Wall clock time and date at job start Mon Mar 30 2020 03:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99708 * 2 1 4 4 H 1.48494 * 109.46784 * 239.99777 * 3 2 1 5 5 H 1.48498 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47044 * 119.99743 * 3 2 1 7 7 C 1.37877 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99601 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99972 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47104 * 179.97438 * 9 7 2 11 11 C 1.49222 * 111.02189 * 290.42028 * 10 9 7 12 12 C 1.53075 * 103.41664 * 213.53163 * 11 10 9 13 13 H 1.09003 * 110.54980 * 284.38572 * 12 11 10 14 14 C 1.51621 * 116.62607 * 156.01161 * 12 11 10 15 15 C 1.53809 * 107.04052 * 183.69116 * 14 12 11 16 16 C 1.52534 * 111.68502 * 57.55970 * 15 14 12 17 17 C 1.53835 * 111.64711 * 305.90719 * 16 15 14 18 18 H 1.08999 * 109.93767 * 297.83477 * 17 16 15 19 19 N 1.46898 * 109.93717 * 176.60951 * 17 16 15 20 20 C 1.51451 * 107.05702 * 57.21883 * 17 16 15 21 21 H 1.09002 * 110.18730 * 54.40629 * 20 17 16 22 22 C 1.48651 * 111.00071 * 170.00140 * 10 9 7 23 23 H 0.96995 * 119.99882 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46476 * 60.00148 * 9 7 2 25 25 H 1.08997 * 109.47218 * 300.00416 * 9 7 2 26 26 H 1.08995 * 110.59553 * 95.06910 * 11 10 9 27 27 H 1.08994 * 110.66982 * 332.03133 * 11 10 9 28 28 H 1.08999 * 109.94445 * 303.07527 * 14 12 11 29 29 H 1.09005 * 109.94053 * 64.23109 * 14 12 11 30 30 H 1.09003 * 109.03938 * 178.12096 * 15 14 12 31 31 H 1.08998 * 109.04022 * 297.06521 * 15 14 12 32 32 H 1.08997 * 109.04874 * 66.46981 * 16 15 14 33 33 H 1.09007 * 109.04255 * 185.42545 * 16 15 14 34 34 H 1.00893 * 111.00554 * 62.38685 * 19 17 16 35 35 H 1.00904 * 111.00125 * 186.34424 * 19 17 16 36 36 H 1.09002 * 110.17744 * 359.79478 * 22 10 9 37 37 H 1.08996 * 110.17750 * 238.05460 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0017 10 7 2.2058 -3.6156 0.0015 11 6 2.9220 -3.7073 -1.3044 12 6 3.1416 -5.2115 -1.4843 13 1 3.9467 -5.5606 -0.8378 14 6 3.3247 -5.7062 -2.9058 15 6 3.4322 -7.2391 -2.8392 16 6 2.2052 -7.8621 -2.1812 17 6 1.9312 -7.2497 -0.7968 18 1 2.7710 -7.4467 -0.1304 19 7 0.6991 -7.8170 -0.2331 20 6 1.7688 -5.7571 -0.9956 21 1 1.0026 -5.5586 -1.7451 22 6 1.5134 -4.9086 0.2435 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5574 -0.8881 25 1 0.6248 -2.5563 0.8919 26 1 3.8764 -3.1830 -1.2559 27 1 2.3050 -3.3101 -2.1103 28 1 2.4657 -5.4199 -3.5127 29 1 4.2364 -5.2866 -3.3310 30 1 3.5316 -7.6329 -3.8507 31 1 4.3181 -7.5088 -2.2643 32 1 1.3375 -7.6992 -2.8203 33 1 2.3677 -8.9342 -2.0688 34 1 0.7898 -8.8122 -0.0939 35 1 0.4478 -7.3530 0.6270 36 1 0.4437 -4.7439 0.3725 37 1 1.9271 -5.3972 1.1256 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252850976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:46 Heat of formation + Delta-G solvation = -11.432791 kcal Electronic energy + Delta-G solvation = -16071.138628 eV Core-core repulsion = 13654.103799 eV Total energy + Delta-G solvation = -2417.034829 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86588 -35.96411 -33.64966 -32.72832 -30.25884 -28.86214 -26.57666 -26.37765 -23.17352 -21.04880 -20.82668 -19.91012 -19.46485 -16.36545 -15.68088 -15.10122 -14.99880 -14.50012 -14.30424 -14.25277 -13.35000 -13.11072 -12.76194 -12.44729 -11.93628 -11.74194 -11.63540 -11.33693 -11.17329 -10.96085 -10.69264 -10.58104 -10.46425 -10.23332 -9.91059 -9.79103 -9.70965 -9.13018 -8.64609 -8.39564 -7.19852 -5.98559 -3.99893 3.36076 3.39649 3.42958 4.40682 4.46027 4.68295 4.77428 4.99958 5.16824 5.19971 5.36420 5.37057 5.47134 5.55348 5.60860 5.81718 5.85251 5.99943 6.03569 6.11721 6.16581 6.24785 6.34642 6.39053 6.41964 6.60267 6.73289 6.83387 7.17526 7.24731 7.38374 7.47596 7.84315 8.06945 8.23970 8.57588 9.08043 9.64262 11.12366 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.045733 B = 0.006539 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.102694 B = 4280.877061 C = 4676.648586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.188 3.812 10 N -0.526 5.526 11 C 0.065 3.935 12 C -0.103 4.103 13 H 0.076 0.924 14 C -0.106 4.106 15 C -0.114 4.114 16 C -0.110 4.110 17 C 0.107 3.893 18 H 0.036 0.964 19 N -0.847 5.847 20 C -0.106 4.106 21 H 0.075 0.925 22 C 0.049 3.951 23 H 0.261 0.739 24 H -0.008 1.008 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.334 0.666 35 H 0.345 0.655 36 H 0.052 0.948 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -14.884 -3.724 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.062 3.938 10 N -0.251 5.251 11 C -0.063 4.063 12 C -0.122 4.122 13 H 0.095 0.905 14 C -0.144 4.144 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.004 4.004 18 H 0.054 0.946 19 N -0.377 5.377 20 C -0.126 4.126 21 H 0.093 0.907 22 C -0.080 4.080 23 H 0.071 0.929 24 H 0.009 0.991 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.071 0.929 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.778 -14.384 -3.977 15.670 hybrid contribution 0.308 0.553 0.226 0.672 sum 5.086 -13.831 -3.751 15.207 Atomic orbital electron populations 1.69955 1.06055 1.26817 1.51162 1.25000 0.94864 0.99294 0.95526 0.86558 0.79429 0.82777 0.78627 1.20302 1.21372 1.20185 1.21125 0.93475 0.89986 1.49849 0.92041 1.19905 0.90096 0.87805 0.95952 1.64497 1.28546 1.02255 1.29754 1.22618 0.99212 0.92907 0.91545 1.22112 0.97120 0.96804 0.96207 0.90531 1.21358 1.01889 0.94657 0.96526 1.21509 0.97806 0.95772 1.00140 1.21552 0.98501 0.98704 0.96007 1.21086 0.90269 0.94045 0.95050 0.94615 1.58703 1.35934 1.07876 1.35170 1.22115 0.97883 0.93241 0.99376 0.90655 1.22468 0.97939 0.91391 0.96157 0.92916 0.99070 0.95392 0.91081 0.93685 0.91725 0.91773 0.92156 0.92422 0.91442 0.92737 0.85400 0.84228 0.92918 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.61 8.82 -34.44 -0.30 -14.91 16 8 H 0.06 1.76 7.78 -52.49 -0.41 1.35 16 9 C 0.19 5.07 4.38 -4.98 -0.02 5.05 16 10 N -0.53 -11.78 5.21 -232.90 -1.21 -12.99 16 11 C 0.06 1.29 5.81 -2.49 -0.01 1.27 16 12 C -0.10 -1.59 2.48 -89.90 -0.22 -1.81 16 13 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 14 C -0.11 -1.37 5.71 -27.01 -0.15 -1.52 16 15 C -0.11 -1.24 5.84 -26.55 -0.16 -1.40 16 16 C -0.11 -1.25 5.46 -26.53 -0.14 -1.39 16 17 C 0.11 1.36 3.03 -68.06 -0.21 1.15 16 18 H 0.04 0.46 8.04 -51.93 -0.42 0.04 16 19 N -0.85 -9.93 9.27 -4.97 -0.05 -9.97 16 20 C -0.11 -1.67 1.95 -90.36 -0.18 -1.84 16 21 H 0.08 1.32 7.94 -51.93 -0.41 0.90 16 22 C 0.05 0.91 5.95 -3.19 -0.02 0.89 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H -0.01 -0.24 7.86 -51.93 -0.41 -0.65 16 25 H 0.03 0.81 8.01 -51.93 -0.42 0.39 16 26 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.04 0.96 7.67 -51.93 -0.40 0.56 16 28 H 0.06 0.87 7.99 -51.93 -0.41 0.46 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.33 3.16 9.06 -39.30 -0.36 2.80 16 35 H 0.34 4.00 8.42 -39.29 -0.33 3.67 16 36 H 0.05 1.03 7.56 -51.93 -0.39 0.64 16 37 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 LS Contribution 287.14 15.07 4.33 4.33 Total: -1.00 -30.33 287.14 -9.20 -39.53 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.46 Total: 1.73 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.52 Total: -13.05 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.52 Total: -49.54 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.33 -9.20 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252850976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.094 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds