.129 19 C 0.172 3.828 20 H 0.253 0.747 21 H 0.014 0.986 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.047 0.953 25 H 0.032 0.968 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.015 0.985 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 -13.109 -6.297 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.164 4.164 12 C -0.021 4.021 13 N -0.240 5.240 14 C -0.093 4.093 15 C -0.162 4.162 16 C -0.169 4.169 17 C -0.092 4.092 18 C -0.169 4.169 19 C 0.046 3.954 20 H 0.063 0.937 21 H 0.032 0.968 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.033 0.967 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.586 -12.720 -6.580 14.333 hybrid contribution -0.360 0.542 0.503 0.823 sum 0.226 -12.179 -6.076 13.612 Atomic orbital electron populations 1.70045 1.05288 1.25411 1.54143 1.25032 0.95267 0.98407 1.01012 0.86273 0.79165 0.83738 0.77607 1.21473 1.21831 1.20387 1.19218 0.92757 0.84947 1.41059 0.91668 1.44063 1.36372 1.01422 1.49623 1.20896 0.97515 0.86910 0.92728 1.22101 0.97338 0.98805 0.98106 1.21781 0.96902 0.93063 0.90344 1.64880 1.30574 1.07374 1.21198 1.23183 1.01117 0.89064 0.95938 1.22476 0.97811 0.98072 0.97792 1.22402 0.97950 0.95715 1.00826 1.22806 0.92162 0.96011 0.98173 1.22242 1.00270 0.94471 0.99872 1.20772 0.88590 0.98259 0.87779 0.93701 0.96781 0.92657 0.91574 0.93408 0.94961 0.90227 0.94148 0.91555 0.90975 0.91913 0.91353 0.93964 0.90628 0.93631 0.91944 0.96727 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 11.22 55.49 0.62 -26.10 16 2 C 0.00 0.03 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 22.04 29.59 -169.99 -5.03 17.01 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -7.03 9.58 -15.06 -0.14 -7.17 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -15.32 2.99 -172.32 -0.52 -15.83 16 10 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 11 C -0.12 -2.30 5.19 -26.61 -0.14 -2.44 16 12 C 0.09 1.59 1.61 -67.67 -0.11 1.48 16 13 N -0.52 -8.15 5.11 -222.44 -1.14 -9.28 16 14 C 0.03 0.46 5.31 -1.90 -0.01 0.45 16 15 C -0.12 -1.34 7.06 -24.87 -0.18 -1.52 16 16 C -0.13 -1.44 6.93 -25.38 -0.18 -1.62 16 17 C 0.04 0.51 5.52 -2.75 -0.02 0.49 16 18 C -0.13 -2.63 5.36 -26.61 -0.14 -2.77 16 19 C 0.17 4.25 5.31 -3.71 -0.02 4.23 16 20 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 21 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 22 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.05 0.77 6.81 -51.93 -0.35 0.42 16 25 H 0.03 0.62 7.96 -51.93 -0.41 0.20 16 26 H 0.08 1.04 7.62 -51.93 -0.40 0.64 16 27 H 0.04 0.54 8.02 -51.93 -0.42 0.12 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.85 7.30 -51.93 -0.38 0.47 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 LS Contribution 282.37 15.07 4.26 4.26 Total: -1.00 -29.60 282.37 -9.28 -38.88 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.44 Total: -3.19 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.04 Total: -5.74 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -1.03 Total: -51.21 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.60 -9.28 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115818047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.769 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds