Wall clock time and date at job start Mon Mar 30 2020 03:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00395 * 2 1 4 4 H 1.48496 * 109.47309 * 239.99969 * 3 2 1 5 5 H 1.48503 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47047 * 119.99901 * 3 2 1 7 7 C 1.38813 * 119.99540 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99942 * 163.07212 * 7 2 1 9 9 N 1.36939 * 120.00111 * 343.07277 * 7 2 1 10 10 C 1.46928 * 120.62746 * 331.83734 * 9 7 2 11 11 C 1.53197 * 108.77356 * 233.62942 * 10 9 7 12 12 C 1.53041 * 109.31031 * 305.36525 * 11 10 9 13 13 N 1.46898 * 109.45707 * 181.38433 * 12 11 10 14 14 C 1.46906 * 110.99882 * 154.97533 * 13 12 11 15 15 C 1.53783 * 113.61130 * 254.13443 * 14 13 12 16 16 C 1.53959 * 87.02192 * 220.04652 * 15 14 13 17 17 C 1.53784 * 87.10719 * 25.36555 * 16 15 14 18 18 C 1.53048 * 109.52868 * 61.37404 * 12 11 10 19 19 C 1.46921 * 120.63165 * 151.85818 * 9 7 2 20 20 H 0.97009 * 119.99368 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.58708 * 113.84624 * 10 9 7 22 22 H 1.08995 * 109.70500 * 353.48677 * 10 9 7 23 23 H 1.09001 * 109.49608 * 185.41821 * 11 10 9 24 24 H 1.08993 * 109.52350 * 65.33145 * 11 10 9 25 25 H 1.09000 * 109.46709 * 301.35458 * 12 11 10 26 26 H 1.00898 * 111.00600 * 31.02048 * 13 12 11 27 27 H 1.08996 * 112.84982 * 25.33281 * 14 13 12 28 28 H 1.08997 * 113.61939 * 334.57065 * 15 14 13 29 29 H 1.09004 * 113.61082 * 105.47602 * 15 14 13 30 30 H 1.08999 * 113.54263 * 270.81772 * 16 15 14 31 31 H 1.08997 * 113.66704 * 139.93035 * 16 15 14 32 32 H 1.09003 * 113.61525 * 220.09219 * 17 16 15 33 33 H 1.09003 * 113.69520 * 89.19685 * 17 16 15 34 34 H 1.08997 * 109.49409 * 58.57780 * 18 12 11 35 35 H 1.08999 * 109.49490 * 178.67359 * 18 12 11 36 36 H 1.09000 * 109.58789 * 246.15564 * 19 9 7 37 37 H 1.08997 * 109.58736 * 6.43939 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3699 -2.3626 0.3442 10 6 0.2261 -2.3409 1.2661 11 6 0.4980 -3.3202 2.4123 12 6 0.8129 -4.7016 1.8337 13 7 1.0416 -5.6512 2.9310 14 6 0.7612 -7.0281 2.5026 15 6 -0.5540 -7.5925 3.0653 16 6 0.1951 -8.9230 3.2630 17 6 1.4880 -8.0938 3.3398 18 6 2.0683 -4.6173 0.9624 19 6 1.8140 -3.6529 -0.2003 20 1 -0.4850 0.8402 -0.0004 21 1 -0.6771 -2.6417 0.7350 22 1 0.0964 -1.3358 1.6673 23 1 -0.3825 -3.3856 3.0515 24 1 1.3474 -2.9688 2.9979 25 1 -0.0272 -5.0419 1.2283 26 1 0.4933 -5.4060 3.7417 27 1 0.8715 -7.1676 1.4272 28 1 -0.8661 -7.1243 3.9988 29 1 -1.3560 -7.6473 2.3292 30 1 0.1496 -9.5813 2.3955 31 1 -0.0537 -9.4309 4.1947 32 1 2.3322 -8.5526 2.8250 33 1 1.7366 -7.7623 4.3480 34 1 2.9030 -4.2533 1.5614 35 1 2.3056 -5.6060 0.5697 36 1 1.0404 -4.0606 -0.8510 37 1 2.7332 -3.5125 -0.7690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134682740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:09 Heat of formation + Delta-G solvation = 15.450860 kcal Electronic energy + Delta-G solvation = -15888.269223 eV Core-core repulsion = 13472.400157 eV Total energy + Delta-G solvation = -2415.869067 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.26424 -38.81985 -35.69606 -33.44754 -31.62982 -30.57054 -26.78371 -26.43232 -24.84352 -23.78399 -22.82537 -20.84925 -20.26295 -18.68723 -17.03577 -16.66956 -16.48961 -15.70430 -15.61292 -15.32661 -14.79496 -14.37586 -14.07157 -13.53260 -13.35526 -13.22604 -13.10892 -12.99344 -12.57567 -12.49979 -12.21433 -12.04163 -11.87335 -11.72016 -11.46361 -11.27232 -11.16572 -10.95158 -10.53163 -9.22180 -8.69223 -7.88084 -5.33551 1.46916 1.49735 1.56573 2.51650 3.18702 3.31521 3.68751 3.75669 3.83445 3.99470 4.04354 4.11989 4.21548 4.47658 4.53365 4.63606 4.69894 4.85391 4.87447 4.90710 4.96973 5.03420 5.07933 5.09497 5.17353 5.24802 5.31853 5.39637 5.51648 5.53082 5.64113 5.73368 6.25579 6.39007 6.56899 7.14432 7.85472 8.37808 9.18545 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.066978 B = 0.005727 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.946297 B = 4888.058590 C = 5019.066651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.065 0.935 9 N -0.610 5.610 10 C 0.180 3.820 11 C -0.127 4.127 12 C 0.107 3.893 13 N -0.677 5.677 14 C 0.057 3.943 15 C -0.169 4.169 16 C -0.131 4.131 17 C -0.126 4.126 18 C -0.103 4.103 19 C 0.141 3.859 20 H 0.250 0.750 21 H -0.006 1.006 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.029 0.971 26 H 0.344 0.656 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.011 0.989 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -14.995 6.837 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.083 0.917 9 N -0.334 5.334 10 C 0.053 3.947 11 C -0.166 4.166 12 C -0.002 4.002 13 N -0.308 5.308 14 C -0.053 4.053 15 C -0.208 4.208 16 C -0.169 4.169 17 C -0.164 4.164 18 C -0.143 4.143 19 C 0.015 3.985 20 H 0.059 0.941 21 H 0.013 0.987 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.164 0.836 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.029 0.971 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.948 -14.897 6.703 16.363 hybrid contribution -0.831 1.198 -0.321 1.493 sum 0.117 -13.700 6.382 15.114 Atomic orbital electron populations 1.70185 1.06704 1.25959 1.55357 1.25808 0.96060 1.01522 1.01097 0.85324 0.77588 0.79077 0.78369 1.20035 1.21839 1.20446 1.19501 0.92856 0.86141 1.41177 0.91732 1.44305 1.35969 1.02365 1.50755 1.20541 0.87708 0.97556 0.88862 1.22162 1.00633 0.95458 0.98366 1.21209 0.95822 0.91203 0.91990 1.60498 1.61576 1.01471 1.07235 1.23201 0.95595 0.87567 0.98956 1.23680 0.97341 0.98483 1.01327 1.22713 0.95872 0.95640 1.02700 1.23010 0.97225 0.95605 1.00558 1.21822 0.97479 0.98419 0.96560 1.21067 0.97153 0.86096 0.94208 0.94057 0.98744 0.92679 0.91502 0.92778 0.95259 0.83620 0.89557 0.89721 0.92015 0.89620 0.90309 0.91400 0.89944 0.92921 0.91278 0.97093 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.36 11.19 21.65 0.24 -56.11 16 2 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 3 Si 0.97 45.59 29.59 68.60 2.03 47.62 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.27 -15.14 9.58 84.03 0.81 -14.34 16 8 H 0.06 3.58 7.88 -2.91 -0.02 3.55 16 9 N -0.61 -31.87 2.99 -699.10 -2.09 -33.96 16 10 C 0.18 8.94 5.30 86.36 0.46 9.40 16 11 C -0.13 -4.90 5.36 30.67 0.16 -4.73 16 12 C 0.11 3.63 2.32 44.95 0.10 3.74 16 13 N -0.68 -18.64 6.42 -466.61 -3.00 -21.64 16 14 C 0.06 1.32 3.85 45.44 0.17 1.49 16 15 C -0.17 -3.27 7.72 31.18 0.24 -3.03 16 16 C -0.13 -2.12 8.09 31.18 0.25 -1.87 16 17 C -0.13 -2.41 7.88 31.12 0.25 -2.16 16 18 C -0.10 -3.72 5.58 30.67 0.17 -3.55 16 19 C 0.14 6.12 6.52 86.36 0.56 6.68 16 20 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 21 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 22 H 0.05 3.09 6.06 -2.39 -0.01 3.07 16 23 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16 24 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.03 1.04 7.85 -2.39 -0.02 1.02 16 26 H 0.34 8.72 7.81 -89.70 -0.70 8.02 16 27 H 0.09 2.13 7.47 -2.39 -0.02 2.12 16 28 H 0.08 1.56 7.83 -2.39 -0.02 1.55 16 29 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 2.17 7.69 -2.39 -0.02 2.15 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.05 2.31 7.93 -2.39 -0.02 2.29 16 Total: -1.00 -62.32 288.84 1.11 -61.21 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.33 Total: 13.65 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 3.60 Total: -10.77 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -4.85 Total: -111.71 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -62.32 1.11 -61.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134682740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.662 kcal (2) G-P(sol) polarization free energy of solvation -62.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds