Wall clock time and date at job start Mon Mar 30 2020 03:42:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86794 * 120.00082 * 2 1
4 4 H 1.48498 * 109.47675 * 270.00239 * 3 2 1
5 5 H 1.48507 * 109.46941 * 30.00441 * 3 2 1
6 6 H 1.48497 * 109.47285 * 150.00089 * 3 2 1
7 7 C 1.38821 * 119.99899 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00011 * 167.39625 * 7 2 1
9 9 N 1.36929 * 120.00049 * 347.38860 * 7 2 1
10 10 C 1.46932 * 120.63098 * 327.16083 * 9 7 2
11 11 C 1.53191 * 108.77269 * 233.62803 * 10 9 7
12 12 C 1.53045 * 109.31432 * 305.36472 * 11 10 9
13 13 C 1.53039 * 109.53932 * 61.36555 * 12 11 10
14 14 C 1.46930 * 120.63236 * 147.18001 * 9 7 2
15 15 H 1.08994 * 109.58541 * 246.15834 * 14 9 7
16 16 C 1.53005 * 109.69924 * 6.51226 * 14 9 7
17 17 H 1.08995 * 109.90590 * 59.95312 * 16 14 9
18 18 C 1.53992 * 109.91290 * 181.05733 * 16 14 9
19 19 C 1.54591 * 105.13982 * 120.57949 * 18 16 14
20 20 C 1.54940 * 102.92303 * 21.95635 * 19 18 16
21 21 N 1.47899 * 109.91785 * 298.85178 * 16 14 9
22 22 H 0.96998 * 119.99870 * 359.97438 * 1 2 3
23 23 H 1.08993 * 109.58971 * 113.84508 * 10 9 7
24 24 H 1.08997 * 109.70561 * 353.48232 * 10 9 7
25 25 H 1.09004 * 109.49750 * 185.41247 * 11 10 9
26 26 H 1.09006 * 109.52774 * 65.33198 * 11 10 9
27 27 H 1.09000 * 109.45883 * 301.34313 * 12 11 10
28 28 H 1.09003 * 109.44619 * 181.37796 * 12 11 10
29 29 H 1.09003 * 109.49872 * 178.68364 * 13 12 11
30 30 H 1.09000 * 109.52360 * 58.59805 * 13 12 11
31 31 H 1.09007 * 110.30632 * 239.49618 * 18 16 14
32 32 H 1.09005 * 110.30980 * 1.56140 * 18 16 14
33 33 H 1.08998 * 110.72573 * 140.31595 * 19 18 16
34 34 H 1.08999 * 110.72255 * 263.41813 * 19 18 16
35 35 H 1.09001 * 110.66760 * 81.01824 * 20 19 18
36 36 H 1.08999 * 110.66574 * 204.15504 * 20 19 18
37 37 H 1.00901 * 110.99763 * 335.82596 * 21 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0465 -1.4000
5 1 1.4476 2.6526 0.7002
6 1 3.5477 1.4401 0.7000
7 6 2.0103 -1.2022 -0.0005
8 1 3.0708 -1.2134 -0.2046
9 7 1.3504 -2.3739 0.2579
10 6 0.2104 -2.4024 1.1844
11 6 0.4687 -3.4712 2.2511
12 6 0.7565 -4.8097 1.5672
13 6 2.0099 -4.6816 0.6984
14 6 1.7691 -3.6266 -0.3858
15 1 0.9859 -3.9695 -1.0618
16 6 3.0608 -3.3955 -1.1726
17 1 3.8494 -3.0575 -0.5004
18 6 3.4898 -4.6991 -1.8711
19 6 3.5189 -4.3587 -3.3788
20 6 3.6697 -2.8167 -3.3830
21 7 2.8332 -2.3866 -2.2298
22 1 -0.4850 0.8400 0.0004
23 1 -0.6998 -2.6456 0.6365
24 1 0.1004 -1.4288 1.6619
25 1 -0.4105 -3.5696 2.8879
26 1 1.3266 -3.1807 2.8577
27 1 -0.0919 -5.0878 0.9419
28 1 0.9165 -5.5772 2.3245
29 1 2.2276 -5.6415 0.2301
30 1 2.8538 -4.3796 1.3187
31 1 4.4808 -5.0014 -1.5322
32 1 2.7658 -5.4899 -1.6741
33 1 4.3728 -4.8311 -3.8645
34 1 2.5883 -4.6594 -3.8601
35 1 4.7102 -2.5315 -3.2276
36 1 3.2890 -2.3955 -4.3134
37 1 1.8583 -2.3456 -2.4867
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000250888459.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:29
Heat of formation + Delta-G solvation = 17.914392 kcal
Electronic energy + Delta-G solvation = -16759.664513 eV
Core-core repulsion = 14343.902274 eV
Total energy + Delta-G solvation = -2415.762240 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-38.84791 -36.48192 -32.94448 -31.18557 -29.91889 -29.11758 -27.00649 -24.91724
-22.17161 -21.90699 -20.78192 -19.36778 -19.00145 -16.58547 -15.49286 -14.92857
-14.39636 -13.93859 -13.56708 -13.31369 -13.18073 -12.89304 -12.57698 -12.41663
-12.07569 -11.14463 -11.11246 -10.88493 -10.67040 -10.65054 -10.56285 -10.45755
-10.21503 -10.06595 -9.89380 -9.79372 -9.30319 -9.13303 -8.26478 -7.65458
-6.38277 -5.56043 -3.00742 3.53406 3.59013 3.61599 4.66410 4.84465
5.15730 5.18899 5.43088 5.56341 5.59876 5.69885 5.73936 5.82611
5.90671 5.95220 6.04817 6.16781 6.18682 6.24435 6.34221 6.42443
6.44816 6.53361 6.57627 6.72804 6.82820 6.84522 6.95439 7.18128
7.50154 7.65722 7.77879 8.15339 8.25608 8.69384 9.45393 10.05007
10.62256 11.53847
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.020087 B = 0.014141 C = 0.009027
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1393.579980 B = 1979.537879 C = 3101.082709
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.000 4.000
3 Si 0.901 3.099
4 H -0.289 1.289
5 H -0.297 1.297
6 H -0.283 1.283
7 C -0.216 4.216
8 H 0.078 0.922
9 N -0.585 5.585
10 C 0.175 3.825
11 C -0.144 4.144
12 C -0.108 4.108
13 C -0.129 4.129
14 C 0.171 3.829
15 H 0.019 0.981
16 C 0.088 3.912
17 H 0.079 0.921
18 C -0.149 4.149
19 C -0.157 4.157
20 C 0.034 3.966
21 N -0.634 5.634
22 H 0.248 0.752
23 H 0.015 0.985
24 H 0.083 0.917
25 H 0.044 0.956
26 H 0.052 0.948
27 H 0.050 0.950
28 H 0.041 0.959
29 H 0.047 0.953
30 H 0.058 0.942
31 H 0.060 0.940
32 H 0.065 0.935
33 H 0.061 0.939
34 H 0.060 0.940
35 H 0.070 0.930
36 H 0.064 0.936
37 H 0.345 0.655
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.257 -9.205 -2.128 10.363
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.196 4.196
3 Si 0.732 3.268
4 H -0.217 1.217
5 H -0.224 1.224
6 H -0.209 1.209
7 C -0.346 4.346
8 H 0.096 0.904
9 N -0.308 5.308
10 C 0.049 3.951
11 C -0.183 4.183
12 C -0.146 4.146
13 C -0.169 4.169
14 C 0.063 3.937
15 H 0.036 0.964
16 C -0.022 4.022
17 H 0.097 0.903
18 C -0.189 4.189
19 C -0.196 4.196
20 C -0.097 4.097
21 N -0.261 5.261
22 H 0.058 0.942
23 H 0.033 0.967
24 H 0.101 0.899
25 H 0.063 0.937
26 H 0.071 0.929
27 H 0.069 0.931
28 H 0.060 0.940
29 H 0.066 0.934
30 H 0.077 0.923
31 H 0.079 0.921
32 H 0.083 0.917
33 H 0.080 0.920
34 H 0.079 0.921
35 H 0.088 0.912
36 H 0.082 0.918
37 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 4.590 -8.481 -1.868 9.823
hybrid contribution -0.145 -0.006 -0.393 0.419
sum 4.446 -8.486 -2.261 9.844
Atomic orbital electron populations
1.70012 1.05225 1.24849 1.56026 1.25073 0.95102 0.98101 1.01370
0.86316 0.78904 0.84141 0.77428 1.21658 1.22397 1.20892 1.19235
0.91930 0.83107 1.40343 0.90438 1.44095 1.35961 1.03069 1.47706
1.20711 0.88715 0.96872 0.88812 1.22206 0.99842 0.96773 0.99495
1.21378 0.97746 0.97351 0.98120 1.22037 0.97902 0.98313 0.98607
1.20743 0.92921 0.88304 0.91708 0.96382 1.22305 0.98019 0.88016
0.93866 0.90277 1.22948 1.01176 0.99634 0.95094 1.23119 1.01087
0.98814 0.96628 1.23251 0.99558 0.91834 0.95009 1.63087 1.12630
1.44907 1.05492 0.94229 0.96736 0.89900 0.93702 0.92871 0.93120
0.93990 0.93422 0.92336 0.92084 0.91678 0.92020 0.92144 0.91165
0.91770 0.83762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -26.73 11.28 55.49 0.63 -26.11 16
2 C 0.00 0.01 4.99 -17.43 -0.09 -0.08 16
3 Si 0.90 22.58 29.57 -169.99 -5.03 17.55 16
4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16
6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16
7 C -0.22 -5.77 7.47 -15.06 -0.11 -5.88 16
8 H 0.08 2.10 6.00 -52.48 -0.31 1.79 16
9 N -0.59 -14.27 2.97 -164.77 -0.49 -14.76 16
10 C 0.17 4.19 5.25 -3.71 -0.02 4.18 16
11 C -0.14 -2.83 6.08 -26.61 -0.16 -2.99 16
12 C -0.11 -1.89 5.88 -26.69 -0.16 -2.05 16
13 C -0.13 -2.28 5.04 -26.61 -0.13 -2.41 16
14 C 0.17 3.48 2.17 -67.60 -0.15 3.33 16
15 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16
16 C 0.09 1.66 2.20 -66.64 -0.15 1.51 16
17 H 0.08 1.63 7.44 -51.93 -0.39 1.24 16
18 C -0.15 -2.23 6.06 -25.38 -0.15 -2.39 16
19 C -0.16 -2.17 7.06 -24.87 -0.18 -2.35 16
20 C 0.03 0.53 7.55 -1.74 -0.01 0.52 16
21 N -0.63 -12.54 5.30 -102.92 -0.55 -13.09 16
22 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16
23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16
24 H 0.08 2.23 6.30 -51.93 -0.33 1.91 16
25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16
27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.05 0.73 6.80 -51.93 -0.35 0.38 16
30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
31 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16
32 H 0.06 0.95 6.54 -51.93 -0.34 0.61 16
33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16
37 H 0.34 7.40 8.30 -39.29 -0.33 7.07 16
LS Contribution 277.58 15.07 4.18 4.18
Total: -1.00 -28.33 277.58 -8.81 -37.15
By element:
Atomic # 1 Polarization: 9.93 SS G_CDS: -6.25 Total: 3.68 kcal
Atomic # 6 Polarization: -7.30 SS G_CDS: -1.31 Total: -8.60 kcal
Atomic # 7 Polarization: -53.55 SS G_CDS: -0.41 Total: -53.96 kcal
Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal
Total LS contribution 4.18 Total: 4.18 kcal
Total: -28.33 -8.81 -37.15 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000250888459.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.060 kcal
(2) G-P(sol) polarization free energy of solvation -28.331 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.729 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.914 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds