Wall clock time and date at job start Mon Mar 30 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99760 * 2 1 4 4 H 1.48501 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47498 * 300.00537 * 3 2 1 6 6 H 1.48503 * 109.47063 * 60.00415 * 3 2 1 7 7 C 1.38812 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99894 * 194.65701 * 7 2 1 9 9 N 1.36930 * 119.99812 * 14.65910 * 7 2 1 10 10 C 1.46503 * 119.99778 * 187.95966 * 9 7 2 11 11 C 1.52998 * 109.47214 * 265.29772 * 10 9 7 12 12 C 1.52996 * 117.50388 * 243.01577 * 11 10 9 13 13 C 1.52995 * 117.50013 * 174.39069 * 11 10 9 14 14 C 1.46501 * 120.00200 * 7.96054 * 9 7 2 15 15 C 1.52998 * 109.46993 * 262.25172 * 14 9 7 16 16 H 1.09001 * 110.46424 * 292.19477 * 15 14 9 17 17 C 1.54382 * 110.41014 * 169.77988 * 15 14 9 18 18 C 1.54261 * 105.05999 * 217.36619 * 17 15 14 19 19 C 1.54384 * 105.06021 * 0.02562 * 18 17 15 20 20 N 1.48560 * 104.59527 * 23.84779 * 19 18 17 21 21 H 0.97002 * 120.00141 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47289 * 25.29724 * 10 9 7 23 23 H 1.09001 * 109.46947 * 145.29869 * 10 9 7 24 24 H 1.09006 * 115.54953 * 28.72768 * 11 10 9 25 25 H 1.09007 * 117.49173 * 359.97438 * 12 11 10 26 26 H 1.08999 * 117.50459 * 145.01930 * 12 11 10 27 27 H 1.09004 * 117.50476 * 214.97958 * 13 11 10 28 28 H 1.08996 * 117.49830 * 0.02562 * 13 11 10 29 29 H 1.08999 * 109.47272 * 142.25258 * 14 9 7 30 30 H 1.08994 * 109.46935 * 22.25522 * 14 9 7 31 31 H 1.08989 * 110.32458 * 336.26880 * 17 15 14 32 32 H 1.09007 * 110.32043 * 98.47441 * 17 15 14 33 33 H 1.09001 * 110.31963 * 118.89673 * 18 17 15 34 34 H 1.08995 * 110.32467 * 241.10220 * 18 17 15 35 35 H 1.09004 * 110.40795 * 265.07171 * 19 18 17 36 36 H 1.09001 * 110.40833 * 142.63034 * 19 18 17 37 37 H 1.00903 * 110.99694 * 200.96069 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0639 -1.2174 0.2361 9 7 1.3590 -2.3685 -0.3012 10 6 2.0427 -3.6534 -0.1333 11 6 2.6655 -4.0775 -1.4649 12 6 2.1496 -5.3665 -2.1075 13 6 3.5391 -5.3335 -1.4679 14 6 -0.0213 -2.3317 -0.7907 15 6 -0.9816 -2.5921 0.3715 16 1 -0.8830 -3.6186 0.7247 17 6 -2.4369 -2.3081 -0.0585 18 6 -3.1033 -1.6711 1.1783 19 6 -1.9944 -1.6232 2.2514 20 7 -0.7254 -1.6355 1.4792 21 1 -0.4850 0.8401 0.0004 22 1 2.8256 -3.5529 0.6183 23 1 1.3246 -4.4076 0.1885 24 1 2.9528 -3.2631 -2.1301 25 1 1.3666 -5.9127 -1.5813 26 1 2.0970 -5.4004 -3.1957 27 1 4.4007 -5.3458 -2.1355 28 1 3.6697 -5.8580 -0.5214 29 1 -0.1571 -3.0988 -1.5530 30 1 -0.2283 -1.3517 -1.2205 31 1 -2.4548 -1.6135 -0.8982 32 1 -2.9414 -3.2373 -0.3240 33 1 -3.4483 -0.6636 0.9456 34 1 -3.9349 -2.2874 1.5198 35 1 -2.0540 -2.4981 2.8988 36 1 -2.0732 -0.7084 2.8388 37 1 0.0443 -1.9452 2.0535 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236207451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:56 Heat of formation + Delta-G solvation = 81.274586 kcal Electronic energy + Delta-G solvation = -16463.222955 eV Core-core repulsion = 14050.208220 eV Total energy + Delta-G solvation = -2413.014736 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -37.77092 -36.81099 -34.42610 -30.84683 -29.04981 -28.98340 -25.82243 -24.49517 -21.89330 -21.51747 -20.04268 -19.67868 -18.70357 -16.64292 -15.46708 -15.29776 -14.42121 -14.22165 -13.66813 -13.47971 -12.83986 -12.64753 -11.90499 -11.63137 -11.32114 -11.07995 -10.98783 -10.79275 -10.71901 -10.56572 -10.43490 -10.29778 -9.97702 -9.78052 -9.69961 -9.48794 -9.44065 -9.11565 -8.16653 -7.18291 -6.24768 -5.14018 -2.74147 3.53024 3.61650 3.62286 4.38924 4.72198 5.25002 5.38007 5.50522 5.53617 5.64879 5.72265 5.80994 5.99337 6.01502 6.04258 6.13889 6.20890 6.34630 6.41363 6.52964 6.54006 6.59563 6.65050 6.73388 6.74118 6.88655 7.04465 7.09850 7.13646 7.32583 7.99396 8.05930 8.35755 8.71510 8.84345 9.52928 10.17603 10.61188 11.61253 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.012851 C = 0.008305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.279714 B = 2178.280008 C = 3370.499265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.009 3.991 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.272 4.272 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.179 3.821 11 C -0.150 4.150 12 C -0.188 4.188 13 C -0.194 4.194 14 C 0.165 3.835 15 C 0.076 3.924 16 H -0.003 1.003 17 C -0.107 4.107 18 C -0.112 4.112 19 C 0.028 3.972 20 N -0.555 5.555 21 H 0.239 0.761 22 H 0.048 0.952 23 H 0.029 0.971 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.085 0.915 29 H -0.004 1.004 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.004 0.996 36 H 0.060 0.940 37 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -6.667 -0.164 6.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.192 4.192 3 Si 0.719 3.281 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.401 4.401 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.051 3.949 11 C -0.171 4.171 12 C -0.226 4.226 13 C -0.232 4.232 14 C 0.040 3.960 15 C -0.037 4.037 16 H 0.015 0.985 17 C -0.146 4.146 18 C -0.150 4.150 19 C -0.103 4.103 20 N -0.183 5.183 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.120 0.880 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.014 0.986 30 H 0.143 0.857 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.022 0.978 36 H 0.078 0.922 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.225 -5.836 -0.525 6.268 hybrid contribution 0.467 -0.151 0.578 0.758 sum -1.758 -5.987 0.053 6.240 Atomic orbital electron populations 1.70289 1.03360 1.22378 1.50650 1.24747 0.95311 0.96805 1.02291 0.86470 0.79146 0.85759 0.76698 1.21191 1.22332 1.22405 1.18989 0.92469 0.84330 1.44324 0.91831 1.43931 1.10788 1.00438 1.75921 1.20277 0.94452 0.88429 0.91750 1.23532 1.01030 0.90203 1.02316 1.22896 0.96814 1.03597 0.99243 1.22851 0.93824 1.04455 1.02043 1.21410 0.81710 1.01888 0.91028 1.22691 0.94267 0.90296 0.96422 0.98539 1.22156 0.95825 0.98506 0.98122 1.22120 0.96624 1.00144 0.96138 1.22937 0.94122 0.97857 0.95346 1.64269 1.00097 1.47129 1.06780 0.94875 0.93377 0.95303 0.87991 0.89662 0.90022 0.89944 0.89619 0.98609 0.85728 0.91160 0.94169 0.92022 0.93802 0.97805 0.92195 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.73 6.86 55.49 0.38 -21.35 16 2 C 0.01 0.24 5.06 -17.43 -0.09 0.15 16 3 Si 0.89 21.65 29.58 -169.99 -5.03 16.62 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.27 -7.17 9.50 -15.06 -0.14 -7.32 16 8 H 0.06 1.71 7.87 -52.49 -0.41 1.30 16 9 N -0.59 -14.13 2.33 -173.24 -0.40 -14.53 16 10 C 0.18 3.69 5.97 -4.04 -0.02 3.67 16 11 C -0.15 -2.77 6.01 -90.62 -0.54 -3.32 16 12 C -0.19 -2.99 10.18 -26.73 -0.27 -3.26 16 13 C -0.19 -2.97 10.25 -26.73 -0.27 -3.24 16 14 C 0.17 3.88 4.85 -4.04 -0.02 3.86 16 15 C 0.08 1.63 3.26 -66.06 -0.22 1.42 16 16 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 17 C -0.11 -2.05 6.55 -25.35 -0.17 -2.22 16 18 C -0.11 -2.01 7.00 -25.35 -0.18 -2.19 16 19 C 0.03 0.54 7.47 -2.18 -0.02 0.52 16 20 N -0.56 -12.49 3.73 -102.73 -0.38 -12.87 16 21 H 0.24 6.40 8.31 -40.82 -0.34 6.06 16 22 H 0.05 1.00 8.00 -51.93 -0.42 0.59 16 23 H 0.03 0.58 7.84 -51.93 -0.41 0.17 16 24 H 0.10 2.09 8.14 -51.93 -0.42 1.66 16 25 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.00 -0.09 8.13 -51.93 -0.42 -0.52 16 30 H 0.13 3.29 5.09 -51.93 -0.26 3.02 16 31 H 0.07 1.42 7.73 -51.94 -0.40 1.01 16 32 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.32 7.49 8.90 -39.29 -0.35 7.14 16 LS Contribution 291.24 15.07 4.39 4.39 Total: -1.00 -26.04 291.24 -9.44 -35.48 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.45 Total: 4.18 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.94 Total: -11.92 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.41 Total: -48.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.04 -9.44 -35.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236207451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.758 kcal (2) G-P(sol) polarization free energy of solvation -26.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds