Wall clock time and date at job start Mon Mar 30 2020 03:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00147 * 2 1 4 4 H 1.48496 * 109.47379 * 239.99970 * 3 2 1 5 5 H 1.48500 * 109.46786 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47358 * 119.99697 * 3 2 1 7 7 C 1.38816 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00130 * 163.06261 * 7 2 1 9 9 N 1.36935 * 119.99967 * 343.07309 * 7 2 1 10 10 C 1.46929 * 120.63872 * 331.84046 * 9 7 2 11 11 C 1.53190 * 108.80118 * 233.61128 * 10 9 7 12 12 C 1.53054 * 109.31518 * 305.35852 * 11 10 9 13 13 C 1.52966 * 109.53983 * 61.27034 * 12 11 10 14 14 C 1.53066 * 109.52725 * 58.67068 * 13 12 11 15 15 C 1.53130 * 109.14747 * 177.75334 * 14 13 12 16 16 C 1.53035 * 109.26565 * 302.41378 * 15 14 13 17 17 N 1.46848 * 109.56041 * 59.18256 * 16 15 14 18 18 C 1.46871 * 111.18632 * 298.25512 * 17 16 15 19 19 C 1.46937 * 120.64111 * 151.82536 * 9 7 2 20 20 H 0.96992 * 120.00251 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.57834 * 113.81981 * 10 9 7 22 22 H 1.08998 * 109.58108 * 353.41229 * 10 9 7 23 23 H 1.09000 * 109.49686 * 65.31122 * 11 10 9 24 24 H 1.09000 * 109.49493 * 185.40100 * 11 10 9 25 25 H 1.09003 * 109.45631 * 181.29443 * 12 11 10 26 26 H 1.08998 * 109.45614 * 301.24943 * 12 11 10 27 27 H 1.09006 * 109.52413 * 297.65344 * 14 13 12 28 28 H 1.08993 * 109.52535 * 57.84693 * 14 13 12 29 29 H 1.08996 * 109.50571 * 182.47238 * 15 14 13 30 30 H 1.09000 * 109.50271 * 62.34938 * 15 14 13 31 31 H 1.09001 * 109.45555 * 299.14853 * 16 15 14 32 32 H 1.09003 * 109.43757 * 179.19619 * 16 15 14 33 33 H 1.00899 * 110.99750 * 174.16615 * 17 16 15 34 34 H 1.08992 * 109.46728 * 301.66229 * 18 17 16 35 35 H 1.08991 * 109.45711 * 181.67600 * 18 17 16 36 36 H 1.08998 * 109.58526 * 246.24952 * 19 9 7 37 37 H 1.08998 * 109.58983 * 6.68162 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2719 9 7 1.3702 -2.3622 0.3463 10 6 0.2262 -2.3401 1.2681 11 6 0.4975 -3.3186 2.4152 12 6 0.8122 -4.7007 1.8378 13 6 2.0658 -4.6172 0.9652 14 6 3.2400 -4.1069 1.8041 15 6 4.5022 -4.0800 0.9375 16 6 4.7672 -5.4834 0.3877 17 7 3.6150 -5.9253 -0.4083 18 6 2.4007 -6.0044 0.4141 19 6 1.8138 -3.6531 -0.1975 20 1 -0.4850 0.8400 -0.0004 21 1 -0.6767 -2.6411 0.7370 22 1 0.0989 -1.3342 1.6683 23 1 1.3470 -2.9667 3.0004 24 1 -0.3832 -3.3831 3.0542 25 1 0.9830 -5.4042 2.6527 26 1 -0.0285 -5.0419 1.2339 27 1 3.0221 -3.1004 2.1616 28 1 3.3959 -4.7707 2.6544 29 1 5.3513 -3.7592 1.5409 30 1 4.3604 -3.3856 0.1094 31 1 4.9227 -6.1745 1.2162 32 1 5.6572 -5.4645 -0.2413 33 1 3.8043 -6.8078 -0.8594 34 1 2.5669 -6.6937 1.2419 35 1 1.5717 -6.3626 -0.1960 36 1 1.0405 -4.0604 -0.8488 37 1 2.7351 -3.5141 -0.7632 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228106688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:20 Heat of formation + Delta-G solvation = 11.447489 kcal Electronic energy + Delta-G solvation = -16875.883146 eV Core-core repulsion = 14459.840480 eV Total energy + Delta-G solvation = -2416.042666 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.42781 -35.92553 -33.07748 -31.26550 -30.33442 -30.26403 -25.50075 -25.12431 -23.46104 -22.11639 -21.30217 -19.81293 -17.54153 -16.44728 -16.12795 -14.74204 -14.42333 -13.89639 -13.80660 -13.56602 -13.46909 -13.21417 -12.52108 -12.20989 -12.10760 -11.70704 -11.26788 -11.03241 -10.93092 -10.64931 -10.53032 -10.21854 -10.12752 -9.92106 -9.88220 -9.54877 -9.24154 -9.18082 -8.34862 -8.11971 -6.50990 -5.67483 -3.08443 3.44342 3.49713 3.51035 4.46482 4.58839 5.17294 5.27155 5.40011 5.49007 5.50791 5.66529 5.76111 5.80573 5.87752 5.96230 6.04636 6.12350 6.23490 6.28419 6.39245 6.49105 6.57826 6.74598 6.77307 6.81531 6.98512 7.05118 7.17193 7.23647 7.33812 7.51668 7.63607 7.78209 7.90497 8.57732 9.34107 9.98987 10.56619 11.40959 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.032334 B = 0.010139 C = 0.008687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.752803 B = 2760.901329 C = 3222.488971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.898 3.102 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.063 0.937 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.143 4.143 12 C -0.098 4.098 13 C -0.071 4.071 14 C -0.099 4.099 15 C -0.119 4.119 16 C 0.062 3.938 17 N -0.685 5.685 18 C 0.072 3.928 19 C 0.168 3.832 20 H 0.252 0.748 21 H 0.014 0.986 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.020 0.980 32 H 0.066 0.934 33 H 0.334 0.666 34 H 0.020 0.980 35 H 0.068 0.932 36 H 0.010 0.990 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.380 -10.828 3.255 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.729 3.271 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.182 4.182 12 C -0.136 4.136 13 C -0.074 4.074 14 C -0.137 4.137 15 C -0.157 4.157 16 C -0.067 4.067 17 N -0.315 5.315 18 C -0.057 4.057 19 C 0.042 3.958 20 H 0.062 0.938 21 H 0.032 0.968 22 H 0.102 0.898 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.038 0.962 35 H 0.087 0.913 36 H 0.028 0.972 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.131 -10.029 2.999 11.658 hybrid contribution 0.541 -0.021 0.562 0.780 sum 5.671 -10.050 3.562 12.077 Atomic orbital electron populations 1.70025 1.05197 1.25314 1.54454 1.25011 0.95221 0.98219 1.01394 0.86426 0.78919 0.83741 0.78042 1.20989 1.21797 1.21196 1.19118 0.92416 0.84849 1.40899 0.91896 1.44052 1.35544 1.01615 1.49985 1.20751 0.88744 0.98005 0.88085 1.22223 0.99822 0.96261 0.99931 1.21405 0.96957 0.97441 0.97816 1.21009 0.94500 0.94290 0.97567 1.21505 0.93757 1.02059 0.96351 1.21627 0.97555 0.96198 1.00276 1.21904 0.92846 0.96742 0.95217 1.60195 1.03648 1.34682 1.32983 1.21944 0.92146 0.96826 0.94815 1.20833 0.97742 0.85658 0.91593 0.93791 0.96768 0.89773 0.92556 0.93679 0.94149 0.92886 0.90035 0.94350 0.92630 0.90151 0.96196 0.91572 0.84895 0.96207 0.91324 0.97233 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 11.20 55.49 0.62 -26.12 16 2 C 0.00 -0.01 4.92 -17.43 -0.09 -0.10 16 3 Si 0.90 22.08 29.59 -169.99 -5.03 17.05 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.73 9.58 -15.06 -0.14 -6.87 16 8 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.93 2.39 -172.35 -0.41 -15.34 16 10 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 11 C -0.14 -2.82 5.74 -26.60 -0.15 -2.97 16 12 C -0.10 -1.73 4.72 -26.72 -0.13 -1.85 16 13 C -0.07 -1.27 0.52 -154.43 -0.08 -1.35 16 14 C -0.10 -1.74 4.25 -26.63 -0.11 -1.85 16 15 C -0.12 -1.92 5.75 -26.65 -0.15 -2.07 16 16 C 0.06 0.85 6.55 -3.83 -0.03 0.83 16 17 N -0.68 -9.74 6.23 -113.84 -0.71 -10.45 16 18 C 0.07 1.09 5.28 -3.85 -0.02 1.07 16 19 C 0.17 3.67 4.79 -3.73 -0.02 3.66 16 20 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.08 2.29 6.06 -51.93 -0.31 1.98 16 23 H 0.06 1.13 6.40 -51.93 -0.33 0.79 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.66 6.06 -51.93 -0.31 1.34 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.50 6.46 -51.93 -0.34 1.17 16 31 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.33 3.88 8.90 -39.29 -0.35 3.53 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 1.49 5.71 -51.93 -0.30 1.20 16 LS Contribution 273.44 15.07 4.12 4.12 Total: -1.00 -29.19 273.44 -8.49 -37.68 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.14 Total: 0.45 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.94 Total: -7.38 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.50 Total: -51.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.19 -8.49 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228106688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.124 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds