Wall clock time and date at job start Mon Mar 30 2020 03:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48505 * 109.47309 * 240.00061 * 3 2 1 5 5 H 1.48496 * 109.47126 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47116 * 120.00124 * 3 2 1 7 7 C 1.37877 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00421 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00126 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.49234 * 305.24126 * 9 7 2 11 11 C 1.53061 * 109.48706 * 65.28321 * 9 7 2 12 12 N 1.46959 * 109.36183 * 178.39193 * 11 9 7 13 13 C 1.46959 * 110.88179 * 300.68047 * 12 11 9 14 14 C 1.53047 * 109.36616 * 59.32059 * 13 12 11 15 15 N 1.46955 * 109.51049 * 185.18183 * 9 7 2 16 16 C 1.46905 * 110.99463 * 56.83306 * 15 9 7 17 17 C 1.54273 * 110.03184 * 187.21278 * 16 15 9 18 18 C 1.54887 * 104.19745 * 217.10894 * 17 16 15 19 19 C 1.54891 * 102.74964 * 37.94254 * 18 17 16 20 20 C 1.53881 * 110.03090 * 70.05214 * 16 15 9 21 21 H 0.96995 * 119.99787 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.48655 * 298.35542 * 11 9 7 23 23 H 1.09002 * 109.48928 * 58.42885 * 11 9 7 24 24 H 1.00902 * 110.99993 * 176.81272 * 12 11 9 25 25 H 1.08997 * 109.49304 * 179.29161 * 13 12 11 26 26 H 1.09004 * 109.48788 * 299.33005 * 13 12 11 27 27 H 1.09002 * 109.48803 * 61.56349 * 14 13 12 28 28 H 1.08997 * 109.49364 * 181.63433 * 14 13 12 29 29 H 1.08994 * 110.01873 * 308.65964 * 16 15 9 30 30 H 1.08991 * 110.48541 * 335.78934 * 17 16 15 31 31 H 1.09004 * 110.48029 * 98.43107 * 17 16 15 32 32 H 1.09002 * 110.75334 * 279.63223 * 18 17 16 33 33 H 1.08992 * 110.75949 * 156.26139 * 18 17 16 34 34 H 1.09000 * 110.48563 * 203.38141 * 19 18 17 35 35 H 1.08998 * 110.48401 * 80.73693 * 19 18 17 36 36 H 1.09001 * 110.03278 * 238.57021 * 20 16 15 37 37 H 1.09002 * 110.03198 * 359.94939 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.5555 -2.5183 0.8372 11 6 0.4738 -2.6388 -1.3128 12 7 -0.2290 -3.9294 -1.3275 13 6 0.7203 -5.0442 -1.2026 14 6 1.4976 -4.9046 0.1084 15 7 2.2004 -3.6140 0.1230 16 6 3.0199 -3.4745 1.3343 17 6 4.1252 -4.5506 1.3513 18 6 4.2400 -4.9537 2.8423 19 6 2.7665 -4.9240 3.3189 20 6 2.1560 -3.7120 2.5854 21 1 -0.4849 0.8400 0.0004 22 1 -0.2512 -1.8290 -1.3937 23 1 1.1666 -2.5925 -2.1531 24 1 -0.7918 -4.0252 -2.1594 25 1 0.1751 -5.9880 -1.2034 26 1 1.4157 -5.0255 -2.0418 27 1 0.8047 -4.9509 0.9486 28 1 2.2226 -5.7144 0.1894 29 1 3.4650 -2.4803 1.3711 30 1 3.8321 -5.4081 0.7457 31 1 5.0677 -4.1349 0.9948 32 1 4.8389 -4.2286 3.3935 33 1 4.6577 -5.9556 2.9406 34 1 2.7175 -4.7809 4.3984 35 1 2.2540 -5.8420 3.0311 36 1 2.1825 -2.8333 3.2298 37 1 1.1285 -3.9299 2.2938 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219413618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:40 Heat of formation + Delta-G solvation = -16.587119 kcal Electronic energy + Delta-G solvation = -16688.130917 eV Core-core repulsion = 14270.872579 eV Total energy + Delta-G solvation = -2417.258338 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66947 -37.84965 -35.08633 -33.98207 -31.43179 -29.57224 -28.70983 -27.13127 -25.08865 -23.61352 -21.54153 -21.03691 -19.77256 -18.32221 -17.60954 -16.61667 -16.52301 -16.10543 -15.42546 -15.26326 -14.87414 -14.50989 -14.17549 -14.06902 -13.65375 -12.86924 -12.65897 -12.51138 -12.43211 -12.31342 -12.18956 -11.91548 -11.86122 -11.81678 -11.56433 -11.30577 -10.99646 -10.81573 -10.54423 -9.28926 -8.80150 -8.13301 -6.24578 1.40343 1.41617 1.49452 2.40583 3.13675 3.33691 3.56062 3.85183 3.88225 4.10907 4.29151 4.44995 4.48838 4.62080 4.66878 4.71613 4.77676 4.81576 4.82466 4.94287 5.01676 5.07323 5.11854 5.14988 5.23121 5.33087 5.46946 5.52600 5.57815 5.67801 5.72750 6.07619 6.29646 6.43086 6.69147 6.82740 6.94058 7.44866 8.93570 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.023242 B = 0.011552 C = 0.008632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.446198 B = 2423.242948 C = 3242.909664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.232 3.768 10 H -0.031 1.031 11 C 0.084 3.916 12 N -0.703 5.703 13 C 0.062 3.938 14 C 0.052 3.948 15 N -0.537 5.537 16 C 0.084 3.916 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.150 4.150 21 H 0.262 0.738 22 H 0.065 0.935 23 H 0.001 0.999 24 H 0.340 0.660 25 H 0.096 0.904 26 H 0.028 0.972 27 H 0.022 0.978 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.377 -10.409 2.350 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.074 0.926 9 C 0.125 3.875 10 H -0.014 1.014 11 C -0.046 4.046 12 N -0.334 5.334 13 C -0.067 4.067 14 C -0.076 4.076 15 N -0.260 5.260 16 C -0.025 4.025 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.189 4.189 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.019 0.981 24 H 0.157 0.843 25 H 0.114 0.886 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.383 -10.251 2.595 11.866 hybrid contribution -0.246 1.442 -0.304 1.494 sum 5.137 -8.809 2.291 10.452 Atomic orbital electron populations 1.70056 1.07143 1.27388 1.51074 1.25711 0.95642 1.02324 0.94779 0.85639 0.78363 0.78998 0.78818 1.19624 1.20894 1.19751 1.21323 0.93036 0.91048 1.50581 0.92636 1.18892 0.88702 0.88256 0.91667 1.01351 1.21863 0.95588 0.89900 0.97237 1.60611 1.25278 1.02818 1.44710 1.22031 0.93764 0.94318 0.96635 1.22233 0.96126 0.92833 0.96395 1.62388 1.24304 1.02197 1.37152 1.22283 0.93785 0.99323 0.87124 1.22446 0.97246 0.97831 0.97407 1.22461 0.95883 1.02126 0.94681 1.22286 0.96361 0.96779 0.99556 1.22686 0.99368 0.98678 0.98168 0.92917 0.91639 0.98125 0.84288 0.88571 0.95346 0.95991 0.88942 0.92133 0.90685 0.91693 0.91390 0.89301 0.91057 0.91263 0.94098 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.94 11.73 21.45 0.25 -53.69 16 2 C 0.01 0.83 5.33 84.65 0.45 1.28 16 3 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.52 -29.30 7.62 25.60 0.20 -29.11 16 8 H 0.06 3.13 6.74 -2.91 -0.02 3.11 16 9 C 0.23 12.21 1.59 44.18 0.07 12.28 16 10 H -0.03 -1.88 7.06 -2.39 -0.02 -1.90 16 11 C 0.08 4.20 5.81 86.31 0.50 4.71 16 12 N -0.70 -28.82 6.90 -513.42 -3.54 -32.36 16 13 C 0.06 2.15 6.72 86.31 0.58 2.73 16 14 C 0.05 1.92 4.93 86.31 0.43 2.34 16 15 N -0.54 -23.45 4.51 -845.52 -3.81 -27.27 16 16 C 0.08 3.32 2.74 45.64 0.13 3.44 16 17 C -0.11 -3.32 6.32 31.67 0.20 -3.12 16 18 C -0.11 -2.74 6.91 31.89 0.22 -2.52 16 19 C -0.11 -3.04 6.83 31.67 0.22 -2.83 16 20 C -0.15 -5.62 5.42 31.32 0.17 -5.45 16 21 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 22 H 0.07 3.66 6.54 -2.39 -0.02 3.65 16 23 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 24 H 0.34 12.00 8.90 -89.69 -0.80 11.20 16 25 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.03 0.98 8.14 -2.38 -0.02 0.97 16 27 H 0.02 0.87 6.09 -2.39 -0.01 0.86 16 28 H 0.09 2.83 6.04 -2.39 -0.01 2.82 16 29 H 0.06 2.77 6.17 -2.39 -0.01 2.76 16 30 H 0.07 2.12 5.90 -2.39 -0.01 2.10 16 31 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 1.77 5.10 -2.39 -0.01 1.76 16 Total: -1.00 -62.82 274.37 -1.67 -64.49 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.26 Total: 18.72 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 3.15 Total: -16.24 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -7.11 Total: -113.32 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -62.82 -1.67 -64.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219413618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.905 kcal (2) G-P(sol) polarization free energy of solvation -62.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds