Wall clock time and date at job start Mon Mar 30 2020 03:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00176 * 3 2 1 5 5 H 1.48500 * 109.46803 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47243 * 119.99877 * 3 2 1 7 7 C 1.37873 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00250 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47352 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46974 * 180.02562 * 10 9 7 12 12 C 1.48716 * 110.99585 * 189.99789 * 11 10 9 13 13 H 1.08997 * 112.23635 * 44.77512 * 12 11 10 14 14 C 1.54612 * 104.22528 * 282.48542 * 12 11 10 15 15 C 1.54285 * 104.83802 * 334.82396 * 14 12 11 16 16 C 1.48709 * 111.00475 * 75.53269 * 11 10 9 17 17 H 1.09006 * 112.23254 * 315.83426 * 16 11 10 18 18 C 1.53704 * 107.24144 * 192.26761 * 16 11 10 19 19 C 1.53137 * 108.89156 * 295.91160 * 18 16 11 20 20 H 1.08989 * 109.42642 * 293.93404 * 19 18 16 21 21 N 1.46898 * 109.42942 * 174.09241 * 19 18 16 22 22 C 1.53601 * 110.08753 * 53.06538 * 19 18 16 23 23 H 0.97004 * 120.00276 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47350 * 59.99342 * 9 7 2 25 25 H 1.09007 * 109.47158 * 299.99756 * 9 7 2 26 26 H 1.08994 * 109.47112 * 59.99768 * 10 9 7 27 27 H 1.09000 * 109.46743 * 299.99471 * 10 9 7 28 28 H 1.08994 * 110.36521 * 93.66279 * 14 12 11 29 29 H 1.08998 * 110.36461 * 215.98496 * 14 12 11 30 30 H 1.09002 * 110.36831 * 241.15263 * 15 14 12 31 31 H 1.09009 * 110.45864 * 118.88735 * 15 14 12 32 32 H 1.09003 * 109.56889 * 55.73815 * 18 16 11 33 33 H 1.09004 * 109.56740 * 176.08762 * 18 16 11 34 34 H 1.00898 * 111.00029 * 180.02562 * 21 19 18 35 35 H 1.00911 * 110.99855 * 303.95686 * 21 19 18 36 36 H 1.09006 * 110.13133 * 186.80354 * 22 19 18 37 37 H 1.08994 * 108.58814 * 66.71043 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 2.4284 -6.0793 0.2435 13 1 3.1284 -5.8824 1.0554 14 6 3.1346 -6.2943 -1.1150 15 6 2.1547 -5.7281 -2.1637 16 6 0.9455 -5.2226 -1.3436 17 1 0.4810 -4.3447 -1.7927 18 6 -0.0482 -6.3839 -1.1806 19 6 0.7166 -7.6312 -0.7285 20 1 1.3895 -7.9518 -1.5236 21 7 -0.2371 -8.7086 -0.4327 22 6 1.5540 -7.3131 0.5193 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8714 -3.6038 0.8922 27 1 2.8727 -3.6046 -0.8878 28 1 4.0774 -5.7481 -1.1430 29 1 3.3053 -7.3565 -1.2899 30 1 1.8437 -6.5120 -2.8544 31 1 2.6146 -4.9038 -2.7090 32 1 -0.7956 -6.1223 -0.4315 33 1 -0.5382 -6.5816 -2.1340 34 1 0.2427 -9.5436 -0.1315 35 1 -0.9146 -8.4134 0.2544 36 1 2.1897 -8.1621 0.7709 37 1 0.8774 -7.1033 1.3476 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238652272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:03 Heat of formation + Delta-G solvation = -7.818291 kcal Electronic energy + Delta-G solvation = -16178.070550 eV Core-core repulsion = 13761.192457 eV Total energy + Delta-G solvation = -2416.878093 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.51075 -35.30454 -33.32289 -31.43874 -31.05635 -29.13409 -28.14780 -24.34352 -24.04706 -22.08991 -20.54770 -19.74487 -18.47074 -16.58933 -16.18160 -15.76995 -14.76572 -14.45852 -14.09619 -13.64441 -13.43243 -12.98806 -12.61018 -12.53082 -12.28191 -11.99507 -11.43712 -11.21395 -11.04005 -10.96998 -10.71856 -10.55581 -10.45885 -10.13432 -10.09369 -9.79843 -9.30288 -9.10765 -8.64865 -8.31540 -7.86227 -5.97242 -3.99797 3.34279 3.38730 3.40946 4.32895 4.50459 4.54627 4.89690 4.99411 5.12263 5.28709 5.31728 5.38348 5.39868 5.49398 5.60141 5.82543 5.84563 5.99654 6.04075 6.11808 6.20752 6.22395 6.31395 6.39684 6.45036 6.58602 6.63809 7.01196 7.15269 7.41790 7.42677 7.56220 7.80920 7.92474 8.12316 8.46238 9.07526 9.63704 11.14054 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.050138 B = 0.006275 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.320555 B = 4461.295132 C = 4646.008890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.032 3.968 10 C 0.052 3.948 11 N -0.501 5.501 12 C 0.062 3.938 13 H 0.086 0.914 14 C -0.147 4.147 15 C -0.149 4.149 16 C 0.065 3.935 17 H 0.100 0.900 18 C -0.096 4.096 19 C 0.090 3.910 20 H 0.077 0.923 21 N -0.846 5.846 22 C -0.138 4.138 23 H 0.261 0.739 24 H 0.015 0.985 25 H 0.022 0.978 26 H 0.057 0.943 27 H 0.025 0.975 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.335 0.665 35 H 0.339 0.661 36 H 0.056 0.944 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.015 -15.150 -1.484 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.075 4.075 11 N -0.223 5.223 12 C -0.048 4.048 13 H 0.105 0.895 14 C -0.186 4.186 15 C -0.188 4.188 16 C -0.045 4.045 17 H 0.118 0.882 18 C -0.135 4.135 19 C -0.021 4.021 20 H 0.095 0.905 21 N -0.373 5.373 22 C -0.178 4.178 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.075 0.925 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.213 -14.918 -1.828 15.192 hybrid contribution 1.625 1.025 0.382 1.958 sum 3.838 -13.893 -1.446 14.486 Atomic orbital electron populations 1.69965 1.06009 1.26638 1.50627 1.24985 0.94810 0.99106 0.95340 0.86674 0.79590 0.83255 0.78560 1.20323 1.21264 1.20265 1.21165 0.92892 0.91150 1.50909 0.92953 1.19019 0.93882 0.89999 0.97635 1.22417 0.96981 0.89075 0.99006 1.65491 1.29230 1.01750 1.25842 1.22974 0.93432 0.92004 0.96363 0.89543 1.22914 0.99004 1.00587 0.96135 1.22925 0.97013 1.00497 0.98407 1.23032 0.94660 0.97585 0.89216 0.88175 1.21650 0.97628 0.92747 1.01438 1.21666 0.92696 0.91351 0.96430 0.90502 1.59042 1.19063 1.07069 1.52151 1.22582 0.98931 0.96855 0.99442 0.92965 0.96691 0.95922 0.92480 0.95692 0.92020 0.91728 0.91434 0.91657 0.91153 0.91566 0.85331 0.84860 0.92506 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.85 5.10 -27.88 -0.14 0.70 16 10 C 0.05 1.12 4.59 -3.82 -0.02 1.10 16 11 N -0.50 -9.10 4.95 -212.96 -1.06 -10.15 16 12 C 0.06 0.92 3.67 -65.49 -0.24 0.68 16 13 H 0.09 1.27 7.99 -51.93 -0.41 0.86 16 14 C -0.15 -1.98 5.46 -25.21 -0.14 -2.12 16 15 C -0.15 -2.15 5.25 -25.22 -0.13 -2.28 16 16 C 0.06 1.07 3.49 -65.50 -0.23 0.84 16 17 H 0.10 1.89 6.78 -51.93 -0.35 1.54 16 18 C -0.10 -1.38 5.20 -26.29 -0.14 -1.52 16 19 C 0.09 1.10 2.89 -67.33 -0.19 0.91 16 20 H 0.08 0.95 5.60 -51.94 -0.29 0.66 16 21 N -0.85 -9.05 9.28 -4.35 -0.04 -9.09 16 22 C -0.14 -1.73 5.22 -26.05 -0.14 -1.87 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.01 0.41 6.86 -51.93 -0.36 0.06 16 25 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.22 7.98 -51.93 -0.41 0.80 16 27 H 0.02 0.53 6.89 -51.93 -0.36 0.17 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.75 7.08 -51.93 -0.37 0.39 16 30 H 0.07 0.86 7.08 -51.93 -0.37 0.50 16 31 H 0.06 1.00 7.89 -51.92 -0.41 0.59 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.33 2.97 9.04 -39.29 -0.36 2.62 16 35 H 0.34 3.47 8.99 -39.29 -0.35 3.12 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 280.89 15.07 4.23 4.23 Total: -1.00 -29.92 280.89 -9.04 -38.96 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.12 Total: 2.87 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.78 Total: -17.21 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.36 Total: -45.66 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.92 -9.04 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238652272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.142 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds