Wall clock time and date at job start Mon Mar 30 2020 03:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48494 * 109.47338 * 239.99967 * 3 2 1 5 5 H 1.48499 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47189 * 120.00062 * 3 2 1 7 7 C 1.38815 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99973 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99862 * 0.28085 * 7 2 1 10 10 C 1.46495 * 119.99824 * 179.72173 * 9 7 2 11 11 H 1.08996 * 110.29123 * 325.69316 * 10 9 7 12 12 C 1.54257 * 110.32541 * 87.83015 * 10 9 7 13 13 C 1.54378 * 105.06204 * 118.89486 * 12 10 9 14 14 N 1.48553 * 104.59582 * 23.85027 * 13 12 10 15 15 C 1.46903 * 111.00133 * 200.95903 * 14 13 12 16 16 C 1.54265 * 110.03236 * 298.77882 * 15 14 13 17 17 C 1.54893 * 104.19640 * 217.10393 * 16 15 14 18 18 C 1.54896 * 102.74777 * 37.93958 * 17 16 15 19 19 C 1.53878 * 110.03436 * 181.60977 * 15 14 13 20 20 C 1.48720 * 104.29098 * 320.57302 * 14 13 12 21 21 H 0.97007 * 119.99733 * 359.97438 * 1 2 3 22 22 H 0.97007 * 119.99668 * 359.71884 * 9 7 2 23 23 H 1.09007 * 110.32123 * 237.79062 * 12 10 9 24 24 H 1.08999 * 110.32371 * 359.97438 * 12 10 9 25 25 H 1.09005 * 110.40937 * 142.63410 * 13 12 10 26 26 H 1.09004 * 110.41138 * 264.95217 * 13 12 10 27 27 H 1.09000 * 110.01617 * 60.21812 * 15 14 13 28 28 H 1.09003 * 110.48399 * 335.77823 * 16 15 14 29 29 H 1.08995 * 110.48927 * 98.42238 * 16 15 14 30 30 H 1.09005 * 110.75506 * 279.62814 * 17 16 15 31 31 H 1.08994 * 110.91546 * 156.32817 * 17 16 15 32 32 H 1.09001 * 110.48503 * 203.38238 * 18 17 16 33 33 H 1.08995 * 110.59689 * 80.79122 * 18 17 16 34 34 H 1.09001 * 110.02821 * 238.56990 * 19 15 14 35 35 H 1.08997 * 110.02902 * 0.02562 * 19 15 14 36 36 H 1.08992 * 110.38957 * 280.63947 * 20 14 13 37 37 H 1.08998 * 110.51049 * 158.14318 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 -0.0047 10 6 2.0580 -3.6567 -0.0103 11 1 2.9784 -3.5593 -0.5861 12 6 2.3733 -4.0998 1.4332 13 6 1.6554 -5.4559 1.6025 14 7 1.5144 -5.9800 0.2196 15 6 0.4464 -6.9859 0.1442 16 6 0.7812 -8.1817 1.0596 17 6 0.2724 -9.4157 0.2738 18 6 0.6240 -9.0568 -1.1914 19 6 0.3465 -7.5424 -1.2869 20 6 1.1769 -4.7820 -0.5944 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3880 -0.0047 23 1 3.4485 -4.2214 1.5656 24 1 1.9835 -3.3730 2.1459 25 1 2.2597 -6.1332 2.2060 26 1 0.6757 -5.3131 2.0586 27 1 -0.5047 -6.5432 0.4400 28 1 1.8571 -8.2492 1.2207 29 1 0.2569 -8.0924 2.0109 30 1 -0.8045 -9.5336 0.3948 31 1 0.7959 -10.3191 0.5865 32 1 -0.0151 -9.6061 -1.8826 33 1 1.6740 -9.2658 -1.3959 34 1 -0.6534 -7.3704 -1.6853 35 1 1.0907 -7.0663 -1.9254 36 1 0.1213 -4.5337 -0.4851 37 1 1.4221 -4.9512 -1.6428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259124470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:35 Heat of formation + Delta-G solvation = -13.438679 kcal Electronic energy + Delta-G solvation = -15751.988170 eV Core-core repulsion = 13334.866359 eV Total energy + Delta-G solvation = -2417.121811 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.50250 -38.05551 -35.69789 -33.12722 -31.07676 -29.99690 -28.74303 -27.30825 -25.30781 -22.76102 -21.82382 -20.66399 -20.50959 -19.21406 -17.53443 -17.06169 -16.38509 -16.10212 -15.42003 -15.29226 -14.62812 -14.42866 -14.14005 -13.71471 -13.36849 -13.10286 -13.06137 -12.60216 -12.33795 -12.19440 -12.08045 -11.91618 -11.80216 -11.79314 -11.69243 -11.59269 -11.41429 -11.34683 -10.94136 -9.45651 -9.03726 -7.95809 -5.25197 1.46993 1.50152 1.56218 2.54629 2.99863 3.36560 3.61999 3.77723 3.80118 4.01486 4.13397 4.17479 4.31523 4.40172 4.49657 4.61024 4.63215 4.68330 4.73772 4.82885 4.85372 4.98980 5.01292 5.08632 5.11865 5.21365 5.23299 5.28928 5.35997 5.43686 5.50767 5.52748 5.88684 6.20816 6.26971 7.31585 8.06204 8.30052 9.27681 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.063134 B = 0.005403 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.396792 B = 5180.658274 C = 5337.524481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.733 5.733 10 C 0.166 3.834 11 H 0.051 0.949 12 C -0.140 4.140 13 C 0.045 3.955 14 N -0.500 5.500 15 C 0.062 3.938 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.119 4.119 20 C 0.041 3.959 21 H 0.251 0.749 22 H 0.370 0.630 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.095 0.905 26 H 0.031 0.969 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 -18.493 0.709 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.374 5.374 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.181 4.181 13 C -0.083 4.083 14 N -0.224 5.224 15 C -0.046 4.046 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.088 4.088 21 H 0.060 0.940 22 H 0.202 0.798 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.113 0.887 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.360 -18.640 0.503 18.795 hybrid contribution -0.967 1.781 0.296 2.048 sum 1.393 -16.858 0.799 16.934 Atomic orbital electron populations 1.69820 1.06701 1.26152 1.59577 1.25565 0.96347 1.01107 1.03645 0.85200 0.77189 0.79070 0.78240 1.20321 1.22171 1.20357 1.19604 0.91460 0.85166 1.41167 0.90627 1.42655 1.05193 1.00889 1.88617 1.21126 0.94221 0.84677 0.94267 0.93080 1.22960 1.00403 0.95923 0.98808 1.22977 0.98880 0.95534 0.90860 1.65605 1.40979 1.08760 1.07050 1.22626 0.91576 0.93157 0.97287 1.22399 1.01864 0.93302 0.97493 1.22455 1.01176 0.97304 0.94622 1.22291 1.01735 0.94093 0.97197 1.22195 1.01320 0.97039 0.95164 1.23198 0.97093 0.89965 0.98533 0.94019 0.79759 0.91146 0.93160 0.88716 0.95088 0.95366 0.90721 0.91647 0.91161 0.90060 0.90644 0.91434 0.91961 0.91833 0.95247 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 3 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.24 -13.70 9.96 84.03 0.84 -12.86 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.73 -38.14 5.08 -318.71 -1.62 -39.76 16 10 C 0.17 6.93 3.70 45.89 0.17 7.10 16 11 H 0.05 2.18 8.10 -2.39 -0.02 2.16 16 12 C -0.14 -5.16 6.79 31.49 0.21 -4.95 16 13 C 0.05 1.39 5.77 86.45 0.50 1.89 16 14 N -0.50 -15.10 5.07 -851.68 -4.32 -19.42 16 15 C 0.06 1.61 2.43 45.64 0.11 1.72 16 16 C -0.11 -2.31 5.63 31.67 0.18 -2.14 16 17 C -0.12 -1.93 6.91 31.89 0.22 -1.71 16 18 C -0.12 -2.05 6.83 31.67 0.22 -1.83 16 19 C -0.12 -2.73 6.14 31.32 0.19 -2.54 16 20 C 0.04 1.46 5.54 86.42 0.48 1.94 16 21 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 22 H 0.37 20.74 7.56 -92.70 -0.70 20.04 16 23 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 24 H 0.05 2.10 7.95 -2.39 -0.02 2.08 16 25 H 0.09 2.45 7.94 -2.38 -0.02 2.43 16 26 H 0.03 0.99 7.99 -2.39 -0.02 0.97 16 27 H 0.03 0.81 8.01 -2.39 -0.02 0.79 16 28 H 0.07 1.58 7.94 -2.39 -0.02 1.56 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.61 7.04 -2.39 -0.02 1.59 16 36 H 0.03 1.14 7.52 -2.39 -0.02 1.12 16 37 H 0.08 2.80 7.51 -2.39 -0.02 2.78 16 Total: -1.00 -62.38 289.95 0.28 -62.11 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.32 Total: 25.75 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 3.58 Total: -17.25 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -5.66 Total: -119.21 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -62.38 0.28 -62.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259124470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.668 kcal (2) G-P(sol) polarization free energy of solvation -62.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds