Wall clock time and date at job start Mon Mar 30 2020 03:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99808 * 2 1 4 4 H 1.48497 * 109.47129 * 270.00415 * 3 2 1 5 5 H 1.48502 * 109.46899 * 30.00117 * 3 2 1 6 6 H 1.48496 * 109.47113 * 150.00101 * 3 2 1 7 7 C 1.37872 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99821 * 174.22893 * 7 2 1 9 9 C 1.50698 * 120.00372 * 354.22941 * 7 2 1 10 10 C 1.52994 * 115.54974 * 93.35689 * 9 7 2 11 11 N 1.46899 * 109.47313 * 54.89986 * 10 9 7 12 12 C 1.47443 * 111.00104 * 76.24839 * 11 10 9 13 13 C 1.54314 * 107.23468 * 123.26074 * 12 11 10 14 14 C 1.55140 * 103.02141 * 22.28252 * 13 12 11 15 15 C 1.47844 * 111.00010 * 197.09043 * 11 10 9 16 16 H 1.08998 * 110.37864 * 332.46019 * 15 11 10 17 17 C 1.52999 * 110.37499 * 94.80710 * 15 11 10 18 18 N 1.46904 * 109.47118 * 304.99999 * 17 15 11 19 19 C 1.53004 * 117.49936 * 239.03058 * 9 7 2 20 20 C 1.53005 * 117.49710 * 307.69057 * 9 7 2 21 21 H 0.96993 * 120.00251 * 5.00105 * 1 2 3 22 22 H 1.09000 * 109.47551 * 174.89811 * 10 9 7 23 23 H 1.09000 * 109.47544 * 294.89935 * 10 9 7 24 24 H 1.09008 * 109.88684 * 242.66569 * 12 11 10 25 25 H 1.08999 * 109.88869 * 3.85289 * 12 11 10 26 26 H 1.09001 * 110.70666 * 140.66857 * 13 12 11 27 27 H 1.09002 * 110.70485 * 263.72139 * 13 12 11 28 28 H 1.09001 * 110.98697 * 82.43700 * 14 13 12 29 29 H 1.08998 * 110.98737 * 206.25767 * 14 13 12 30 30 H 1.09001 * 109.47375 * 64.99474 * 17 15 11 31 31 H 1.08992 * 109.47517 * 184.99734 * 17 15 11 32 32 H 1.00896 * 111.00075 * 179.97438 * 18 17 15 33 33 H 1.00905 * 110.99561 * 303.95327 * 18 17 15 34 34 H 1.09007 * 117.49574 * 214.99911 * 19 9 7 35 35 H 1.08999 * 117.50054 * 0.02562 * 19 9 7 36 36 H 1.08997 * 117.49874 * 359.96977 * 20 9 7 37 37 H 1.08999 * 117.49757 * 144.99984 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0805 -1.1963 -0.0946 9 6 1.2569 -2.4959 0.1301 10 6 0.8794 -3.1751 -1.1878 11 7 2.0854 -3.3626 -2.0052 12 6 2.8943 -4.4884 -1.5030 13 6 3.0676 -5.4832 -2.6700 14 6 2.8304 -4.5982 -3.9219 15 6 1.7332 -3.6286 -3.4162 16 1 0.7521 -4.0992 -3.4802 17 6 1.7561 -2.3299 -4.2249 18 7 0.8744 -1.3417 -3.5893 19 6 1.6110 -3.3982 1.3139 20 6 0.2831 -2.6368 1.3018 21 1 -0.4850 0.8368 -0.0732 22 1 0.4268 -4.1448 -0.9803 23 1 0.1680 -2.5503 -1.7279 24 1 3.8694 -4.1274 -1.1756 25 1 2.3792 -4.9747 -0.6746 26 1 4.0756 -5.8979 -2.6765 27 1 2.3253 -6.2793 -2.6111 28 1 3.7358 -4.0557 -4.1937 29 1 2.4684 -5.1951 -4.7590 30 1 2.7737 -1.9406 -4.2582 31 1 1.4093 -2.5273 -5.2391 32 1 0.8726 -0.4743 -4.1048 33 1 -0.0617 -1.7045 -3.4881 34 1 1.5750 -4.4759 1.1537 35 1 2.3845 -3.0501 1.9985 36 1 0.1837 -1.7880 1.9784 37 1 -0.6264 -3.2135 1.1337 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168916442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:39 Heat of formation + Delta-G solvation = 37.787590 kcal Electronic energy + Delta-G solvation = -16573.879004 eV Core-core repulsion = 14158.978531 eV Total energy + Delta-G solvation = -2414.900473 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.74929 -36.01425 -33.59192 -31.55552 -30.82786 -28.45615 -25.57912 -24.58944 -23.01162 -21.04486 -20.51301 -19.42917 -18.71119 -15.92387 -15.66683 -15.09432 -14.31488 -14.08601 -13.86227 -13.61385 -13.36631 -12.96394 -12.32104 -12.18756 -11.74790 -11.33096 -10.89756 -10.81743 -10.71465 -10.67494 -10.54044 -10.45369 -10.28205 -10.01032 -9.87494 -9.16327 -8.57021 -8.05439 -7.79483 -7.68895 -7.17289 -5.65599 -3.63261 3.51221 3.56008 3.60469 4.65087 4.73099 4.96815 5.05075 5.35493 5.45798 5.58931 5.64306 5.71624 5.82444 5.91676 5.94235 6.07694 6.15015 6.22308 6.35061 6.39323 6.50487 6.64391 6.69717 6.75883 6.84867 6.94399 7.15342 7.32851 7.71735 7.79507 7.86763 8.12199 8.17065 8.25491 8.29270 8.85638 9.30880 9.96873 11.43915 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025131 B = 0.011403 C = 0.009298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.891805 B = 2454.901136 C = 3010.695194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.078 3.922 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.445 4.445 8 H 0.053 0.947 9 C 0.063 3.937 10 C 0.106 3.894 11 N -0.479 5.479 12 C 0.045 3.955 13 C -0.143 4.143 14 C -0.122 4.122 15 C 0.072 3.928 16 H 0.037 0.963 17 C 0.087 3.913 18 N -0.813 5.813 19 C -0.224 4.224 20 C -0.154 4.154 21 H 0.251 0.749 22 H -0.012 1.012 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.006 0.994 32 H 0.329 0.671 33 H 0.332 0.668 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -7.734 -7.457 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.122 4.122 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.483 4.483 8 H 0.071 0.929 9 C 0.062 3.938 10 C -0.022 4.022 11 N -0.202 5.202 12 C -0.083 4.083 13 C -0.182 4.182 14 C -0.161 4.161 15 C -0.037 4.037 16 H 0.055 0.945 17 C -0.045 4.045 18 N -0.342 5.342 19 C -0.262 4.262 20 C -0.192 4.192 21 H 0.061 0.939 22 H 0.006 0.994 23 H 0.102 0.898 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.725 -7.189 -6.722 10.213 hybrid contribution -0.640 0.115 -0.957 1.157 sum 2.084 -7.075 -7.680 10.648 Atomic orbital electron populations 1.69984 1.05579 1.25512 1.51468 1.24740 0.94503 0.97907 0.95091 0.86778 0.79749 0.84673 0.77673 1.21013 1.22126 1.20566 1.20070 0.92342 0.87982 1.47924 0.92865 1.18777 0.96793 0.93854 0.84359 1.21891 0.89916 0.94708 0.95652 1.63219 1.20183 1.37722 0.99125 1.22857 0.99485 0.90270 0.95676 1.22819 1.01142 0.98106 0.96123 1.22683 0.99304 0.97124 0.96982 1.22560 0.96041 0.93855 0.91288 0.94469 1.21661 0.98291 0.92345 0.92166 1.58417 1.13737 1.05439 1.56600 1.23116 1.00078 0.95307 1.07653 1.22437 0.90525 1.00518 1.05678 0.93942 0.99442 0.89760 0.91316 0.93190 0.91568 0.92373 0.90793 0.91946 0.91118 0.97560 0.85845 0.85543 0.92663 0.90894 0.89812 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 12.42 55.43 0.69 -24.49 16 2 C 0.08 2.18 5.36 -17.82 -0.10 2.08 16 3 Si 0.88 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.45 -12.34 8.57 -34.44 -0.30 -12.63 16 8 H 0.05 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.06 1.57 1.51 -155.66 -0.24 1.34 16 10 C 0.11 2.39 4.29 -3.83 -0.02 2.37 16 11 N -0.48 -9.62 4.32 -223.39 -0.97 -10.59 16 12 C 0.05 0.81 6.39 -2.84 -0.02 0.79 16 13 C -0.14 -2.02 6.94 -24.91 -0.17 -2.19 16 14 C -0.12 -1.69 6.50 -24.59 -0.16 -1.85 16 15 C 0.07 1.20 2.71 -66.19 -0.18 1.02 16 16 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 17 C 0.09 1.42 6.57 -3.82 -0.03 1.39 16 18 N -0.81 -14.89 8.27 -10.37 -0.09 -14.98 16 19 C -0.22 -5.13 9.23 -26.69 -0.25 -5.38 16 20 C -0.15 -3.77 8.99 -26.69 -0.24 -4.01 16 21 H 0.25 6.96 8.32 -40.82 -0.34 6.62 16 22 H -0.01 -0.27 7.71 -51.93 -0.40 -0.67 16 23 H 0.08 2.02 5.81 -51.93 -0.30 1.72 16 24 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 25 H 0.05 0.93 5.80 -51.93 -0.30 0.63 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.01 7.97 -51.93 -0.41 0.60 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.21 8.03 -51.93 -0.42 0.80 16 31 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.33 5.51 9.08 -39.29 -0.36 5.15 16 33 H 0.33 5.92 7.91 -39.29 -0.31 5.61 16 34 H 0.05 1.16 7.13 -51.93 -0.37 0.79 16 35 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.08 2.22 8.00 -51.93 -0.42 1.81 16 37 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 291.31 15.07 4.39 4.39 Total: -1.00 -29.04 291.31 -8.88 -37.92 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.20 Total: 7.69 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -1.68 Total: -17.08 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.36 Total: -50.06 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.04 -8.88 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168916442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.708 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds