Wall clock time and date at job start Mon Mar 30 2020 03:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47043 * 84.44552 * 3 2 1 5 5 H 1.48503 * 109.46756 * 204.43819 * 3 2 1 6 6 H 1.48494 * 109.47373 * 324.44380 * 3 2 1 7 7 C 1.37881 * 119.99556 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99769 * 16.16911 * 7 2 1 9 9 C 1.50696 * 119.99670 * 196.16534 * 7 2 1 10 10 C 1.52996 * 110.29978 * 272.60307 * 9 7 2 11 11 N 1.46903 * 109.47303 * 294.47376 * 10 9 7 12 12 C 1.55324 * 110.33791 * 34.76456 * 9 7 2 13 13 C 1.53926 * 102.08663 * 96.68533 * 12 9 7 14 14 H 1.09007 * 111.00793 * 280.62912 * 13 12 9 15 15 C 1.52367 * 113.26322 * 155.06121 * 13 12 9 16 16 C 1.53626 * 107.60847 * 185.08793 * 15 13 12 17 17 C 1.52827 * 110.61508 * 56.40730 * 16 15 13 18 18 C 1.53643 * 110.64054 * 306.13314 * 17 16 15 19 19 N 1.45523 * 107.85644 * 57.13356 * 18 17 16 20 20 C 1.46337 * 117.23129 * 174.42623 * 19 18 17 21 21 H 0.97003 * 119.99399 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47324 * 54.46794 * 10 9 7 23 23 H 1.09006 * 109.47414 * 174.47100 * 10 9 7 24 24 H 1.00894 * 111.00113 * 61.35022 * 11 10 9 25 25 H 1.00903 * 111.00299 * 185.31474 * 11 10 9 26 26 H 1.09002 * 110.90654 * 214.87835 * 12 9 7 27 27 H 1.09001 * 110.90864 * 338.49015 * 12 9 7 28 28 H 1.09002 * 109.83012 * 304.61433 * 15 13 12 29 29 H 1.09005 * 109.83322 * 65.49154 * 15 13 12 30 30 H 1.08995 * 109.25089 * 176.69716 * 16 15 13 31 31 H 1.08994 * 109.24993 * 296.11972 * 16 15 13 32 32 H 1.08997 * 109.24535 * 66.42968 * 17 16 15 33 33 H 1.08996 * 109.24570 * 185.87418 * 17 16 15 34 34 H 1.08996 * 109.78202 * 176.71968 * 18 17 16 35 35 H 1.08995 * 109.78122 * 297.48877 * 18 17 16 36 36 H 1.09000 * 110.14907 * 32.83235 * 20 19 18 37 37 H 1.09001 * 110.14970 * 271.08398 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3793 2.1141 1.3935 5 1 3.6006 1.4089 -0.5793 6 1 1.5104 2.6159 -0.8141 7 6 2.0045 -1.1941 0.0005 8 1 1.4965 -2.1110 -0.2595 9 6 3.4668 -1.2198 0.3639 10 6 4.3264 -0.9654 -0.8759 11 7 4.1625 -2.0772 -1.8220 12 6 3.7699 -0.1595 1.4577 13 6 3.7199 -1.0015 2.7454 14 1 2.6904 -1.1779 3.0572 15 6 4.5397 -0.4082 3.8845 16 6 4.5047 -1.4068 5.0514 17 6 5.0172 -2.7754 4.6040 18 6 4.2464 -3.2649 3.3683 19 7 4.3906 -2.2601 2.3256 20 6 3.8371 -2.5776 1.0086 21 1 -0.4849 0.8401 0.0004 22 1 4.0133 -0.0354 -1.3506 23 1 5.3735 -0.8892 -0.5828 24 1 3.2036 -2.1549 -2.1261 25 1 4.7847 -1.9764 -2.6099 26 1 4.7595 0.2746 1.3150 27 1 3.0043 0.6163 1.4703 28 1 5.5688 -0.2557 3.5590 29 1 4.1061 0.5419 4.1964 30 1 5.1325 -1.0353 5.8613 31 1 3.4798 -1.5063 5.4086 32 1 6.0768 -2.7000 4.3598 33 1 4.8856 -3.4911 5.4155 34 1 4.6611 -4.2132 3.0267 35 1 3.1927 -3.3912 3.6169 36 1 2.9472 -3.1980 1.1150 37 1 4.5830 -3.0907 0.4016 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259764208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:34 Heat of formation + Delta-G solvation = 12.454049 kcal Electronic energy + Delta-G solvation = -16829.819897 eV Core-core repulsion = 14413.820879 eV Total energy + Delta-G solvation = -2415.999018 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.43055 -35.93749 -32.70844 -32.34182 -31.49650 -28.87415 -26.63661 -24.61658 -23.62839 -21.99656 -21.02499 -19.45141 -18.60860 -15.99636 -15.70222 -15.06851 -14.80408 -14.32455 -14.03157 -13.74168 -13.50837 -12.86175 -12.81319 -12.39359 -12.03969 -11.88756 -11.72772 -11.39750 -10.89646 -10.62766 -10.38259 -10.29280 -10.07040 -9.89789 -9.80715 -9.48099 -9.11065 -9.04054 -8.40903 -7.66941 -7.52103 -6.14708 -4.08783 3.20860 3.34768 3.37922 4.34268 4.70091 5.12798 5.14356 5.20111 5.27078 5.52145 5.65805 5.83255 5.85518 5.98767 6.01134 6.06048 6.19694 6.23228 6.25140 6.35570 6.41492 6.47066 6.54717 6.62479 6.64523 6.71731 6.89402 6.99464 7.20509 7.30678 7.60739 7.85326 8.05801 8.10328 8.35199 8.54023 8.93141 9.50880 10.97237 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.011895 C = 0.010136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.715906 B = 2353.345749 C = 2761.685223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.070 3.930 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.252 1.252 6 H -0.306 1.306 7 C -0.508 4.508 8 H 0.074 0.926 9 C 0.047 3.953 10 C 0.071 3.929 11 N -0.844 5.844 12 C -0.126 4.126 13 C 0.078 3.922 14 H 0.056 0.944 15 C -0.107 4.107 16 C -0.117 4.117 17 C -0.111 4.111 18 C 0.060 3.940 19 N -0.540 5.540 20 C 0.077 3.923 21 H 0.263 0.737 22 H 0.024 0.976 23 H 0.043 0.957 24 H 0.348 0.652 25 H 0.319 0.681 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.032 0.968 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 -1.646 5.369 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.132 4.132 3 Si 0.716 3.284 4 H -0.213 1.213 5 H -0.177 1.177 6 H -0.235 1.235 7 C -0.546 4.546 8 H 0.092 0.908 9 C 0.046 3.954 10 C -0.060 4.060 11 N -0.373 5.373 12 C -0.164 4.164 13 C -0.030 4.030 14 H 0.073 0.927 15 C -0.145 4.145 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.069 4.069 19 N -0.265 5.265 20 C -0.050 4.050 21 H 0.073 0.927 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.161 0.839 25 H 0.129 0.871 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.637 -2.009 5.917 11.485 hybrid contribution -0.906 1.548 -0.534 1.872 sum 8.731 -0.461 5.383 10.267 Atomic orbital electron populations 1.69985 1.06453 1.26963 1.49388 1.25098 0.94552 0.99096 0.94442 0.87171 0.81030 0.83583 0.76613 1.21264 1.17702 1.23511 1.20869 0.91426 0.95159 1.47114 0.90758 1.19504 0.95480 0.90424 0.90025 1.22208 0.97587 0.91272 0.94960 1.58710 1.11751 1.47573 1.19249 1.22887 0.99523 0.98194 0.95767 1.22337 0.95594 0.90775 0.94312 0.92652 1.21554 1.00721 0.97341 0.94914 1.21547 1.00698 0.95588 0.97676 1.21564 1.00473 0.96262 0.96569 1.21859 0.97891 0.95175 0.91955 1.62865 1.56622 1.04297 1.02684 1.22517 0.96869 0.98193 0.87413 0.92742 0.95751 0.93883 0.83880 0.87133 0.92738 0.91710 0.91378 0.92331 0.92626 0.92659 0.91679 0.92503 0.91587 0.95386 0.94945 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 2 C 0.07 1.95 5.28 -17.82 -0.09 1.85 16 3 Si 0.88 21.45 23.37 -169.99 -3.97 17.48 16 4 H -0.28 -6.81 6.60 56.52 0.37 -6.43 16 5 H -0.25 -5.74 4.86 56.52 0.27 -5.46 16 6 H -0.31 -7.61 7.11 56.52 0.40 -7.21 16 7 C -0.51 -13.60 7.72 -34.44 -0.27 -13.86 16 8 H 0.07 2.20 7.96 -52.49 -0.42 1.78 16 9 C 0.05 1.08 0.41 -153.48 -0.06 1.02 16 10 C 0.07 1.49 5.24 -3.82 -0.02 1.47 16 11 N -0.84 -15.96 8.74 -10.37 -0.09 -16.05 16 12 C -0.13 -2.78 3.92 -25.02 -0.10 -2.88 16 13 C 0.08 1.57 2.62 -66.57 -0.17 1.39 16 14 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 15 C -0.11 -1.78 5.67 -26.73 -0.15 -1.93 16 16 C -0.12 -1.67 5.94 -26.49 -0.16 -1.83 16 17 C -0.11 -1.55 6.06 -26.49 -0.16 -1.71 16 18 C 0.06 1.00 5.85 -4.23 -0.02 0.97 16 19 N -0.54 -10.46 4.65 -225.05 -1.05 -11.51 16 20 C 0.08 1.66 5.90 -3.18 -0.02 1.64 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.54 5.19 -51.93 -0.27 0.27 16 23 H 0.04 0.87 8.05 -51.93 -0.42 0.45 16 24 H 0.35 6.94 8.28 -39.30 -0.33 6.61 16 25 H 0.32 5.07 9.08 -39.29 -0.36 4.71 16 26 H 0.05 1.13 7.78 -51.93 -0.40 0.73 16 27 H 0.07 1.55 2.37 -51.93 -0.12 1.43 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 36 H 0.03 0.75 7.54 -51.93 -0.39 0.36 16 37 H 0.07 1.55 7.25 -51.93 -0.38 1.18 16 LS Contribution 268.84 15.07 4.05 4.05 Total: -1.00 -28.45 268.84 -7.68 -36.13 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.17 Total: 9.53 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.23 Total: -13.87 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.36 Total: -53.33 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -3.97 Total: 17.48 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.45 -7.68 -36.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.589 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds