Wall clock time and date at job start Mon Mar 30 2020 03:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00042 * 2 1 4 4 H 1.48502 * 109.47450 * 270.00042 * 3 2 1 5 5 H 1.48497 * 109.47040 * 30.00414 * 3 2 1 6 6 H 1.48508 * 109.47286 * 150.00370 * 3 2 1 7 7 C 1.38811 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99603 * 158.99147 * 7 2 1 9 9 N 1.36936 * 120.00238 * 338.99090 * 7 2 1 10 10 C 1.46494 * 119.99819 * 324.13249 * 9 7 2 11 11 C 1.52992 * 109.47097 * 269.99476 * 10 9 7 12 12 H 1.08995 * 109.50740 * 305.08166 * 11 10 9 13 13 C 1.53121 * 109.50353 * 185.00120 * 11 10 9 14 14 C 1.53124 * 109.16057 * 182.40576 * 13 11 10 15 15 C 1.53034 * 109.27771 * 57.66066 * 14 13 11 16 16 N 1.46850 * 109.51842 * 300.81665 * 15 14 13 17 17 C 1.46847 * 111.19927 * 61.74643 * 16 15 14 18 18 C 1.46504 * 119.99721 * 144.12815 * 9 7 2 19 19 C 1.52999 * 117.50161 * 3.24275 * 18 9 7 20 20 C 1.52990 * 117.50157 * 294.58198 * 18 9 7 21 21 H 0.96995 * 119.99672 * 355.70286 * 1 2 3 22 22 H 1.08991 * 109.47317 * 30.00039 * 10 9 7 23 23 H 1.09005 * 109.46561 * 150.00108 * 10 9 7 24 24 H 1.08996 * 109.52572 * 302.31078 * 13 11 10 25 25 H 1.08998 * 109.52259 * 62.43964 * 13 11 10 26 26 H 1.08999 * 109.50207 * 177.59640 * 14 13 11 27 27 H 1.08995 * 109.50221 * 297.67550 * 14 13 11 28 28 H 1.09001 * 109.46706 * 60.83266 * 15 14 13 29 29 H 1.08998 * 109.46559 * 180.80634 * 15 14 13 30 30 H 1.00897 * 111.00422 * 297.64384 * 16 15 14 31 31 H 1.09005 * 109.46529 * 178.24137 * 17 16 15 32 32 H 1.09002 * 109.46152 * 58.27177 * 17 16 15 33 33 H 1.09004 * 115.54692 * 148.90948 * 18 9 7 34 34 H 1.09005 * 117.49577 * 359.97438 * 19 18 9 35 35 H 1.08998 * 117.50139 * 145.01576 * 19 18 9 36 36 H 1.09006 * 117.49728 * 214.98349 * 20 18 9 37 37 H 1.08997 * 117.50074 * 359.97150 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6525 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0364 -1.2331 -0.3359 9 7 1.3938 -2.3488 0.4241 10 6 0.4341 -2.2982 1.5298 11 6 1.1705 -2.5082 2.8543 12 1 1.7374 -3.4382 2.8120 13 6 0.1550 -2.5800 3.9980 14 6 0.9031 -2.7299 5.3256 15 6 1.8656 -1.5527 5.4989 16 7 2.8169 -1.5281 4.3805 17 6 2.1253 -1.3375 3.0992 18 6 1.6940 -3.6262 -0.2274 19 6 2.7603 -3.6263 -1.3246 20 6 1.2831 -3.7858 -1.6924 21 1 -0.4849 0.8377 0.0629 22 1 -0.0592 -1.3263 1.5384 23 1 -0.3112 -3.0829 1.4001 24 1 -0.4389 -1.6662 4.0157 25 1 -0.5008 -3.4379 3.8495 26 1 0.1874 -2.7386 6.1476 27 1 1.4657 -3.6634 5.3229 28 1 1.3004 -0.6208 5.5156 29 1 2.4102 -1.6639 6.4365 30 1 3.3802 -2.3651 4.3664 31 1 2.8585 -1.2923 2.2938 32 1 1.5590 -0.4066 3.1271 33 1 1.6299 -4.5066 0.4121 34 1 3.2382 -2.6757 -1.5620 35 1 3.3975 -4.5068 -1.4073 36 1 0.9489 -4.7713 -2.0169 37 1 0.7889 -2.9406 -2.1715 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236208002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:23 Heat of formation + Delta-G solvation = 34.580379 kcal Electronic energy + Delta-G solvation = -16476.212598 eV Core-core repulsion = 14061.173050 eV Total energy + Delta-G solvation = -2415.039548 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.49612 -36.74278 -33.70040 -31.77135 -30.86198 -29.33740 -25.58024 -23.52057 -22.84904 -21.41995 -21.01585 -19.87298 -19.25425 -16.28100 -15.36974 -15.36122 -14.71293 -14.29295 -14.18521 -13.65549 -13.32452 -13.00506 -12.14918 -11.93774 -11.70526 -11.53528 -11.16278 -10.95771 -10.82894 -10.69846 -10.63953 -10.41271 -10.19959 -9.99240 -9.70946 -9.59278 -9.54973 -9.20363 -8.44352 -7.75596 -6.51972 -5.76067 -3.37617 3.36203 3.44928 3.49399 4.46519 4.86021 4.95627 5.12755 5.25590 5.35790 5.38799 5.54911 5.75016 5.91175 5.94265 5.96619 6.12091 6.17115 6.19716 6.28343 6.38936 6.46753 6.51154 6.53434 6.64915 6.79601 6.88149 6.99311 7.07002 7.23808 7.26648 7.62728 7.73147 7.81402 7.92884 8.49475 9.17611 9.80517 10.37075 11.18543 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.012152 C = 0.009064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.698596 B = 2303.630567 C = 3088.351010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.014 3.986 3 Si 0.888 3.112 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.551 5.551 10 C 0.153 3.847 11 C -0.135 4.135 12 H 0.049 0.951 13 C -0.113 4.113 14 C -0.154 4.154 15 C 0.057 3.943 16 N -0.693 5.693 17 C 0.073 3.927 18 C 0.122 3.878 19 C -0.196 4.196 20 C -0.223 4.223 21 H 0.254 0.746 22 H 0.101 0.899 23 H 0.022 0.978 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.332 0.668 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.726 -5.248 6.939 8.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.186 4.186 3 Si 0.717 3.283 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.268 5.268 10 C 0.027 3.973 11 C -0.157 4.157 12 H 0.067 0.933 13 C -0.152 4.152 14 C -0.193 4.193 15 C -0.073 4.073 16 N -0.320 5.320 17 C -0.055 4.055 18 C 0.013 3.987 19 C -0.235 4.235 20 C -0.265 4.265 21 H 0.064 0.936 22 H 0.119 0.881 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.754 -4.379 6.982 8.426 hybrid contribution -0.142 -0.117 -0.231 0.295 sum 1.611 -4.496 6.752 8.270 Atomic orbital electron populations 1.70034 1.05523 1.25950 1.51119 1.25088 0.94891 0.98541 1.00110 0.86531 0.79948 0.84011 0.77801 1.21389 1.21454 1.19892 1.18978 0.93777 0.85213 1.40145 0.91809 1.43423 1.48642 1.01630 1.33062 1.20963 0.90166 1.02866 0.83325 1.22401 0.97605 0.98683 0.97018 0.93278 1.21573 0.98097 1.01302 0.94203 1.22242 0.99530 0.99405 0.98159 1.21965 0.93473 0.97537 0.94300 1.60815 1.23924 1.43031 1.04224 1.22065 0.96990 0.96954 0.89531 1.21203 1.00202 0.90490 0.86824 1.23021 0.91853 1.01760 1.06820 1.23361 0.97446 1.00597 1.05047 0.93622 0.88116 0.95974 0.92187 0.92904 0.92519 0.92686 0.91442 0.91922 0.85211 0.88543 0.91875 0.89896 0.88495 0.90916 0.91413 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.60 11.32 55.49 0.63 -23.98 16 2 C 0.01 0.37 4.98 -17.43 -0.09 0.28 16 3 Si 0.89 21.20 29.60 -169.99 -5.03 16.17 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -6.48 6.58 -15.06 -0.10 -6.58 16 8 H 0.06 1.67 6.58 -52.48 -0.35 1.33 16 9 N -0.55 -13.11 2.66 -165.67 -0.44 -13.55 16 10 C 0.15 3.46 4.84 -4.05 -0.02 3.44 16 11 C -0.13 -2.56 2.54 -90.54 -0.23 -2.79 16 12 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 13 C -0.11 -1.86 5.29 -26.60 -0.14 -2.01 16 14 C -0.15 -2.15 6.08 -26.65 -0.16 -2.31 16 15 C 0.06 0.84 6.55 -3.83 -0.03 0.81 16 16 N -0.69 -11.69 6.87 -113.81 -0.78 -12.48 16 17 C 0.07 1.45 5.37 -3.83 -0.02 1.43 16 18 C 0.12 2.60 6.56 -67.93 -0.45 2.15 16 19 C -0.20 -3.88 9.80 -26.70 -0.26 -4.14 16 20 C -0.22 -4.60 10.36 -26.70 -0.28 -4.88 16 21 H 0.25 6.88 8.32 -40.82 -0.34 6.54 16 22 H 0.10 2.58 5.37 -51.93 -0.28 2.30 16 23 H 0.02 0.49 8.07 -51.93 -0.42 0.07 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.33 5.16 8.86 -39.29 -0.35 4.81 16 31 H 0.10 2.17 6.41 -51.93 -0.33 1.83 16 32 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.10 2.08 6.39 -51.93 -0.33 1.75 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 288.41 15.07 4.35 4.35 Total: -1.00 -26.67 288.41 -9.31 -35.98 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.26 Total: 8.09 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.77 Total: -14.59 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.59 Total: -50.00 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.67 -9.31 -35.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236208002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.563 kcal (2) G-P(sol) polarization free energy of solvation -26.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds