Wall clock time and date at job start Mon Mar 30 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00147 * 2 1 4 4 H 1.48496 * 109.47379 * 239.99970 * 3 2 1 5 5 H 1.48500 * 109.46786 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47358 * 119.99697 * 3 2 1 7 7 C 1.38816 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00130 * 163.06261 * 7 2 1 9 9 N 1.36935 * 119.99967 * 343.07309 * 7 2 1 10 10 C 1.46929 * 120.63872 * 331.84046 * 9 7 2 11 11 C 1.53190 * 108.80118 * 233.61128 * 10 9 7 12 12 C 1.53054 * 109.31518 * 305.35852 * 11 10 9 13 13 C 1.52966 * 109.53983 * 61.27034 * 12 11 10 14 14 C 1.53066 * 109.52725 * 58.67068 * 13 12 11 15 15 C 1.53130 * 109.14747 * 177.75334 * 14 13 12 16 16 C 1.53035 * 109.26565 * 302.41378 * 15 14 13 17 17 N 1.46848 * 109.56041 * 59.18256 * 16 15 14 18 18 C 1.46871 * 111.18632 * 298.25512 * 17 16 15 19 19 C 1.46937 * 120.64111 * 151.82536 * 9 7 2 20 20 H 0.96992 * 120.00251 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.57834 * 113.81981 * 10 9 7 22 22 H 1.08998 * 109.58108 * 353.41229 * 10 9 7 23 23 H 1.09000 * 109.49686 * 65.31122 * 11 10 9 24 24 H 1.09000 * 109.49493 * 185.40100 * 11 10 9 25 25 H 1.09003 * 109.45631 * 181.29443 * 12 11 10 26 26 H 1.08998 * 109.45614 * 301.24943 * 12 11 10 27 27 H 1.09006 * 109.52413 * 297.65344 * 14 13 12 28 28 H 1.08993 * 109.52535 * 57.84693 * 14 13 12 29 29 H 1.08996 * 109.50571 * 182.47238 * 15 14 13 30 30 H 1.09000 * 109.50271 * 62.34938 * 15 14 13 31 31 H 1.09001 * 109.45555 * 299.14853 * 16 15 14 32 32 H 1.09003 * 109.43757 * 179.19619 * 16 15 14 33 33 H 1.00899 * 110.99750 * 174.16615 * 17 16 15 34 34 H 1.08992 * 109.46728 * 301.66229 * 18 17 16 35 35 H 1.08991 * 109.45711 * 181.67600 * 18 17 16 36 36 H 1.08998 * 109.58526 * 246.24952 * 19 9 7 37 37 H 1.08998 * 109.58983 * 6.68162 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2719 9 7 1.3702 -2.3622 0.3463 10 6 0.2262 -2.3401 1.2681 11 6 0.4975 -3.3186 2.4152 12 6 0.8122 -4.7007 1.8378 13 6 2.0658 -4.6172 0.9652 14 6 3.2400 -4.1069 1.8041 15 6 4.5022 -4.0800 0.9375 16 6 4.7672 -5.4834 0.3877 17 7 3.6150 -5.9253 -0.4083 18 6 2.4007 -6.0044 0.4141 19 6 1.8138 -3.6531 -0.1975 20 1 -0.4850 0.8400 -0.0004 21 1 -0.6767 -2.6411 0.7370 22 1 0.0989 -1.3342 1.6683 23 1 1.3470 -2.9667 3.0004 24 1 -0.3832 -3.3831 3.0542 25 1 0.9830 -5.4042 2.6527 26 1 -0.0285 -5.0419 1.2339 27 1 3.0221 -3.1004 2.1616 28 1 3.3959 -4.7707 2.6544 29 1 5.3513 -3.7592 1.5409 30 1 4.3604 -3.3856 0.1094 31 1 4.9227 -6.1745 1.2162 32 1 5.6572 -5.4645 -0.2413 33 1 3.8043 -6.8078 -0.8594 34 1 2.5669 -6.6937 1.2419 35 1 1.5717 -6.3626 -0.1960 36 1 1.0405 -4.0604 -0.8488 37 1 2.7351 -3.5141 -0.7632 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228106688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:19 Heat of formation + Delta-G solvation = -7.305474 kcal Electronic energy + Delta-G solvation = -16876.696335 eV Core-core repulsion = 14459.840480 eV Total energy + Delta-G solvation = -2416.855855 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87335 -37.49769 -34.88935 -32.54580 -32.30278 -31.81704 -27.29703 -26.82355 -24.75662 -23.85078 -22.84883 -21.33512 -19.12969 -18.36290 -17.39819 -16.76990 -15.85926 -15.51195 -15.28765 -15.06279 -14.98710 -14.55322 -14.22131 -13.98922 -13.53939 -13.17674 -12.89585 -12.84025 -12.63482 -12.36067 -12.23798 -11.90460 -11.83170 -11.72092 -11.47260 -11.05675 -10.83315 -10.76598 -10.45965 -9.20840 -8.58366 -7.82140 -5.26241 1.45934 1.47977 1.54804 2.53630 3.30936 3.38882 3.71545 3.97085 4.01557 4.09126 4.27638 4.41616 4.43703 4.54247 4.68357 4.73369 4.77885 4.87486 4.88919 4.98529 5.05338 5.06679 5.12232 5.18674 5.33850 5.41551 5.48733 5.54477 5.63013 5.66270 5.74130 5.84265 6.19833 6.44041 6.68992 7.20665 7.94329 8.46395 9.23710 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.032334 B = 0.010139 C = 0.008687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.752803 B = 2760.901329 C = 3222.488971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.061 0.939 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.132 4.132 12 C -0.095 4.095 13 C -0.067 4.067 14 C -0.095 4.095 15 C -0.119 4.119 16 C 0.068 3.932 17 N -0.700 5.700 18 C 0.079 3.921 19 C 0.172 3.828 20 H 0.248 0.752 21 H -0.011 1.011 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.352 0.648 34 H 0.043 0.957 35 H 0.071 0.929 36 H -0.008 1.008 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.844 -12.751 4.161 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.791 3.209 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.078 0.922 9 N -0.327 5.327 10 C 0.050 3.950 11 C -0.171 4.171 12 C -0.133 4.133 13 C -0.069 4.069 14 C -0.133 4.133 15 C -0.156 4.156 16 C -0.061 4.061 17 N -0.333 5.333 18 C -0.051 4.051 19 C 0.047 3.953 20 H 0.057 0.943 21 H 0.007 0.993 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.172 0.828 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.010 0.990 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.617 -11.992 3.901 14.241 hybrid contribution 0.087 0.566 0.237 0.620 sum 6.704 -11.425 4.139 13.878 Atomic orbital electron populations 1.70186 1.06607 1.25623 1.56028 1.25749 0.95987 1.01309 1.01832 0.85410 0.77612 0.79616 0.78270 1.20284 1.22089 1.20474 1.19388 0.92495 0.86074 1.40040 0.92159 1.44272 1.35527 1.02312 1.50569 1.20573 0.87710 0.97506 0.89212 1.22047 1.00622 0.96346 0.98095 1.21391 0.96733 0.96417 0.98711 1.20912 0.95031 0.94993 0.95956 1.21428 0.94153 1.00505 0.97174 1.21595 0.97492 0.97414 0.99146 1.21853 0.93073 0.95128 0.96035 1.60107 1.03641 1.36183 1.33329 1.21811 0.92752 0.94806 0.95685 1.20865 0.96255 0.85107 0.93114 0.94315 0.99329 0.93226 0.92763 0.91697 0.90724 0.92982 0.93518 0.91978 0.91226 0.93608 0.94267 0.90050 0.82821 0.93891 0.91048 0.99009 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 11.20 21.65 0.24 -57.19 16 2 C -0.05 -3.12 4.92 84.86 0.42 -2.70 16 3 Si 0.96 46.39 29.59 68.60 2.03 48.42 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.25 -14.21 9.58 84.03 0.81 -13.40 16 8 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 9 N -0.60 -31.47 2.39 -699.18 -1.67 -33.14 16 10 C 0.18 8.86 5.30 86.36 0.46 9.32 16 11 C -0.13 -5.11 5.74 30.68 0.18 -4.93 16 12 C -0.09 -3.10 4.72 30.60 0.14 -2.96 16 13 C -0.07 -2.27 0.52 -52.13 -0.03 -2.30 16 14 C -0.10 -3.14 4.25 30.66 0.13 -3.01 16 15 C -0.12 -3.61 5.75 30.65 0.18 -3.44 16 16 C 0.07 1.63 6.55 86.32 0.57 2.20 16 17 N -0.70 -17.82 6.23 -514.08 -3.20 -21.02 16 18 C 0.08 2.12 5.28 86.30 0.46 2.58 16 19 C 0.17 7.59 4.79 86.34 0.41 8.01 16 20 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 21 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 22 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 23 H 0.05 2.13 6.40 -2.39 -0.02 2.11 16 24 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.87 6.06 -2.38 -0.01 1.85 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.70 6.46 -2.39 -0.02 1.69 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.35 6.93 8.90 -89.69 -0.80 6.13 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H 0.05 2.51 5.71 -2.39 -0.01 2.50 16 Total: -1.00 -64.73 273.44 1.35 -63.38 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.24 Total: 10.19 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 3.71 Total: -10.64 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -4.64 Total: -111.35 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -64.73 1.35 -63.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228106688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.073 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds