Wall clock time and date at job start Mon Mar 30 2020 03:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99992 * 2 1 4 4 H 1.48497 * 109.47584 * 274.06617 * 3 2 1 5 5 H 1.48499 * 109.47074 * 34.07121 * 3 2 1 6 6 H 1.48502 * 109.47138 * 154.06676 * 3 2 1 7 7 C 1.38806 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00523 * 197.50442 * 7 2 1 9 9 N 1.36936 * 120.00041 * 17.50091 * 7 2 1 10 10 C 1.46929 * 120.63043 * 207.96334 * 9 7 2 11 11 C 1.53195 * 108.77523 * 233.63223 * 10 9 7 12 12 C 1.53044 * 109.31094 * 305.36646 * 11 10 9 13 13 N 1.46904 * 109.45907 * 181.38900 * 12 11 10 14 14 C 1.48531 * 111.00127 * 57.60250 * 13 12 11 15 15 C 1.54936 * 103.22447 * 159.72200 * 14 13 12 16 16 C 1.54593 * 102.92311 * 322.58443 * 15 14 13 17 17 C 1.47907 * 110.99571 * 174.99886 * 13 12 11 18 18 C 1.53036 * 109.54093 * 61.36234 * 12 11 10 19 19 C 1.46924 * 120.63146 * 27.98674 * 9 7 2 20 20 H 0.97003 * 119.99965 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.58941 * 113.84748 * 10 9 7 22 22 H 1.08997 * 109.58781 * 353.41902 * 10 9 7 23 23 H 1.08995 * 109.50153 * 65.31604 * 11 10 9 24 24 H 1.09003 * 109.49794 * 185.41718 * 11 10 9 25 25 H 1.09005 * 109.45565 * 301.34294 * 12 11 10 26 26 H 1.09003 * 110.66578 * 278.15665 * 14 13 12 27 27 H 1.09000 * 110.66842 * 41.28694 * 14 13 12 28 28 H 1.08998 * 110.72096 * 204.22673 * 15 14 13 29 29 H 1.08999 * 110.72547 * 80.94411 * 15 14 13 30 30 H 1.09005 * 110.30811 * 263.04166 * 16 15 14 31 31 H 1.08998 * 110.31207 * 140.87571 * 16 15 14 32 32 H 1.08994 * 109.91844 * 333.50388 * 17 13 12 33 33 H 1.09000 * 109.91643 * 94.60194 * 17 13 12 34 34 H 1.08997 * 109.50008 * 178.68298 * 18 12 11 35 35 H 1.09003 * 109.52265 * 58.60569 * 18 12 11 36 36 H 1.08997 * 109.58393 * 246.15530 * 19 9 7 37 37 H 1.09001 * 109.58167 * 6.58124 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4118 2.0962 -1.3965 5 1 1.4933 2.6263 0.7844 6 1 3.5881 1.4169 0.6123 7 6 2.0102 -1.2021 -0.0005 8 1 3.0527 -1.2239 0.2808 9 7 1.3731 -2.3604 -0.3577 10 6 1.8151 -3.6543 0.1801 11 6 2.0772 -4.6102 -0.9881 12 6 0.8273 -4.6889 -1.8677 13 7 1.0635 -5.6303 -2.9705 14 6 1.4254 -6.9751 -2.4541 15 6 1.1178 -7.9091 -3.6514 16 6 -0.1613 -7.2862 -4.2562 17 6 -0.1630 -5.8236 -3.7742 18 6 0.5145 -3.3036 -2.4380 19 6 0.2349 -2.3330 -1.2863 20 1 -0.4850 0.8401 0.0004 21 1 1.0380 -4.0676 0.8230 22 1 2.7321 -3.5178 0.7532 23 1 2.9153 -4.2412 -1.5791 24 1 2.3128 -5.6016 -0.6011 25 1 -0.0162 -5.0345 -1.2700 26 1 2.4837 -7.0161 -2.1961 27 1 0.8084 -7.2359 -1.5943 28 1 0.9266 -8.9258 -3.3082 29 1 1.9339 -7.8918 -4.3738 30 1 -1.0457 -7.8066 -3.8886 31 1 -0.1232 -7.3258 -5.3448 32 1 -1.0432 -5.6363 -3.1593 33 1 -0.1570 -5.1477 -4.6293 34 1 -0.3619 -3.3651 -3.0830 35 1 1.3671 -2.9466 -3.0158 36 1 -0.6711 -2.6384 -0.7629 37 1 0.1093 -1.3246 -1.6806 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115818047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:14 Heat of formation + Delta-G solvation = 0.275100 kcal Electronic energy + Delta-G solvation = -16177.237580 eV Core-core repulsion = 13760.710443 eV Total energy + Delta-G solvation = -2416.527137 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47444 -38.25971 -35.01167 -32.90693 -31.79764 -30.13127 -29.60667 -26.63836 -23.96295 -23.78565 -21.87041 -21.31134 -20.69607 -18.76081 -17.20783 -16.76186 -16.59673 -15.64120 -15.35183 -15.01010 -14.92344 -14.56080 -14.25068 -13.82439 -13.36712 -13.14821 -13.07108 -12.68379 -12.60045 -12.42398 -12.16680 -12.04044 -11.97453 -11.95006 -11.71079 -11.40119 -11.20612 -11.07905 -10.55496 -9.33049 -8.71678 -7.89069 -5.34552 1.46310 1.48173 1.57371 2.50740 3.02743 3.27527 3.64819 3.76686 3.80971 3.98941 4.14513 4.17670 4.38508 4.41482 4.49700 4.65763 4.68684 4.72050 4.83441 4.91967 4.96166 5.01083 5.03223 5.04706 5.10043 5.18118 5.22870 5.36266 5.36889 5.49232 5.63001 5.71335 6.06544 6.16876 6.37890 7.12907 7.83742 8.36390 9.17985 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.057933 B = 0.006465 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.199204 B = 4330.118463 C = 4542.762693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.611 5.611 10 C 0.142 3.858 11 C -0.110 4.110 12 C 0.097 3.903 13 N -0.526 5.526 14 C 0.029 3.971 15 C -0.116 4.116 16 C -0.125 4.125 17 C 0.030 3.970 18 C -0.114 4.114 19 C 0.180 3.820 20 H 0.250 0.750 21 H 0.012 0.988 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.025 0.975 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.050 0.950 36 H -0.006 1.006 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 -14.795 -7.079 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.335 5.335 10 C 0.016 3.984 11 C -0.149 4.149 12 C -0.012 4.012 13 N -0.251 5.251 14 C -0.098 4.098 15 C -0.154 4.154 16 C -0.163 4.163 17 C -0.098 4.098 18 C -0.153 4.153 19 C 0.054 3.946 20 H 0.059 0.941 21 H 0.030 0.970 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.043 0.957 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.012 0.988 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.456 -14.443 -7.367 16.279 hybrid contribution -0.642 1.020 0.766 1.428 sum 0.813 -13.423 -6.600 14.980 Atomic orbital electron populations 1.70197 1.06768 1.25903 1.55427 1.25819 0.96053 1.01603 1.01150 0.85229 0.78260 0.79411 0.77424 1.21284 1.22008 1.19118 1.19552 0.93068 0.86153 1.40657 0.91523 1.44338 1.36436 1.02369 1.50328 1.21055 0.97339 0.85917 0.94083 1.21914 0.97045 0.99260 0.96674 1.21532 0.96344 0.92385 0.90934 1.64817 1.31554 1.08468 1.20214 1.23306 1.01309 0.88082 0.97106 1.22473 0.97702 0.98558 0.96669 1.22394 0.98676 0.93495 1.01740 1.22899 0.90983 0.98261 0.97618 1.21984 1.00330 0.94950 0.98054 1.20550 0.87790 0.97539 0.88730 0.94060 0.97001 0.92344 0.92514 0.90358 0.95744 0.89852 0.94114 0.89298 0.90586 0.90682 0.89945 0.94818 0.90979 0.92216 0.93126 0.98839 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.89 11.22 21.65 0.24 -56.64 16 2 C -0.05 -2.93 4.90 84.86 0.42 -2.51 16 3 Si 0.97 45.84 29.59 68.60 2.03 47.87 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.26 -15.04 9.58 84.03 0.80 -14.23 16 8 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 9 N -0.61 -32.15 2.99 -699.11 -2.09 -34.25 16 10 C 0.14 6.15 6.52 86.36 0.56 6.71 16 11 C -0.11 -3.92 5.19 30.67 0.16 -3.76 16 12 C 0.10 3.43 1.61 44.94 0.07 3.50 16 13 N -0.53 -15.59 5.11 -857.68 -4.38 -19.97 16 14 C 0.03 0.69 5.31 86.65 0.46 1.15 16 15 C -0.12 -2.09 7.06 31.80 0.22 -1.87 16 16 C -0.13 -2.35 6.93 31.47 0.22 -2.13 16 17 C 0.03 0.78 5.52 86.45 0.48 1.26 16 18 C -0.11 -4.66 5.36 30.67 0.16 -4.49 16 19 C 0.18 9.17 5.31 86.36 0.46 9.63 16 20 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 21 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 22 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 23 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.08 2.33 6.81 -2.39 -0.02 2.31 16 25 H 0.02 0.92 7.96 -2.38 -0.02 0.90 16 26 H 0.08 1.91 7.62 -2.39 -0.02 1.89 16 27 H 0.04 0.97 8.02 -2.39 -0.02 0.95 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 0.92 7.65 -2.39 -0.02 0.90 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.24 7.30 -2.39 -0.02 2.22 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 36 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.05 3.13 6.06 -2.39 -0.01 3.12 16 Total: -1.00 -63.99 282.37 0.83 -63.16 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.01 Total: 6.57 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 4.02 Total: -6.74 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -6.23 Total: -110.87 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -63.99 0.83 -63.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115818047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.438 kcal (2) G-P(sol) polarization free energy of solvation -63.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds