Wall clock time and date at job start Mon Mar 30 2020 03:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99808 * 2 1 4 4 H 1.48497 * 109.47129 * 270.00415 * 3 2 1 5 5 H 1.48502 * 109.46899 * 30.00117 * 3 2 1 6 6 H 1.48496 * 109.47113 * 150.00101 * 3 2 1 7 7 C 1.37872 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99821 * 174.22893 * 7 2 1 9 9 C 1.50698 * 120.00372 * 354.22941 * 7 2 1 10 10 C 1.52994 * 115.54974 * 93.35689 * 9 7 2 11 11 N 1.46899 * 109.47313 * 54.89986 * 10 9 7 12 12 C 1.47443 * 111.00104 * 76.24839 * 11 10 9 13 13 C 1.54314 * 107.23468 * 123.26074 * 12 11 10 14 14 C 1.55140 * 103.02141 * 22.28252 * 13 12 11 15 15 C 1.47844 * 111.00010 * 197.09043 * 11 10 9 16 16 H 1.08998 * 110.37864 * 332.46019 * 15 11 10 17 17 C 1.52999 * 110.37499 * 94.80710 * 15 11 10 18 18 N 1.46904 * 109.47118 * 304.99999 * 17 15 11 19 19 C 1.53004 * 117.49936 * 239.03058 * 9 7 2 20 20 C 1.53005 * 117.49710 * 307.69057 * 9 7 2 21 21 H 0.96993 * 120.00251 * 5.00105 * 1 2 3 22 22 H 1.09000 * 109.47551 * 174.89811 * 10 9 7 23 23 H 1.09000 * 109.47544 * 294.89935 * 10 9 7 24 24 H 1.09008 * 109.88684 * 242.66569 * 12 11 10 25 25 H 1.08999 * 109.88869 * 3.85289 * 12 11 10 26 26 H 1.09001 * 110.70666 * 140.66857 * 13 12 11 27 27 H 1.09002 * 110.70485 * 263.72139 * 13 12 11 28 28 H 1.09001 * 110.98697 * 82.43700 * 14 13 12 29 29 H 1.08998 * 110.98737 * 206.25767 * 14 13 12 30 30 H 1.09001 * 109.47375 * 64.99474 * 17 15 11 31 31 H 1.08992 * 109.47517 * 184.99734 * 17 15 11 32 32 H 1.00896 * 111.00075 * 179.97438 * 18 17 15 33 33 H 1.00905 * 110.99561 * 303.95327 * 18 17 15 34 34 H 1.09007 * 117.49574 * 214.99911 * 19 9 7 35 35 H 1.08999 * 117.50054 * 0.02562 * 19 9 7 36 36 H 1.08997 * 117.49874 * 359.96977 * 20 9 7 37 37 H 1.08999 * 117.49757 * 144.99984 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0805 -1.1963 -0.0946 9 6 1.2569 -2.4959 0.1301 10 6 0.8794 -3.1751 -1.1878 11 7 2.0854 -3.3626 -2.0052 12 6 2.8943 -4.4884 -1.5030 13 6 3.0676 -5.4832 -2.6700 14 6 2.8304 -4.5982 -3.9219 15 6 1.7332 -3.6286 -3.4162 16 1 0.7521 -4.0992 -3.4802 17 6 1.7561 -2.3299 -4.2249 18 7 0.8744 -1.3417 -3.5893 19 6 1.6110 -3.3982 1.3139 20 6 0.2831 -2.6368 1.3018 21 1 -0.4850 0.8368 -0.0732 22 1 0.4268 -4.1448 -0.9803 23 1 0.1680 -2.5503 -1.7279 24 1 3.8694 -4.1274 -1.1756 25 1 2.3792 -4.9747 -0.6746 26 1 4.0756 -5.8979 -2.6765 27 1 2.3253 -6.2793 -2.6111 28 1 3.7358 -4.0557 -4.1937 29 1 2.4684 -5.1951 -4.7590 30 1 2.7737 -1.9406 -4.2582 31 1 1.4093 -2.5273 -5.2391 32 1 0.8726 -0.4743 -4.1048 33 1 -0.0617 -1.7045 -3.4881 34 1 1.5750 -4.4759 1.1537 35 1 2.3845 -3.0501 1.9985 36 1 0.1837 -1.7880 1.9784 37 1 -0.6264 -3.2135 1.1337 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168916442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:39 Heat of formation + Delta-G solvation = 18.531996 kcal Electronic energy + Delta-G solvation = -16574.713989 eV Core-core repulsion = 14158.978531 eV Total energy + Delta-G solvation = -2415.735458 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18262 -37.83493 -34.94118 -33.66770 -32.28941 -29.77356 -27.52635 -26.33508 -24.42687 -22.84895 -21.87962 -20.79007 -20.64663 -17.79769 -17.00687 -16.66932 -16.38819 -15.61482 -15.35693 -15.19235 -14.73851 -14.63698 -13.85553 -13.71214 -13.44663 -12.81036 -12.78133 -12.69786 -12.41780 -12.26774 -12.13834 -11.85070 -11.81573 -11.68409 -11.40150 -11.08123 -10.60452 -10.13063 -9.73529 -9.06389 -8.68062 -7.80406 -5.81936 1.48440 1.50265 1.57197 2.62345 3.25415 3.47764 3.69182 3.75587 3.90172 4.17323 4.21232 4.33469 4.50148 4.53077 4.61770 4.70771 4.78738 4.84994 4.90979 4.98554 5.00485 5.04216 5.13016 5.15349 5.30898 5.35507 5.40604 5.47963 5.75436 5.96535 6.06417 6.46756 6.58428 6.73974 6.82277 6.83395 7.13978 7.79502 9.27685 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025131 B = 0.011403 C = 0.009298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.891805 B = 2454.901136 C = 3010.695194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.043 3.957 3 Si 0.930 3.070 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.452 4.452 8 H 0.033 0.967 9 C 0.043 3.957 10 C 0.122 3.878 11 N -0.502 5.502 12 C 0.041 3.959 13 C -0.133 4.133 14 C -0.113 4.113 15 C 0.067 3.933 16 H 0.037 0.963 17 C 0.090 3.910 18 N -0.837 5.837 19 C -0.202 4.202 20 C -0.160 4.160 21 H 0.249 0.751 22 H -0.009 1.009 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.334 0.666 33 H 0.331 0.669 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.727 -8.996 -8.671 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.155 4.155 3 Si 0.759 3.241 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.490 4.490 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.006 4.006 11 N -0.225 5.225 12 C -0.087 4.087 13 C -0.171 4.171 14 C -0.151 4.151 15 C -0.042 4.042 16 H 0.055 0.945 17 C -0.041 4.041 18 N -0.367 5.367 19 C -0.239 4.239 20 C -0.198 4.198 21 H 0.058 0.942 22 H 0.009 0.991 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.357 -8.457 -7.944 12.079 hybrid contribution -0.808 0.509 -0.559 1.107 sum 2.549 -7.948 -8.503 11.915 Atomic orbital electron populations 1.70069 1.06312 1.25805 1.52153 1.25196 0.95134 1.00066 0.95153 0.86010 0.78631 0.81923 0.77499 1.20826 1.21988 1.20747 1.20131 0.91492 0.89610 1.47792 0.94893 1.18903 0.97059 0.93813 0.85952 1.21549 0.90587 0.94053 0.94445 1.63086 1.19302 1.39513 1.00616 1.22844 0.98162 0.90599 0.97101 1.22760 1.02818 0.97329 0.94191 1.22667 0.98280 0.96512 0.97657 1.22691 0.97179 0.94824 0.89526 0.94483 1.21663 0.97297 0.91676 0.93468 1.58420 1.14085 1.06443 1.57735 1.23056 0.98572 0.96327 1.05974 1.22323 0.91705 1.00324 1.05440 0.94161 0.99091 0.91640 0.92698 0.94099 0.89460 0.91238 0.90629 0.89053 0.92274 0.94587 0.85300 0.85583 0.90233 0.91447 0.92414 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.79 12.42 21.45 0.27 -51.52 16 2 C 0.04 2.42 5.36 84.65 0.45 2.88 16 3 Si 0.93 45.80 29.54 68.60 2.03 47.83 16 4 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.45 -25.29 8.57 25.60 0.22 -25.07 16 8 H 0.03 1.94 7.82 -2.91 -0.02 1.92 16 9 C 0.04 2.17 1.51 -52.93 -0.08 2.09 16 10 C 0.12 5.43 4.29 86.30 0.37 5.80 16 11 N -0.50 -19.65 4.32 -860.66 -3.72 -23.37 16 12 C 0.04 1.40 6.39 86.64 0.55 1.95 16 13 C -0.13 -3.30 6.94 31.77 0.22 -3.07 16 14 C -0.11 -2.73 6.50 31.98 0.21 -2.52 16 15 C 0.07 2.10 2.71 45.39 0.12 2.22 16 16 H 0.04 1.18 7.81 -2.39 -0.02 1.16 16 17 C 0.09 2.79 6.57 86.30 0.57 3.36 16 18 N -0.84 -30.32 8.27 -186.72 -1.54 -31.87 16 19 C -0.20 -9.11 9.23 30.62 0.28 -8.82 16 20 C -0.16 -7.87 8.99 30.62 0.28 -7.59 16 21 H 0.25 13.92 8.32 -92.71 -0.77 13.15 16 22 H -0.01 -0.38 7.71 -2.39 -0.02 -0.40 16 23 H 0.07 3.15 5.81 -2.39 -0.01 3.13 16 24 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.04 1.45 5.80 -2.39 -0.01 1.43 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.82 7.97 -2.39 -0.02 1.80 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.95 8.03 -2.39 -0.02 1.93 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.33 11.09 9.08 -89.70 -0.81 10.28 16 33 H 0.33 11.81 7.91 -89.69 -0.71 11.10 16 34 H 0.08 3.19 7.13 -2.38 -0.02 3.17 16 35 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.06 3.11 8.00 -2.39 -0.02 3.09 16 37 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -61.40 291.31 -0.25 -61.65 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.47 Total: 26.05 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 3.19 Total: -28.78 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -5.00 Total: -106.75 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -61.40 -0.25 -61.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168916442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.181 kcal (2) G-P(sol) polarization free energy of solvation -61.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds