Wall clock time and date at job start Mon Mar 30 2020 03:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00176 * 3 2 1 5 5 H 1.48500 * 109.46803 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47243 * 119.99877 * 3 2 1 7 7 C 1.37873 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00250 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47352 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46974 * 180.02562 * 10 9 7 12 12 C 1.48716 * 110.99585 * 189.99789 * 11 10 9 13 13 H 1.08997 * 112.23635 * 44.77512 * 12 11 10 14 14 C 1.54612 * 104.22528 * 282.48542 * 12 11 10 15 15 C 1.54285 * 104.83802 * 334.82396 * 14 12 11 16 16 C 1.48709 * 111.00475 * 75.53269 * 11 10 9 17 17 H 1.09006 * 112.23254 * 315.83426 * 16 11 10 18 18 C 1.53704 * 107.24144 * 192.26761 * 16 11 10 19 19 C 1.53137 * 108.89156 * 295.91160 * 18 16 11 20 20 H 1.08989 * 109.42642 * 293.93404 * 19 18 16 21 21 N 1.46898 * 109.42942 * 174.09241 * 19 18 16 22 22 C 1.53601 * 110.08753 * 53.06538 * 19 18 16 23 23 H 0.97004 * 120.00276 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47350 * 59.99342 * 9 7 2 25 25 H 1.09007 * 109.47158 * 299.99756 * 9 7 2 26 26 H 1.08994 * 109.47112 * 59.99768 * 10 9 7 27 27 H 1.09000 * 109.46743 * 299.99471 * 10 9 7 28 28 H 1.08994 * 110.36521 * 93.66279 * 14 12 11 29 29 H 1.08998 * 110.36461 * 215.98496 * 14 12 11 30 30 H 1.09002 * 110.36831 * 241.15263 * 15 14 12 31 31 H 1.09009 * 110.45864 * 118.88735 * 15 14 12 32 32 H 1.09003 * 109.56889 * 55.73815 * 18 16 11 33 33 H 1.09004 * 109.56740 * 176.08762 * 18 16 11 34 34 H 1.00898 * 111.00029 * 180.02562 * 21 19 18 35 35 H 1.00911 * 110.99855 * 303.95686 * 21 19 18 36 36 H 1.09006 * 110.13133 * 186.80354 * 22 19 18 37 37 H 1.08994 * 108.58814 * 66.71043 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 2.4284 -6.0793 0.2435 13 1 3.1284 -5.8824 1.0554 14 6 3.1346 -6.2943 -1.1150 15 6 2.1547 -5.7281 -2.1637 16 6 0.9455 -5.2226 -1.3436 17 1 0.4810 -4.3447 -1.7927 18 6 -0.0482 -6.3839 -1.1806 19 6 0.7166 -7.6312 -0.7285 20 1 1.3895 -7.9518 -1.5236 21 7 -0.2371 -8.7086 -0.4327 22 6 1.5540 -7.3131 0.5193 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8714 -3.6038 0.8922 27 1 2.8727 -3.6046 -0.8878 28 1 4.0774 -5.7481 -1.1430 29 1 3.3053 -7.3565 -1.2899 30 1 1.8437 -6.5120 -2.8544 31 1 2.6146 -4.9038 -2.7090 32 1 -0.7956 -6.1223 -0.4315 33 1 -0.5382 -6.5816 -2.1340 34 1 0.2427 -9.5436 -0.1315 35 1 -0.9146 -8.4134 0.2544 36 1 2.1897 -8.1621 0.7709 37 1 0.8774 -7.1033 1.3476 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238652272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:03 Heat of formation + Delta-G solvation = -29.576642 kcal Electronic energy + Delta-G solvation = -16179.014063 eV Core-core repulsion = 13761.192457 eV Total energy + Delta-G solvation = -2417.821606 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.74585 -36.59976 -35.23100 -33.14919 -32.24487 -30.41750 -29.68463 -26.25850 -25.18195 -23.55838 -22.04738 -21.11144 -19.66847 -18.60299 -17.28026 -17.19915 -16.54268 -15.81477 -15.52422 -14.97111 -14.57564 -14.45679 -14.21181 -13.92775 -13.57945 -13.40584 -13.22477 -12.86978 -12.58809 -12.49037 -12.17531 -12.09463 -11.70460 -11.66012 -11.42286 -11.27918 -11.25126 -11.01685 -10.54941 -9.56147 -9.29417 -8.20864 -6.32996 1.38578 1.42164 1.50170 2.39261 3.06243 3.12086 3.56637 3.73246 3.87895 3.98912 4.19258 4.21828 4.24326 4.42009 4.44268 4.48524 4.58775 4.70016 4.79721 4.92853 4.97728 5.02896 5.08006 5.11815 5.18999 5.22912 5.34429 5.42541 5.46887 5.65571 5.78898 6.07408 6.20317 6.27774 6.36640 6.67379 6.84232 7.36350 8.91188 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.050138 B = 0.006275 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.320555 B = 4461.295132 C = 4646.008890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.041 3.959 10 C 0.072 3.928 11 N -0.519 5.519 12 C 0.057 3.943 13 H 0.087 0.913 14 C -0.139 4.139 15 C -0.143 4.143 16 C 0.057 3.943 17 H 0.063 0.937 18 C -0.091 4.091 19 C 0.100 3.900 20 H 0.087 0.913 21 N -0.846 5.846 22 C -0.130 4.130 23 H 0.264 0.736 24 H -0.012 1.012 25 H -0.013 1.013 26 H 0.056 0.944 27 H 0.025 0.975 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.350 0.650 35 H 0.342 0.658 36 H 0.086 0.914 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 -16.586 -1.688 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.004 3.996 10 C -0.056 4.056 11 N -0.242 5.242 12 C -0.053 4.053 13 H 0.106 0.894 14 C -0.178 4.178 15 C -0.182 4.182 16 C -0.052 4.052 17 H 0.081 0.919 18 C -0.129 4.129 19 C -0.012 4.012 20 H 0.105 0.895 21 N -0.375 5.375 22 C -0.170 4.170 23 H 0.073 0.927 24 H 0.006 0.994 25 H 0.005 0.995 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.105 0.895 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.807 -16.388 -2.030 16.946 hybrid contribution 1.057 1.444 0.452 1.846 sum 4.864 -14.944 -1.577 15.794 Atomic orbital electron populations 1.70115 1.07906 1.27856 1.51371 1.25982 0.95735 1.03378 0.94547 0.85476 0.78259 0.77934 0.79222 1.19115 1.20721 1.19082 1.21601 0.93456 0.92335 1.51051 0.92254 1.18836 0.94110 0.92111 0.94542 1.21993 0.95445 0.89284 0.98855 1.65429 1.30061 1.01589 1.27097 1.23130 0.93501 0.91302 0.97322 0.89436 1.22872 0.98136 1.02315 0.94475 1.22874 0.96016 1.00681 0.98679 1.23008 0.96118 0.97249 0.88845 0.91909 1.21579 0.96891 0.93038 1.01393 1.21513 0.92600 0.90549 0.96518 0.89489 1.58986 1.18823 1.07072 1.52570 1.22559 0.98743 0.96581 0.99118 0.92743 0.99372 0.99466 0.92511 0.95695 0.92273 0.88724 0.89144 0.93110 0.92967 0.90872 0.83682 0.84581 0.89507 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.36 13.29 21.45 0.28 -58.07 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.31 5.10 29.85 0.15 2.46 16 10 C 0.07 3.17 4.59 86.30 0.40 3.57 16 11 N -0.52 -19.16 4.95 -827.68 -4.10 -23.26 16 12 C 0.06 1.58 3.67 45.35 0.17 1.74 16 13 H 0.09 2.42 7.99 -2.39 -0.02 2.40 16 14 C -0.14 -3.37 5.46 31.58 0.17 -3.20 16 15 C -0.14 -3.95 5.25 31.58 0.17 -3.79 16 16 C 0.06 1.93 3.49 45.35 0.16 2.09 16 17 H 0.06 2.55 6.78 -2.38 -0.02 2.54 16 18 C -0.09 -2.55 5.20 30.88 0.16 -2.39 16 19 C 0.10 2.18 2.89 45.16 0.13 2.31 16 20 H 0.09 1.79 5.60 -2.39 -0.01 1.77 16 21 N -0.85 -15.73 9.28 -167.66 -1.56 -17.28 16 22 C -0.13 -2.91 5.22 31.04 0.16 -2.75 16 23 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 24 H -0.01 -0.72 6.86 -2.39 -0.02 -0.74 16 25 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 26 H 0.06 2.46 7.98 -2.39 -0.02 2.44 16 27 H 0.02 1.08 6.89 -2.39 -0.02 1.06 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.77 7.08 -2.39 -0.02 1.75 16 30 H 0.09 2.07 7.08 -2.39 -0.02 2.06 16 31 H 0.05 1.53 7.89 -2.38 -0.02 1.51 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.35 4.95 9.04 -89.70 -0.81 4.13 16 35 H 0.34 6.29 8.99 -89.68 -0.81 5.49 16 36 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -66.22 280.89 -1.54 -67.76 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -0.56 Total: 15.05 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 2.36 Total: -31.23 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -5.37 Total: -98.61 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.22 -1.54 -67.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238652272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.183 kcal (2) G-P(sol) polarization free energy of solvation -66.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds