Wall clock time and date at job start Mon Mar 30 2020 03:03:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09000 * 109.44811 * 2 1
4 4 C 1.53071 * 109.34676 * 240.14262 * 2 1 3
5 5 C 1.53241 * 109.30755 * 296.99627 * 4 2 1
6 6 H 1.09003 * 109.57680 * 183.53804 * 5 4 2
7 7 C 1.50708 * 109.57663 * 63.28745 * 5 4 2
8 8 H 1.08000 * 119.99673 * 240.25891 * 7 5 4
9 9 C 1.37876 * 119.99704 * 60.25373 * 7 5 4
10 10 N 1.31508 * 120.00387 * 0.02562 * 9 7 5
11 11 Si 1.86798 * 119.99658 * 180.02562 * 9 7 5
12 12 H 1.48506 * 109.47263 * 90.00194 * 11 9 7
13 13 H 1.48501 * 109.47224 * 209.99773 * 11 9 7
14 14 H 1.48497 * 109.47177 * 329.99942 * 11 9 7
15 15 C 1.53071 * 108.95482 * 303.41495 * 5 4 2
16 16 H 1.09000 * 109.49564 * 297.46091 * 15 5 4
17 17 C 1.52914 * 109.90824 * 177.14221 * 15 5 4
18 18 C 1.53063 * 109.27394 * 179.90382 * 17 15 5
19 19 C 1.52972 * 109.63039 * 59.83241 * 18 17 15
20 20 C 1.53065 * 109.64048 * 300.40213 * 19 18 17
21 21 C 1.52905 * 109.36175 * 59.76519 * 20 19 18
22 22 H 1.09003 * 109.34343 * 59.48427 * 21 20 19
23 23 O 1.42778 * 110.15449 * 179.59349 * 21 20 19
24 24 H 1.08991 * 109.47792 * 314.78782 * 1 2 3
25 25 H 1.09007 * 109.47220 * 74.78949 * 1 2 3
26 26 H 1.08997 * 109.46905 * 194.78353 * 1 2 3
27 27 H 1.08997 * 109.40308 * 177.10847 * 4 2 1
28 28 H 1.09006 * 109.60714 * 57.00669 * 4 2 1
29 29 H 0.97002 * 120.00242 * 179.97438 * 10 9 7
30 30 H 1.08996 * 109.50567 * 299.84478 * 17 15 5
31 31 H 1.09000 * 109.49996 * 59.96852 * 17 15 5
32 32 H 1.09001 * 109.44892 * 179.88189 * 18 17 15
33 33 H 1.08999 * 109.44721 * 299.81762 * 18 17 15
34 34 H 1.08998 * 109.44192 * 60.45715 * 19 18 17
35 35 H 1.08998 * 109.43975 * 180.34873 * 19 18 17
36 36 H 1.08995 * 109.49879 * 179.75445 * 20 19 18
37 37 H 1.08997 * 109.50188 * 299.83005 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8929 1.0278 0.0000
4 6 2.0370 -0.7190 -1.2526
5 6 1.5855 -2.1829 -1.2143
6 1 1.9968 -2.7146 -2.0723
7 6 0.0803 -2.2482 -1.2540
8 1 -0.4619 -2.7067 -0.4402
9 6 -0.6043 -1.7226 -2.3291
10 7 0.0560 -1.1647 -3.3202
11 14 -2.4699 -1.8030 -2.3780
12 1 -3.0347 -0.5862 -1.7409
13 1 -2.9253 -1.8794 -3.7894
14 1 -2.9330 -3.0071 -1.6426
15 6 2.0927 -2.8260 0.0789
16 1 3.1827 -2.8166 0.0866
17 6 1.5941 -4.2685 0.1735
18 6 2.1112 -4.8978 1.4693
19 6 1.6001 -4.0978 2.6688
20 6 2.0898 -2.6511 2.5686
21 6 1.5665 -2.0272 1.2744
22 1 0.4768 -2.0529 1.2761
23 8 2.0060 -0.6730 1.1683
24 1 -0.3634 0.7239 0.7293
25 1 -0.3634 0.2696 -0.9917
26 1 -0.3633 -0.9936 0.2622
27 1 3.1258 -0.6748 -1.2797
28 1 1.6306 -0.2361 -2.1413
29 1 -0.4257 -0.7952 -4.0767
30 1 0.5042 -4.2774 0.1742
31 1 1.9628 -4.8376 -0.6799
32 1 1.7556 -5.9257 1.5407
33 1 3.2011 -4.8904 1.4667
34 1 0.5103 -4.1123 2.6768
35 1 1.9751 -4.5449 3.5894
36 1 1.7208 -2.0822 3.4220
37 1 3.1796 -2.6352 2.5645
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259792847.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:48
Heat of formation + Delta-G solvation = -80.695021 kcal
Electronic energy + Delta-G solvation = -17230.683590 eV
Core-core repulsion = 14778.352574 eV
Total energy + Delta-G solvation = -2452.331016 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.152 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.28190 -37.52776 -35.95275 -33.16839 -31.94056 -30.70159 -28.66517 -27.55374
-23.96156 -23.57560 -22.38111 -20.77086 -20.29375 -17.87039 -17.03731 -16.87501
-16.44694 -15.72707 -15.36355 -14.82297 -14.65218 -14.21453 -14.09335 -13.55920
-13.28379 -13.02755 -12.88640 -12.60872 -12.43512 -12.36065 -12.22404 -12.01235
-11.88217 -11.69903 -11.47359 -11.20003 -10.93961 -10.70615 -10.49887 -10.20505
-9.75105 -8.01627 -6.01732 1.39706 1.44050 1.49243 2.45890 3.04223
3.26545 3.93677 4.05352 4.19336 4.32715 4.43866 4.46601 4.54474
4.59219 4.62521 4.74109 4.79317 4.81429 5.00089 5.13145 5.15647
5.19850 5.25284 5.27537 5.32904 5.37887 5.47023 5.48549 5.61766
5.66370 5.73139 5.85042 5.92726 6.06999 6.43135 6.65934 6.94555
7.54238 9.04128
Molecular weight = 224.15amu
Principal moments of inertia in cm(-1)
A = 0.028960 B = 0.012222 C = 0.010686
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 966.625005 B = 2290.472959 C = 2619.716529
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.105 3.895
3 H 0.086 0.914
4 C -0.137 4.137
5 C 0.046 3.954
6 H -0.010 1.010
7 C -0.486 4.486
8 H 0.059 0.941
9 C 0.024 3.976
10 N -0.917 5.917
11 Si 0.923 3.077
12 H -0.275 1.275
13 H -0.292 1.292
14 H -0.268 1.268
15 C -0.099 4.099
16 H 0.043 0.957
17 C -0.101 4.101
18 C -0.116 4.116
19 C -0.108 4.108
20 C -0.107 4.107
21 C 0.098 3.902
22 H 0.051 0.949
23 O -0.398 6.398
24 H 0.034 0.966
25 H 0.046 0.954
26 H 0.084 0.916
27 H 0.021 0.979
28 H 0.075 0.925
29 H 0.256 0.744
30 H 0.056 0.944
31 H 0.046 0.954
32 H 0.075 0.925
33 H 0.062 0.938
34 H 0.060 0.940
35 H 0.089 0.911
36 H 0.071 0.929
37 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.996 -3.533 9.793 10.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.048 3.952
3 H 0.104 0.896
4 C -0.175 4.175
5 C 0.027 3.973
6 H 0.008 0.992
7 C -0.524 4.524
8 H 0.077 0.923
9 C -0.174 4.174
10 N -0.557 5.557
11 Si 0.750 3.250
12 H -0.201 1.201
13 H -0.218 1.218
14 H -0.192 1.192
15 C -0.118 4.118
16 H 0.062 0.938
17 C -0.138 4.138
18 C -0.153 4.153
19 C -0.146 4.146
20 C -0.144 4.144
21 C 0.040 3.960
22 H 0.069 0.931
23 O -0.318 6.318
24 H 0.053 0.947
25 H 0.065 0.935
26 H 0.103 0.897
27 H 0.040 0.960
28 H 0.093 0.907
29 H 0.066 0.934
30 H 0.075 0.925
31 H 0.065 0.935
32 H 0.093 0.907
33 H 0.081 0.919
34 H 0.079 0.921
35 H 0.107 0.893
36 H 0.089 0.911
37 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 2.074 -3.369 9.762 10.533
hybrid contribution -1.085 0.219 -1.157 1.601
sum 0.989 -3.150 8.605 9.217
Atomic orbital electron populations
1.22587 0.96297 1.02742 1.00263 1.21903 0.94088 0.94543 0.84707
0.89599 1.22094 0.96333 1.00320 0.98802 1.18704 0.95218 0.91528
0.91842 0.99180 1.21125 0.91595 1.35756 1.03896 0.92306 1.25400
1.00581 0.95697 0.95687 1.69980 1.36034 1.40437 1.09297 0.86089
0.83180 0.78805 0.76917 1.20061 1.21834 1.19207 1.21615 0.97812
0.95946 0.96429 0.93829 1.21410 1.00709 0.94313 0.97413 1.21585
1.00664 0.99219 0.93857 1.21466 1.00885 0.93437 0.98775 1.21518
1.01119 0.96382 0.95427 1.22042 0.97810 0.81155 0.94952 0.93084
1.87733 1.74702 1.25504 1.43842 0.94665 0.93468 0.89725 0.96018
0.90675 0.93416 0.92519 0.93540 0.90661 0.91913 0.92133 0.89253
0.91058 0.91687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -7.09 7.73 71.98 0.56 -6.53 16
2 C 0.10 4.54 3.90 30.62 0.12 4.66 16
3 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16
4 C -0.14 -6.61 5.12 30.70 0.16 -6.46 16
5 C 0.05 2.23 2.19 -11.43 -0.03 2.20 16
6 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16
7 C -0.49 -24.48 4.10 25.60 0.10 -24.38 16
8 H 0.06 2.93 5.25 -2.91 -0.02 2.91 16
9 C 0.02 1.27 3.53 84.66 0.30 1.56 16
10 N -0.92 -51.10 11.33 21.45 0.24 -50.86 16
11 Si 0.92 41.94 29.51 68.60 2.02 43.96 16
12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16
13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16
14 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
15 C -0.10 -4.05 1.91 -10.76 -0.02 -4.07 16
16 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16
17 C -0.10 -3.62 4.95 30.59 0.15 -3.47 16
18 C -0.12 -3.12 5.92 30.61 0.18 -2.94 16
19 C -0.11 -2.71 5.92 30.61 0.18 -2.53 16
20 C -0.11 -3.19 5.61 30.58 0.17 -3.01 16
21 C 0.10 3.74 2.10 30.60 0.06 3.81 16
22 H 0.05 2.11 5.11 -2.39 -0.01 2.10 16
23 O -0.40 -16.62 10.28 -148.98 -1.53 -18.15 16
24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16
25 H 0.05 2.25 6.45 -2.38 -0.02 2.24 16
26 H 0.08 3.86 3.32 -2.39 -0.01 3.85 16
27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16
28 H 0.07 4.02 6.00 -2.38 -0.01 4.00 16
29 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16
30 H 0.06 2.19 6.50 -2.39 -0.02 2.17 16
31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16
32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
34 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16
35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
Total: -1.00 -55.89 264.06 3.71 -52.18
By element:
Atomic # 1 Polarization: 12.99 SS G_CDS: 1.04 Total: 14.03 kcal
Atomic # 6 Polarization: -43.10 SS G_CDS: 1.94 Total: -41.16 kcal
Atomic # 7 Polarization: -51.10 SS G_CDS: 0.24 Total: -50.86 kcal
Atomic # 8 Polarization: -16.62 SS G_CDS: -1.53 Total: -18.15 kcal
Atomic # 14 Polarization: 41.94 SS G_CDS: 2.02 Total: 43.96 kcal
Total: -55.89 3.71 -52.18 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259792847.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.517 kcal
(2) G-P(sol) polarization free energy of solvation -55.890 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.408 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.178 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds