Wall clock time and date at job start Mon Mar 30 2020 03:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86811 * 119.99631 * 2 1 4 4 H 1.48506 * 109.46642 * 269.99835 * 3 2 1 5 5 H 1.48502 * 109.47012 * 29.99527 * 3 2 1 6 6 H 1.48495 * 109.47152 * 149.99773 * 3 2 1 7 7 C 1.37875 * 120.00777 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99354 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00355 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.48619 * 110.99872 * 190.37269 * 11 10 9 13 13 C 1.52420 * 105.88734 * 241.10625 * 12 11 10 14 14 H 1.08998 * 110.74855 * 88.30356 * 13 12 11 15 15 C 1.51667 * 117.03481 * 215.44580 * 13 12 11 16 16 C 1.53947 * 106.69070 * 176.17277 * 15 13 12 17 17 C 1.52544 * 111.45877 * 305.02291 * 16 15 13 18 18 N 1.47738 * 111.93305 * 52.91763 * 17 16 15 19 19 C 1.45294 * 108.46371 * 301.13243 * 18 17 16 20 20 H 1.09000 * 110.27701 * 306.30082 * 19 18 17 21 21 C 1.49056 * 111.00124 * 69.86856 * 11 10 9 22 22 H 0.96999 * 120.00276 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47328 * 60.00043 * 9 7 2 24 24 H 1.09004 * 109.47043 * 299.99853 * 9 7 2 25 25 H 1.08992 * 109.47056 * 59.99641 * 10 9 7 26 26 H 1.09004 * 109.47006 * 299.99757 * 10 9 7 27 27 H 1.08996 * 110.16904 * 0.21294 * 12 11 10 28 28 H 1.09001 * 110.16975 * 122.00593 * 12 11 10 29 29 H 1.09005 * 110.00645 * 56.88582 * 15 13 12 30 30 H 1.09000 * 110.00897 * 295.47186 * 15 13 12 31 31 H 1.08996 * 109.08126 * 184.51141 * 16 15 13 32 32 H 1.09000 * 109.07497 * 65.53157 * 16 15 13 33 33 H 1.09005 * 108.98956 * 292.28810 * 17 16 15 34 34 H 1.08996 * 108.92037 * 173.50372 * 17 16 15 35 35 H 1.00901 * 111.00427 * 63.33007 * 18 17 16 36 36 H 1.08997 * 110.62970 * 264.87488 * 21 11 10 37 37 H 1.09004 * 110.62071 * 27.73120 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 7 5.4908 -2.6362 0.0009 12 6 6.0234 -4.0010 -0.2490 13 6 6.8343 -4.3656 0.9890 14 1 6.2003 -4.8344 1.7416 15 6 8.0849 -5.1964 0.7740 16 6 8.7621 -5.3401 2.1490 17 6 9.0235 -3.9795 2.7873 18 7 7.8015 -3.1510 2.8407 19 6 7.3092 -2.9692 1.4859 20 1 8.0988 -2.5738 0.8470 21 6 6.0250 -2.1573 1.3075 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6798 0.8911 24 1 3.8753 -0.6802 -0.8889 25 1 3.6587 -3.1499 -0.8891 26 1 3.6581 -3.1504 0.8908 27 1 5.2030 -4.7061 -0.3819 28 1 6.6643 -3.9986 -1.1307 29 1 8.7548 -4.6890 0.0797 30 1 7.8176 -6.1790 0.3853 31 1 9.7098 -5.8643 2.0264 32 1 8.1159 -5.9233 2.8051 33 1 9.7823 -3.4551 2.2064 34 1 9.3945 -4.1301 3.8010 35 1 7.0997 -3.5790 3.4260 36 1 6.2476 -1.0913 1.2638 37 1 5.3196 -2.3684 2.1112 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221947694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:55 Heat of formation + Delta-G solvation = -2.031625 kcal Electronic energy + Delta-G solvation = -15824.429514 eV Core-core repulsion = 13407.802350 eV Total energy + Delta-G solvation = -2416.627164 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.23791 -36.56713 -33.28132 -32.42549 -31.44897 -28.94129 -27.70609 -25.26925 -23.03033 -21.60369 -21.10381 -20.48351 -19.79614 -16.82500 -15.86183 -15.46303 -14.98551 -14.73476 -14.53940 -13.92606 -13.71693 -13.21509 -12.91664 -12.61417 -12.48856 -12.20913 -11.84873 -11.60060 -11.28180 -11.18170 -10.96881 -10.89461 -10.76871 -10.53752 -10.06579 -9.71256 -9.65224 -9.18160 -8.50247 -8.38805 -7.87316 -6.01577 -3.99732 3.36182 3.42793 3.48962 3.92759 4.35621 4.49767 4.52403 4.59862 4.81650 4.93551 5.11657 5.14868 5.33473 5.42059 5.46518 5.53486 5.58136 5.65388 5.71041 5.85276 5.90112 5.98826 6.05758 6.09036 6.25315 6.28890 6.40828 6.78276 6.85862 7.17597 7.21784 7.29907 7.53949 7.62510 7.87739 8.55746 9.02165 9.61270 11.11799 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.051437 B = 0.005854 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.222359 B = 4781.724997 C = 5058.198379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.006 4.006 10 C 0.066 3.934 11 N -0.529 5.529 12 C 0.051 3.949 13 C -0.157 4.157 14 H 0.070 0.930 15 C -0.103 4.103 16 C -0.155 4.155 17 C 0.054 3.946 18 N -0.666 5.666 19 C 0.074 3.926 20 H 0.093 0.907 21 C 0.055 3.945 22 H 0.263 0.737 23 H 0.015 0.985 24 H 0.020 0.980 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.339 0.661 36 H 0.084 0.916 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.977 -9.645 3.897 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.088 0.912 9 C -0.044 4.044 10 C -0.061 4.061 11 N -0.254 5.254 12 C -0.077 4.077 13 C -0.178 4.178 14 H 0.088 0.912 15 C -0.141 4.141 16 C -0.195 4.195 17 C -0.075 4.075 18 N -0.293 5.293 19 C -0.037 4.037 20 H 0.111 0.889 21 C -0.073 4.073 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.156 0.844 36 H 0.102 0.898 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.307 -8.541 3.552 20.511 hybrid contribution -0.432 -0.669 0.410 0.896 sum 17.875 -9.211 3.962 20.495 Atomic orbital electron populations 1.69917 1.06336 1.26901 1.51270 1.24991 0.94700 0.99195 0.94448 0.86748 0.80379 0.83410 0.78602 1.20232 1.21512 1.18863 1.21093 0.89491 0.94461 1.50961 0.91230 1.19529 0.96324 0.91689 0.96849 1.22337 0.83695 1.00422 0.99636 1.64449 1.10328 1.20591 1.30006 1.22482 0.97899 0.90478 0.96863 1.22844 0.96914 0.98324 0.99734 0.91166 1.21364 0.96047 0.99924 0.96791 1.22242 1.01110 0.98897 0.97216 1.22053 0.93302 0.91319 1.00850 1.60970 1.08417 1.49356 1.10595 1.22442 0.97621 0.93818 0.89849 0.88878 1.22705 0.93761 0.99983 0.90888 0.92755 0.96639 0.96163 0.91552 0.95542 0.92594 0.90827 0.91442 0.91896 0.91470 0.92287 0.91026 0.90853 0.84357 0.89782 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.33 13.96 55.43 0.77 -27.56 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.15 4.10 -27.88 -0.11 -0.27 16 10 C 0.07 1.38 4.56 -3.82 -0.02 1.36 16 11 N -0.53 -9.33 5.22 -231.63 -1.21 -10.54 16 12 C 0.05 0.73 6.57 -3.17 -0.02 0.71 16 13 C -0.16 -1.89 2.43 -90.19 -0.22 -2.11 16 14 H 0.07 0.89 7.97 -51.93 -0.41 0.47 16 15 C -0.10 -1.00 5.74 -26.91 -0.15 -1.16 16 16 C -0.16 -1.32 5.98 -26.47 -0.16 -1.48 16 17 C 0.05 0.50 6.45 -3.60 -0.02 0.48 16 18 N -0.67 -7.66 6.98 -105.97 -0.74 -8.40 16 19 C 0.07 0.96 2.82 -67.19 -0.19 0.77 16 20 H 0.09 1.25 7.96 -51.93 -0.41 0.83 16 21 C 0.05 0.89 5.70 -2.64 -0.02 0.87 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.02 0.38 6.58 -51.93 -0.34 0.04 16 24 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 25 H 0.07 1.38 8.00 -51.93 -0.42 0.96 16 26 H 0.03 0.55 7.85 -51.93 -0.41 0.14 16 27 H 0.06 0.80 7.55 -51.93 -0.39 0.41 16 28 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 29 H 0.07 0.65 8.07 -51.93 -0.42 0.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.34 3.74 8.61 -39.29 -0.34 3.40 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.05 0.86 7.66 -51.93 -0.40 0.46 16 LS Contribution 284.83 15.07 4.29 4.29 Total: -1.00 -30.55 284.83 -9.36 -39.92 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.47 Total: -0.93 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.34 Total: -14.42 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -1.17 Total: -46.50 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.55 -9.36 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221947694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.887 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds