Wall clock time and date at job start Mon Mar 30 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48494 * 109.46962 * 270.00018 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99607 * 3 2 1 6 6 H 1.48493 * 109.47258 * 149.99425 * 3 2 1 7 7 C 1.37878 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00493 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99730 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.50751 * 299.95026 * 9 7 2 11 11 C 1.53043 * 109.48854 * 179.89538 * 9 7 2 12 12 N 1.46962 * 109.36475 * 181.63320 * 11 9 7 13 13 C 1.46896 * 110.99838 * 183.18685 * 12 11 9 14 14 C 1.54268 * 110.03161 * 174.33341 * 13 12 11 15 15 C 1.54888 * 104.19796 * 217.10603 * 14 13 12 16 16 C 1.54892 * 102.74968 * 37.93934 * 15 14 13 17 17 C 1.53875 * 110.03664 * 57.16800 * 13 12 11 18 18 C 1.46958 * 110.87781 * 59.32079 * 12 11 9 19 19 C 1.53051 * 109.36483 * 300.67660 * 18 12 11 20 20 N 1.46960 * 109.48560 * 60.00152 * 9 7 2 21 21 H 0.97004 * 119.99797 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.49305 * 61.66705 * 11 9 7 23 23 H 1.09005 * 109.48964 * 301.59875 * 11 9 7 24 24 H 1.08999 * 110.02184 * 295.77141 * 13 12 11 25 25 H 1.09000 * 110.48418 * 335.78374 * 14 13 12 26 26 H 1.09001 * 110.48850 * 98.42528 * 14 13 12 27 27 H 1.08996 * 110.75886 * 279.62900 * 15 14 13 28 28 H 1.09000 * 110.91806 * 156.32609 * 15 14 13 29 29 H 1.09003 * 110.48757 * 203.37982 * 16 15 14 30 30 H 1.09009 * 110.59655 * 80.79299 * 16 15 14 31 31 H 1.08996 * 110.03514 * 238.57063 * 17 13 12 32 32 H 1.09008 * 110.02860 * 359.97438 * 17 13 12 33 33 H 1.08999 * 109.48429 * 180.71333 * 18 12 11 34 34 H 1.08995 * 109.50922 * 60.66139 * 18 12 11 35 35 H 1.08997 * 109.48870 * 298.43955 * 19 18 12 36 36 H 1.08993 * 109.48697 * 178.36922 * 19 18 12 37 37 H 1.00902 * 110.99762 * 55.42542 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8759 -0.6814 -0.8891 11 6 4.0220 -2.6369 0.0043 12 7 5.4911 -2.6339 0.0444 13 6 6.0225 -4.0015 -0.0276 14 6 7.5615 -3.9658 -0.1270 15 6 7.9071 -5.1292 -1.0895 16 6 6.7644 -5.0605 -2.1329 17 6 5.5157 -4.6975 -1.3029 18 6 5.9809 -1.9410 1.2443 19 6 5.4703 -0.4982 1.2411 20 7 4.0013 -0.5012 1.2010 21 1 -0.4850 0.8401 -0.0004 22 1 3.6840 -3.1443 -0.8993 23 1 3.6354 -3.1576 0.8804 24 1 5.7176 -4.5671 0.8528 25 1 7.8950 -3.0150 -0.5427 26 1 8.0111 -4.1340 0.8516 27 1 7.8925 -6.0834 -0.5630 28 1 8.8744 -4.9667 -1.5648 29 1 6.6322 -6.0276 -2.6180 30 1 6.9678 -4.2875 -2.8741 31 1 4.9654 -5.6013 -1.0415 32 1 4.8750 -4.0206 -1.8683 33 1 7.0709 -1.9411 1.2447 34 1 5.6169 -2.4536 2.1346 35 1 5.8569 0.0224 0.3649 36 1 5.8084 0.0091 2.1446 37 1 3.6176 -0.9132 2.0384 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219411006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:45 Heat of formation + Delta-G solvation = -15.001351 kcal Electronic energy + Delta-G solvation = -16293.233478 eV Core-core repulsion = 13876.043904 eV Total energy + Delta-G solvation = -2417.189573 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63248 -38.23296 -35.04007 -33.89525 -32.20606 -29.64558 -28.59191 -27.21562 -25.11801 -23.26045 -21.39534 -21.17610 -20.55702 -18.88887 -17.53711 -16.67462 -16.25143 -15.74317 -15.59613 -15.37995 -14.98577 -14.57435 -14.37952 -14.21620 -14.07046 -12.95644 -12.72810 -12.64746 -12.26214 -12.21989 -12.05204 -11.92584 -11.78705 -11.70835 -11.59283 -11.44229 -11.37755 -11.10080 -10.71332 -9.29008 -8.65405 -8.24783 -6.37760 1.52002 1.57564 1.95498 2.62030 2.93472 3.11739 3.63638 3.74934 3.80441 4.05636 4.24612 4.32730 4.36554 4.39975 4.53276 4.55226 4.58199 4.71642 4.75608 4.81386 4.87236 4.98767 5.01151 5.09176 5.15134 5.19130 5.21215 5.30487 5.34294 5.50432 5.62204 6.07072 6.17737 6.31488 6.42736 6.78512 6.85793 7.40933 8.88611 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.042592 B = 0.007788 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.235203 B = 3594.298740 C = 3958.108454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.028 3.972 3 Si 0.929 3.071 4 H -0.302 1.302 5 H -0.313 1.313 6 H -0.156 1.156 7 C -0.528 4.528 8 H 0.027 0.973 9 C 0.200 3.800 10 H 0.033 0.967 11 C 0.052 3.948 12 N -0.535 5.535 13 C 0.075 3.925 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.126 4.126 18 C 0.025 3.975 19 C 0.054 3.946 20 N -0.688 5.688 21 H 0.263 0.737 22 H 0.063 0.937 23 H 0.008 0.992 24 H 0.027 0.973 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.022 0.978 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.650 -7.463 0.779 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.171 4.171 3 Si 0.754 3.246 4 H -0.230 1.230 5 H -0.241 1.241 6 H -0.077 1.077 7 C -0.567 4.567 8 H 0.045 0.955 9 C 0.092 3.908 10 H 0.051 0.949 11 C -0.078 4.078 12 N -0.260 5.260 13 C -0.033 4.033 14 C -0.147 4.147 15 C -0.153 4.153 16 C -0.154 4.154 17 C -0.164 4.164 18 C -0.105 4.105 19 C -0.076 4.076 20 N -0.318 5.318 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.026 0.974 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 18.652 -6.493 0.111 19.750 hybrid contribution -1.073 -0.752 0.784 1.527 sum 17.578 -7.245 0.895 19.034 Atomic orbital electron populations 1.70104 1.08873 1.28132 1.51919 1.25886 0.95107 1.03894 0.92167 0.86295 0.84541 0.76099 0.77680 1.23044 1.24111 1.07686 1.21125 0.90820 0.92713 1.52027 0.95510 1.19227 0.92244 0.89060 0.90300 0.94928 1.22515 0.86994 0.99180 0.99117 1.62373 1.07696 1.16649 1.39292 1.22414 0.96427 0.87777 0.96708 1.22393 0.92343 0.99808 1.00148 1.22445 0.98523 0.98089 0.96284 1.22288 0.93955 1.01493 0.97629 1.22294 0.98823 0.99236 0.96070 1.22834 1.01320 0.96305 0.90015 1.22177 0.88337 0.94416 1.02637 1.61522 1.06653 1.58022 1.05584 0.92884 0.91819 0.97392 0.95497 0.90933 0.91015 0.90874 0.89998 0.90683 0.91879 0.92073 0.92589 0.88587 0.95947 0.91418 0.88944 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 2 C 0.03 1.68 5.47 84.65 0.46 2.14 16 3 Si 0.93 45.56 26.94 68.60 1.85 47.41 16 4 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 5 H -0.31 -15.68 7.11 99.48 0.71 -14.98 16 6 H -0.16 -6.82 5.16 99.48 0.51 -6.30 16 7 C -0.53 -30.47 9.27 25.60 0.24 -30.23 16 8 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 9 C 0.20 9.31 1.95 44.17 0.09 9.40 16 10 H 0.03 1.61 7.57 -2.39 -0.02 1.59 16 11 C 0.05 2.10 4.52 86.31 0.39 2.49 16 12 N -0.54 -17.56 4.49 -866.24 -3.89 -21.45 16 13 C 0.07 2.06 2.67 45.64 0.12 2.18 16 14 C -0.11 -2.29 5.20 31.67 0.16 -2.12 16 15 C -0.12 -2.02 6.91 31.89 0.22 -1.80 16 16 C -0.12 -2.39 6.83 31.67 0.22 -2.18 16 17 C -0.13 -3.38 5.91 31.32 0.19 -3.19 16 18 C 0.02 0.71 5.41 86.31 0.47 1.18 16 19 C 0.05 1.70 6.71 86.31 0.58 2.28 16 20 N -0.69 -27.88 3.17 -495.00 -1.57 -29.45 16 21 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 22 H 0.06 2.70 6.06 -2.39 -0.01 2.68 16 23 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 24 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 1.62 7.85 -2.39 -0.02 1.60 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.78 6.18 -2.38 -0.01 1.76 16 33 H 0.10 2.26 6.94 -2.39 -0.02 2.24 16 34 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.33 13.47 8.79 -89.69 -0.79 12.68 16 Total: -1.00 -66.14 278.02 -0.14 -66.27 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.05 Total: 17.86 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 3.13 Total: -19.86 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -5.16 Total: -111.68 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.85 Total: 47.41 kcal Total: -66.14 -0.14 -66.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219411006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.273 kcal (2) G-P(sol) polarization free energy of solvation -66.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds