Wall clock time and date at job start Mon Mar 30 2020 03:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00082 * 2 1 4 4 H 1.48498 * 109.47675 * 270.00239 * 3 2 1 5 5 H 1.48507 * 109.46941 * 30.00441 * 3 2 1 6 6 H 1.48497 * 109.47285 * 150.00089 * 3 2 1 7 7 C 1.38821 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00011 * 167.39625 * 7 2 1 9 9 N 1.36929 * 120.00049 * 347.38860 * 7 2 1 10 10 C 1.46932 * 120.63098 * 327.16083 * 9 7 2 11 11 C 1.53191 * 108.77269 * 233.62803 * 10 9 7 12 12 C 1.53045 * 109.31432 * 305.36472 * 11 10 9 13 13 C 1.53039 * 109.53932 * 61.36555 * 12 11 10 14 14 C 1.46930 * 120.63236 * 147.18001 * 9 7 2 15 15 H 1.08994 * 109.58541 * 246.15834 * 14 9 7 16 16 C 1.53005 * 109.69924 * 6.51226 * 14 9 7 17 17 H 1.08995 * 109.90590 * 59.95312 * 16 14 9 18 18 C 1.53992 * 109.91290 * 181.05733 * 16 14 9 19 19 C 1.54591 * 105.13982 * 120.57949 * 18 16 14 20 20 C 1.54940 * 102.92303 * 21.95635 * 19 18 16 21 21 N 1.47899 * 109.91785 * 298.85178 * 16 14 9 22 22 H 0.96998 * 119.99870 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.58971 * 113.84508 * 10 9 7 24 24 H 1.08997 * 109.70561 * 353.48232 * 10 9 7 25 25 H 1.09004 * 109.49750 * 185.41247 * 11 10 9 26 26 H 1.09006 * 109.52774 * 65.33198 * 11 10 9 27 27 H 1.09000 * 109.45883 * 301.34313 * 12 11 10 28 28 H 1.09003 * 109.44619 * 181.37796 * 12 11 10 29 29 H 1.09003 * 109.49872 * 178.68364 * 13 12 11 30 30 H 1.09000 * 109.52360 * 58.59805 * 13 12 11 31 31 H 1.09007 * 110.30632 * 239.49618 * 18 16 14 32 32 H 1.09005 * 110.30980 * 1.56140 * 18 16 14 33 33 H 1.08998 * 110.72573 * 140.31595 * 19 18 16 34 34 H 1.08999 * 110.72255 * 263.41813 * 19 18 16 35 35 H 1.09001 * 110.66760 * 81.01824 * 20 19 18 36 36 H 1.08999 * 110.66574 * 204.15504 * 20 19 18 37 37 H 1.00901 * 110.99763 * 335.82596 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0708 -1.2134 -0.2046 9 7 1.3504 -2.3739 0.2579 10 6 0.2104 -2.4024 1.1844 11 6 0.4687 -3.4712 2.2511 12 6 0.7565 -4.8097 1.5672 13 6 2.0099 -4.6816 0.6984 14 6 1.7691 -3.6266 -0.3858 15 1 0.9859 -3.9695 -1.0618 16 6 3.0608 -3.3955 -1.1726 17 1 3.8494 -3.0575 -0.5004 18 6 3.4898 -4.6991 -1.8711 19 6 3.5189 -4.3587 -3.3788 20 6 3.6697 -2.8167 -3.3830 21 7 2.8332 -2.3866 -2.2298 22 1 -0.4850 0.8400 0.0004 23 1 -0.6998 -2.6456 0.6365 24 1 0.1004 -1.4288 1.6619 25 1 -0.4105 -3.5696 2.8879 26 1 1.3266 -3.1807 2.8577 27 1 -0.0919 -5.0878 0.9419 28 1 0.9165 -5.5772 2.3245 29 1 2.2276 -5.6415 0.2301 30 1 2.8538 -4.3796 1.3187 31 1 4.4808 -5.0014 -1.5322 32 1 2.7658 -5.4899 -1.6741 33 1 4.3728 -4.8311 -3.8645 34 1 2.5883 -4.6594 -3.8601 35 1 4.7102 -2.5315 -3.2276 36 1 3.2890 -2.3955 -4.3134 37 1 1.8583 -2.3456 -2.4867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250888459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:29 Heat of formation + Delta-G solvation = 17.914392 kcal Electronic energy + Delta-G solvation = -16759.664513 eV Core-core repulsion = 14343.902274 eV Total energy + Delta-G solvation = -2415.762240 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.84791 -36.48192 -32.94448 -31.18557 -29.91889 -29.11758 -27.00649 -24.91724 -22.17161 -21.90699 -20.78192 -19.36778 -19.00145 -16.58547 -15.49286 -14.92857 -14.39636 -13.93859 -13.56708 -13.31369 -13.18073 -12.89304 -12.57698 -12.41663 -12.07569 -11.14463 -11.11246 -10.88493 -10.67040 -10.65054 -10.56285 -10.45755 -10.21503 -10.06595 -9.89380 -9.79372 -9.30319 -9.13303 -8.26478 -7.65458 -6.38277 -5.56043 -3.00742 3.53406 3.59013 3.61599 4.66410 4.84465 5.15730 5.18899 5.43088 5.56341 5.59876 5.69885 5.73936 5.82611 5.90671 5.95220 6.04817 6.16781 6.18682 6.24435 6.34221 6.42443 6.44816 6.53361 6.57627 6.72804 6.82820 6.84522 6.95439 7.18128 7.50154 7.65722 7.77879 8.15339 8.25608 8.69384 9.45393 10.05007 10.62256 11.53847 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.014141 C = 0.009027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.579980 B = 1979.537879 C = 3101.082709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.216 4.216 8 H 0.078 0.922 9 N -0.585 5.585 10 C 0.175 3.825 11 C -0.144 4.144 12 C -0.108 4.108 13 C -0.129 4.129 14 C 0.171 3.829 15 H 0.019 0.981 16 C 0.088 3.912 17 H 0.079 0.921 18 C -0.149 4.149 19 C -0.157 4.157 20 C 0.034 3.966 21 N -0.634 5.634 22 H 0.248 0.752 23 H 0.015 0.985 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 -9.205 -2.128 10.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.209 1.209 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.308 5.308 10 C 0.049 3.951 11 C -0.183 4.183 12 C -0.146 4.146 13 C -0.169 4.169 14 C 0.063 3.937 15 H 0.036 0.964 16 C -0.022 4.022 17 H 0.097 0.903 18 C -0.189 4.189 19 C -0.196 4.196 20 C -0.097 4.097 21 N -0.261 5.261 22 H 0.058 0.942 23 H 0.033 0.967 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.590 -8.481 -1.868 9.823 hybrid contribution -0.145 -0.006 -0.393 0.419 sum 4.446 -8.486 -2.261 9.844 Atomic orbital electron populations 1.70012 1.05225 1.24849 1.56026 1.25073 0.95102 0.98101 1.01370 0.86316 0.78904 0.84141 0.77428 1.21658 1.22397 1.20892 1.19235 0.91930 0.83107 1.40343 0.90438 1.44095 1.35961 1.03069 1.47706 1.20711 0.88715 0.96872 0.88812 1.22206 0.99842 0.96773 0.99495 1.21378 0.97746 0.97351 0.98120 1.22037 0.97902 0.98313 0.98607 1.20743 0.92921 0.88304 0.91708 0.96382 1.22305 0.98019 0.88016 0.93866 0.90277 1.22948 1.01176 0.99634 0.95094 1.23119 1.01087 0.98814 0.96628 1.23251 0.99558 0.91834 0.95009 1.63087 1.12630 1.44907 1.05492 0.94229 0.96736 0.89900 0.93702 0.92871 0.93120 0.93990 0.93422 0.92336 0.92084 0.91678 0.92020 0.92144 0.91165 0.91770 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.73 11.28 55.49 0.63 -26.11 16 2 C 0.00 0.01 4.99 -17.43 -0.09 -0.08 16 3 Si 0.90 22.58 29.57 -169.99 -5.03 17.55 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -5.77 7.47 -15.06 -0.11 -5.88 16 8 H 0.08 2.10 6.00 -52.48 -0.31 1.79 16 9 N -0.59 -14.27 2.97 -164.77 -0.49 -14.76 16 10 C 0.17 4.19 5.25 -3.71 -0.02 4.18 16 11 C -0.14 -2.83 6.08 -26.61 -0.16 -2.99 16 12 C -0.11 -1.89 5.88 -26.69 -0.16 -2.05 16 13 C -0.13 -2.28 5.04 -26.61 -0.13 -2.41 16 14 C 0.17 3.48 2.17 -67.60 -0.15 3.33 16 15 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 16 C 0.09 1.66 2.20 -66.64 -0.15 1.51 16 17 H 0.08 1.63 7.44 -51.93 -0.39 1.24 16 18 C -0.15 -2.23 6.06 -25.38 -0.15 -2.39 16 19 C -0.16 -2.17 7.06 -24.87 -0.18 -2.35 16 20 C 0.03 0.53 7.55 -1.74 -0.01 0.52 16 21 N -0.63 -12.54 5.30 -102.92 -0.55 -13.09 16 22 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 2.23 6.30 -51.93 -0.33 1.91 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.73 6.80 -51.93 -0.35 0.38 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.06 0.95 6.54 -51.93 -0.34 0.61 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.34 7.40 8.30 -39.29 -0.33 7.07 16 LS Contribution 277.58 15.07 4.18 4.18 Total: -1.00 -28.33 277.58 -8.81 -37.15 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.25 Total: 3.68 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.31 Total: -8.60 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.41 Total: -53.96 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.33 -8.81 -37.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250888459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.060 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds