Wall clock time and date at job start Mon Mar 30 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.44811 * 2 1 4 4 C 1.53071 * 109.34676 * 240.14262 * 2 1 3 5 5 C 1.53241 * 109.30755 * 296.99627 * 4 2 1 6 6 H 1.09003 * 109.57680 * 183.53804 * 5 4 2 7 7 C 1.50708 * 109.57663 * 63.28745 * 5 4 2 8 8 H 1.08000 * 119.99673 * 240.25891 * 7 5 4 9 9 C 1.37876 * 119.99704 * 60.25373 * 7 5 4 10 10 N 1.31508 * 120.00387 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 119.99658 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47263 * 90.00194 * 11 9 7 13 13 H 1.48501 * 109.47224 * 209.99773 * 11 9 7 14 14 H 1.48497 * 109.47177 * 329.99942 * 11 9 7 15 15 C 1.53071 * 108.95482 * 303.41495 * 5 4 2 16 16 H 1.09000 * 109.49564 * 297.46091 * 15 5 4 17 17 C 1.52914 * 109.90824 * 177.14221 * 15 5 4 18 18 C 1.53063 * 109.27394 * 179.90382 * 17 15 5 19 19 C 1.52972 * 109.63039 * 59.83241 * 18 17 15 20 20 C 1.53065 * 109.64048 * 300.40213 * 19 18 17 21 21 C 1.52905 * 109.36175 * 59.76519 * 20 19 18 22 22 H 1.09003 * 109.34343 * 59.48427 * 21 20 19 23 23 O 1.42778 * 110.15449 * 179.59349 * 21 20 19 24 24 H 1.08991 * 109.47792 * 314.78782 * 1 2 3 25 25 H 1.09007 * 109.47220 * 74.78949 * 1 2 3 26 26 H 1.08997 * 109.46905 * 194.78353 * 1 2 3 27 27 H 1.08997 * 109.40308 * 177.10847 * 4 2 1 28 28 H 1.09006 * 109.60714 * 57.00669 * 4 2 1 29 29 H 0.97002 * 120.00242 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.50567 * 299.84478 * 17 15 5 31 31 H 1.09000 * 109.49996 * 59.96852 * 17 15 5 32 32 H 1.09001 * 109.44892 * 179.88189 * 18 17 15 33 33 H 1.08999 * 109.44721 * 299.81762 * 18 17 15 34 34 H 1.08998 * 109.44192 * 60.45715 * 19 18 17 35 35 H 1.08998 * 109.43975 * 180.34873 * 19 18 17 36 36 H 1.08995 * 109.49879 * 179.75445 * 20 19 18 37 37 H 1.08997 * 109.50188 * 299.83005 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0370 -0.7190 -1.2526 5 6 1.5855 -2.1829 -1.2143 6 1 1.9968 -2.7146 -2.0723 7 6 0.0803 -2.2482 -1.2540 8 1 -0.4619 -2.7067 -0.4402 9 6 -0.6043 -1.7226 -2.3291 10 7 0.0560 -1.1647 -3.3202 11 14 -2.4699 -1.8030 -2.3780 12 1 -3.0347 -0.5862 -1.7409 13 1 -2.9253 -1.8794 -3.7894 14 1 -2.9330 -3.0071 -1.6426 15 6 2.0927 -2.8260 0.0789 16 1 3.1827 -2.8166 0.0866 17 6 1.5941 -4.2685 0.1735 18 6 2.1112 -4.8978 1.4693 19 6 1.6001 -4.0978 2.6688 20 6 2.0898 -2.6511 2.5686 21 6 1.5665 -2.0272 1.2744 22 1 0.4768 -2.0529 1.2761 23 8 2.0060 -0.6730 1.1683 24 1 -0.3634 0.7239 0.7293 25 1 -0.3634 0.2696 -0.9917 26 1 -0.3633 -0.9936 0.2622 27 1 3.1258 -0.6748 -1.2797 28 1 1.6306 -0.2361 -2.1413 29 1 -0.4257 -0.7952 -4.0767 30 1 0.5042 -4.2774 0.1742 31 1 1.9628 -4.8376 -0.6799 32 1 1.7556 -5.9257 1.5407 33 1 3.2011 -4.8904 1.4667 34 1 0.5103 -4.1123 2.6768 35 1 1.9751 -4.5449 3.5894 36 1 1.7208 -2.0822 3.4220 37 1 3.1796 -2.6352 2.5645 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259792847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:48 Heat of formation + Delta-G solvation = -67.085546 kcal Electronic energy + Delta-G solvation = -17230.093439 eV Core-core repulsion = 14778.352574 eV Total energy + Delta-G solvation = -2451.740865 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.60846 -36.05101 -34.10430 -31.30895 -30.31782 -29.24338 -26.91337 -25.61278 -22.33617 -22.07002 -20.68144 -19.33497 -18.50954 -15.94674 -15.29607 -15.25505 -14.61388 -14.13128 -13.86390 -13.31800 -12.93889 -12.65438 -12.39626 -11.89530 -11.64773 -11.26492 -11.12883 -10.97741 -10.77641 -10.70619 -10.51635 -10.39992 -10.27732 -10.05147 -9.80779 -9.60411 -9.20004 -8.87762 -8.81368 -8.29381 -7.92167 -6.00388 -3.96804 3.26892 3.34924 3.37181 4.40755 4.62889 5.26480 5.27970 5.34984 5.54914 5.85563 5.88451 6.04814 6.10502 6.12626 6.18237 6.27274 6.30242 6.32425 6.42383 6.50861 6.63937 6.64277 6.82891 6.93860 6.96440 6.98503 7.06876 7.16431 7.25701 7.48438 7.66192 7.72298 7.84970 8.02788 8.36653 8.44756 8.94351 9.57131 11.05481 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.028960 B = 0.012222 C = 0.010686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.625005 B = 2290.472959 C = 2619.716529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 H 0.070 0.930 4 C -0.140 4.140 5 C 0.050 3.950 6 H 0.028 0.972 7 C -0.495 4.495 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.888 5.888 11 Si 0.875 3.125 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.103 4.103 16 H 0.046 0.954 17 C -0.103 4.103 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.111 4.111 21 C 0.100 3.900 22 H 0.065 0.935 23 O -0.395 6.395 24 H 0.013 0.987 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.021 0.979 28 H 0.100 0.900 29 H 0.259 0.741 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 -2.791 7.544 8.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.046 3.954 3 H 0.088 0.912 4 C -0.178 4.178 5 C 0.031 3.969 6 H 0.046 0.954 7 C -0.533 4.533 8 H 0.076 0.924 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.703 3.297 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.122 4.122 16 H 0.065 0.935 17 C -0.141 4.141 18 C -0.159 4.159 19 C -0.150 4.150 20 C -0.149 4.149 21 C 0.043 3.957 22 H 0.083 0.917 23 O -0.315 6.315 24 H 0.032 0.968 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.040 0.960 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.265 -2.617 7.496 8.257 hybrid contribution -1.182 -0.009 -0.423 1.255 sum 1.083 -2.625 7.074 7.622 Atomic orbital electron populations 1.22737 0.96187 1.02771 1.01005 1.21949 0.94219 0.93900 0.85333 0.91184 1.22190 0.96486 1.00431 0.98688 1.18723 0.95543 0.91336 0.91267 0.95431 1.21019 0.91165 1.36801 1.04306 0.92389 1.24853 0.97425 0.95664 0.95783 1.69852 1.34859 1.39263 1.08748 0.86863 0.86957 0.78594 0.77292 1.20501 1.21331 1.19922 1.21685 0.98137 0.94502 0.97830 0.93516 1.21465 1.01731 0.95592 0.95302 1.21626 1.00196 0.98281 0.95846 1.21448 1.00832 0.94941 0.97759 1.21499 1.00893 0.95160 0.97353 1.21892 0.98451 0.81959 0.93422 0.91739 1.87727 1.74689 1.24561 1.44514 0.96792 0.91340 0.88765 0.96030 0.88158 0.93071 0.91005 0.92660 0.92854 0.92749 0.92077 0.92538 0.92327 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 7.73 37.15 0.29 -3.50 16 2 C 0.10 2.26 3.90 -26.70 -0.10 2.16 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 4 C -0.14 -3.31 5.12 -26.57 -0.14 -3.44 16 5 C 0.05 1.19 2.19 -91.61 -0.20 0.99 16 6 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.49 -12.34 4.10 -34.44 -0.14 -12.48 16 8 H 0.06 1.45 5.25 -52.49 -0.28 1.17 16 9 C 0.06 1.64 3.53 -17.82 -0.06 1.57 16 10 N -0.89 -24.09 11.33 55.43 0.63 -23.46 16 11 Si 0.88 20.39 29.51 -169.99 -5.02 15.38 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 C -0.10 -2.12 1.91 -90.57 -0.17 -2.29 16 16 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.10 -1.91 4.95 -26.74 -0.13 -2.04 16 18 C -0.12 -1.84 5.92 -26.71 -0.16 -2.00 16 19 C -0.11 -1.63 5.92 -26.71 -0.16 -1.78 16 20 C -0.11 -1.84 5.61 -26.75 -0.15 -1.99 16 21 C 0.10 2.00 2.10 -26.72 -0.06 1.94 16 22 H 0.06 1.38 5.11 -51.93 -0.27 1.11 16 23 O -0.39 -8.56 10.28 -35.23 -0.36 -8.92 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 1.64 6.45 -51.92 -0.34 1.30 16 26 H 0.09 2.18 3.32 -51.93 -0.17 2.01 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.10 2.59 6.00 -51.93 -0.31 2.28 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.07 1.42 6.50 -51.93 -0.34 1.08 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 264.06 15.07 3.98 3.98 Total: -1.00 -26.13 264.06 -7.86 -33.99 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.91 Total: 1.89 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -1.19 Total: -22.86 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.63 Total: -23.46 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.36 Total: -8.92 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.13 -7.86 -33.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.091 kcal (2) G-P(sol) polarization free energy of solvation -26.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds