Wall clock time and date at job start Mon Mar 30 2020 03:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00204 * 2 1 4 4 H 1.48496 * 109.46805 * 239.99789 * 3 2 1 5 5 H 1.48493 * 109.46795 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47074 * 120.00187 * 3 2 1 7 7 C 1.37878 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00020 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47278 * 184.99745 * 9 7 2 11 11 C 1.47039 * 110.99782 * 58.53853 * 10 9 7 12 12 C 1.52916 * 109.05335 * 176.26375 * 11 10 9 13 13 N 1.47122 * 109.76598 * 58.80929 * 12 11 10 14 14 C 1.47045 * 109.88299 * 177.90298 * 13 12 11 15 15 C 1.52908 * 109.88998 * 184.73186 * 14 13 12 16 16 C 1.53178 * 109.00817 * 300.40890 * 15 14 13 17 17 C 1.53005 * 108.87312 * 58.27462 * 16 15 14 18 18 C 1.46828 * 111.17143 * 301.60334 * 13 12 11 19 19 H 1.08995 * 109.51658 * 297.22619 * 18 13 12 20 20 C 1.46841 * 111.00416 * 295.20202 * 10 9 7 21 21 H 0.96998 * 119.99681 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47050 * 65.00167 * 9 7 2 23 23 H 1.08994 * 109.47103 * 305.00347 * 9 7 2 24 24 H 1.08998 * 109.53656 * 296.13568 * 11 10 9 25 25 H 1.09000 * 109.53980 * 56.38817 * 11 10 9 26 26 H 1.09003 * 109.42165 * 178.90247 * 12 11 10 27 27 H 1.09001 * 109.42302 * 298.77573 * 12 11 10 28 28 H 1.09003 * 109.40404 * 304.85657 * 14 13 12 29 29 H 1.09004 * 109.40315 * 64.59910 * 14 13 12 30 30 H 1.09001 * 109.54856 * 60.26506 * 15 14 13 31 31 H 1.09001 * 109.54995 * 180.55052 * 15 14 13 32 32 H 1.09004 * 109.57391 * 178.09631 * 16 15 14 33 33 H 1.09010 * 109.56914 * 298.33465 * 16 15 14 34 34 H 1.09000 * 109.44993 * 182.02185 * 17 16 15 35 35 H 1.09004 * 109.44797 * 62.10924 * 17 16 15 36 36 H 1.09003 * 109.42341 * 63.14576 * 20 10 9 37 37 H 1.08997 * 109.41885 * 303.32020 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2009 -3.6131 0.1218 11 6 2.9966 -3.4954 1.3526 12 6 3.9015 -4.7213 1.4813 13 7 4.7813 -4.8158 0.3059 14 6 5.6870 -5.9652 0.4503 15 6 6.6791 -5.9951 -0.7129 16 6 5.9023 -6.1078 -2.0283 17 6 4.9449 -4.9196 -2.1411 18 6 4.0011 -4.9033 -0.9349 19 1 3.4029 -5.8144 -0.9254 20 6 3.0783 -3.6868 -1.0533 21 1 -0.4849 0.8401 -0.0004 22 1 0.6935 -2.5969 -0.9311 23 1 0.5585 -2.5189 0.8420 24 1 3.6080 -2.5942 1.3066 25 1 2.3304 -3.4419 2.2137 26 1 4.5085 -4.6309 2.3821 27 1 3.2876 -5.6197 1.5466 28 1 6.2332 -5.8800 1.3898 29 1 5.1049 -6.8868 0.4537 30 1 7.2674 -5.0775 -0.7142 31 1 7.3411 -6.8544 -0.6056 32 1 6.5993 -6.0959 -2.8662 33 1 5.3348 -7.0386 -2.0387 34 1 4.3613 -5.0095 -3.0572 35 1 5.5181 -3.9928 -2.1658 36 1 3.6800 -2.7800 -1.1139 37 1 2.4711 -3.7788 -1.9538 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226201801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:12 Heat of formation + Delta-G solvation = -3.969579 kcal Electronic energy + Delta-G solvation = -16294.816364 eV Core-core repulsion = 13878.105164 eV Total energy + Delta-G solvation = -2416.711200 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.45514 -36.23818 -33.41444 -32.39910 -31.08299 -28.80962 -26.77955 -24.28939 -23.35677 -22.37829 -21.49694 -19.52536 -19.07637 -16.35951 -15.62349 -15.13882 -14.70931 -14.44905 -14.13013 -13.93874 -13.46525 -13.24696 -12.88927 -12.61719 -11.83414 -11.78264 -11.37996 -11.22684 -11.00282 -10.92101 -10.80022 -10.60822 -10.41403 -10.26903 -10.08465 -9.91925 -9.74953 -9.37510 -8.40342 -7.98282 -7.14321 -5.99850 -4.08750 3.31226 3.35692 3.38875 4.18674 4.43389 4.88900 4.97291 4.99788 5.13433 5.30507 5.44735 5.53136 5.60236 5.74141 5.74387 5.75811 5.95186 5.97887 6.01638 6.08668 6.15623 6.21367 6.27257 6.36612 6.50848 6.68777 6.82975 6.92419 7.25812 7.42202 7.51773 7.55069 7.93098 8.09137 8.31535 8.33294 9.01847 9.57955 11.05219 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.039028 B = 0.007225 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.262755 B = 3874.740238 C = 4005.680380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.187 3.813 10 N -0.544 5.544 11 C 0.064 3.936 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.054 3.946 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.113 4.113 18 C 0.089 3.911 19 H 0.040 0.960 20 C 0.068 3.932 21 H 0.262 0.738 22 H 0.026 0.974 23 H 0.034 0.966 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.446 -11.070 -1.027 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.587 4.587 8 H 0.076 0.924 9 C 0.061 3.939 10 N -0.268 5.268 11 C -0.065 4.065 12 C -0.070 4.070 13 N -0.255 5.255 14 C -0.074 4.074 15 C -0.154 4.154 16 C -0.157 4.157 17 C -0.151 4.151 18 C -0.019 4.019 19 H 0.058 0.942 20 C -0.061 4.061 21 H 0.072 0.928 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.266 -10.954 -1.025 15.048 hybrid contribution 0.369 1.058 0.023 1.121 sum 10.635 -9.896 -1.001 14.562 Atomic orbital electron populations 1.69937 1.06022 1.26893 1.50266 1.24963 0.94752 0.99124 0.94943 0.86701 0.79667 0.83263 0.78667 1.20269 1.21242 1.20247 1.21740 0.93416 0.92041 1.51539 0.92354 1.19732 0.90880 0.85542 0.97714 1.62774 1.16857 1.46162 1.00981 1.21923 0.94885 0.95693 0.93962 1.22230 0.94018 0.98569 0.92232 1.62298 1.20139 1.40611 1.02472 1.22064 0.94925 0.91838 0.98579 1.21569 0.97535 1.01780 0.94489 1.21565 0.98286 0.98473 0.97377 1.21617 0.97448 0.98767 0.97268 1.21718 0.92880 0.98319 0.89027 0.94207 1.21973 0.93962 0.95723 0.94412 0.92797 0.95544 0.94752 0.93221 0.91335 0.91344 0.94961 0.91269 0.95461 0.91194 0.92063 0.92123 0.92510 0.91623 0.91161 0.93529 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.55 -15.30 7.66 -34.44 -0.26 -15.56 16 8 H 0.06 1.63 5.79 -52.49 -0.30 1.33 16 9 C 0.19 4.91 5.15 -4.98 -0.03 4.89 16 10 N -0.54 -12.10 4.94 -235.97 -1.17 -13.27 16 11 C 0.06 1.31 5.21 -3.79 -0.02 1.29 16 12 C 0.06 0.96 5.53 -3.75 -0.02 0.94 16 13 N -0.53 -8.62 4.71 -226.31 -1.07 -9.68 16 14 C 0.05 0.71 5.37 -3.79 -0.02 0.69 16 15 C -0.12 -1.33 6.10 -26.69 -0.16 -1.49 16 16 C -0.12 -1.38 6.01 -26.64 -0.16 -1.54 16 17 C -0.11 -1.57 5.29 -26.64 -0.14 -1.71 16 18 C 0.09 1.49 2.35 -67.59 -0.16 1.33 16 19 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 20 C 0.07 1.38 4.52 -3.78 -0.02 1.37 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.03 0.74 8.11 -51.93 -0.42 0.32 16 23 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 25 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 1.04 6.77 -51.93 -0.35 0.69 16 37 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 LS Contribution 281.91 15.07 4.25 4.25 Total: -1.00 -29.18 281.91 -9.82 -39.00 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.47 Total: -3.18 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.09 Total: -8.06 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -1.49 Total: -48.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.18 -9.82 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226201801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.035 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds