Wall clock time and date at job start Mon Mar 30 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.44811 * 2 1 4 4 C 1.53071 * 109.34676 * 240.14262 * 2 1 3 5 5 C 1.53241 * 109.30755 * 296.99627 * 4 2 1 6 6 H 1.09003 * 109.57680 * 183.53804 * 5 4 2 7 7 C 1.50708 * 109.57663 * 63.28745 * 5 4 2 8 8 H 1.08000 * 119.99673 * 240.25891 * 7 5 4 9 9 C 1.37876 * 119.99704 * 60.25373 * 7 5 4 10 10 N 1.31508 * 120.00387 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 119.99658 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47263 * 90.00194 * 11 9 7 13 13 H 1.48501 * 109.47224 * 209.99773 * 11 9 7 14 14 H 1.48497 * 109.47177 * 329.99942 * 11 9 7 15 15 C 1.53071 * 108.95482 * 303.41495 * 5 4 2 16 16 H 1.09000 * 109.49564 * 297.46091 * 15 5 4 17 17 C 1.52914 * 109.90824 * 177.14221 * 15 5 4 18 18 C 1.53063 * 109.27394 * 179.90382 * 17 15 5 19 19 C 1.52972 * 109.63039 * 59.83241 * 18 17 15 20 20 C 1.53065 * 109.64048 * 300.40213 * 19 18 17 21 21 C 1.52905 * 109.36175 * 59.76519 * 20 19 18 22 22 H 1.09003 * 109.34343 * 59.48427 * 21 20 19 23 23 O 1.42778 * 110.15449 * 179.59349 * 21 20 19 24 24 H 1.08991 * 109.47792 * 314.78782 * 1 2 3 25 25 H 1.09007 * 109.47220 * 74.78949 * 1 2 3 26 26 H 1.08997 * 109.46905 * 194.78353 * 1 2 3 27 27 H 1.08997 * 109.40308 * 177.10847 * 4 2 1 28 28 H 1.09006 * 109.60714 * 57.00669 * 4 2 1 29 29 H 0.97002 * 120.00242 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.50567 * 299.84478 * 17 15 5 31 31 H 1.09000 * 109.49996 * 59.96852 * 17 15 5 32 32 H 1.09001 * 109.44892 * 179.88189 * 18 17 15 33 33 H 1.08999 * 109.44721 * 299.81762 * 18 17 15 34 34 H 1.08998 * 109.44192 * 60.45715 * 19 18 17 35 35 H 1.08998 * 109.43975 * 180.34873 * 19 18 17 36 36 H 1.08995 * 109.49879 * 179.75445 * 20 19 18 37 37 H 1.08997 * 109.50188 * 299.83005 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0370 -0.7190 -1.2526 5 6 1.5855 -2.1829 -1.2143 6 1 1.9968 -2.7146 -2.0723 7 6 0.0803 -2.2482 -1.2540 8 1 -0.4619 -2.7067 -0.4402 9 6 -0.6043 -1.7226 -2.3291 10 7 0.0560 -1.1647 -3.3202 11 14 -2.4699 -1.8030 -2.3780 12 1 -3.0347 -0.5862 -1.7409 13 1 -2.9253 -1.8794 -3.7894 14 1 -2.9330 -3.0071 -1.6426 15 6 2.0927 -2.8260 0.0789 16 1 3.1827 -2.8166 0.0866 17 6 1.5941 -4.2685 0.1735 18 6 2.1112 -4.8978 1.4693 19 6 1.6001 -4.0978 2.6688 20 6 2.0898 -2.6511 2.5686 21 6 1.5665 -2.0272 1.2744 22 1 0.4768 -2.0529 1.2761 23 8 2.0060 -0.6730 1.1683 24 1 -0.3634 0.7239 0.7293 25 1 -0.3634 0.2696 -0.9917 26 1 -0.3633 -0.9936 0.2622 27 1 3.1258 -0.6748 -1.2797 28 1 1.6306 -0.2361 -2.1413 29 1 -0.4257 -0.7952 -4.0767 30 1 0.5042 -4.2774 0.1742 31 1 1.9628 -4.8376 -0.6799 32 1 1.7556 -5.9257 1.5407 33 1 3.2011 -4.8904 1.4667 34 1 0.5103 -4.1123 2.6768 35 1 1.9751 -4.5449 3.5894 36 1 1.7208 -2.0822 3.4220 37 1 3.1796 -2.6352 2.5645 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259792847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:48 Heat of formation + Delta-G solvation = -80.695021 kcal Electronic energy + Delta-G solvation = -17230.683590 eV Core-core repulsion = 14778.352574 eV Total energy + Delta-G solvation = -2452.331016 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.28190 -37.52776 -35.95275 -33.16839 -31.94056 -30.70159 -28.66517 -27.55374 -23.96156 -23.57560 -22.38111 -20.77086 -20.29375 -17.87039 -17.03731 -16.87501 -16.44694 -15.72707 -15.36355 -14.82297 -14.65218 -14.21453 -14.09335 -13.55920 -13.28379 -13.02755 -12.88640 -12.60872 -12.43512 -12.36065 -12.22404 -12.01235 -11.88217 -11.69903 -11.47359 -11.20003 -10.93961 -10.70615 -10.49887 -10.20505 -9.75105 -8.01627 -6.01732 1.39706 1.44050 1.49243 2.45890 3.04223 3.26545 3.93677 4.05352 4.19336 4.32715 4.43866 4.46601 4.54474 4.59219 4.62521 4.74109 4.79317 4.81429 5.00089 5.13145 5.15647 5.19850 5.25284 5.27537 5.32904 5.37887 5.47023 5.48549 5.61766 5.66370 5.73139 5.85042 5.92726 6.06999 6.43135 6.65934 6.94555 7.54238 9.04128 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.028960 B = 0.012222 C = 0.010686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.625005 B = 2290.472959 C = 2619.716529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.105 3.895 3 H 0.086 0.914 4 C -0.137 4.137 5 C 0.046 3.954 6 H -0.010 1.010 7 C -0.486 4.486 8 H 0.059 0.941 9 C 0.024 3.976 10 N -0.917 5.917 11 Si 0.923 3.077 12 H -0.275 1.275 13 H -0.292 1.292 14 H -0.268 1.268 15 C -0.099 4.099 16 H 0.043 0.957 17 C -0.101 4.101 18 C -0.116 4.116 19 C -0.108 4.108 20 C -0.107 4.107 21 C 0.098 3.902 22 H 0.051 0.949 23 O -0.398 6.398 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.021 0.979 28 H 0.075 0.925 29 H 0.256 0.744 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -3.533 9.793 10.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.104 0.896 4 C -0.175 4.175 5 C 0.027 3.973 6 H 0.008 0.992 7 C -0.524 4.524 8 H 0.077 0.923 9 C -0.174 4.174 10 N -0.557 5.557 11 Si 0.750 3.250 12 H -0.201 1.201 13 H -0.218 1.218 14 H -0.192 1.192 15 C -0.118 4.118 16 H 0.062 0.938 17 C -0.138 4.138 18 C -0.153 4.153 19 C -0.146 4.146 20 C -0.144 4.144 21 C 0.040 3.960 22 H 0.069 0.931 23 O -0.318 6.318 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.074 -3.369 9.762 10.533 hybrid contribution -1.085 0.219 -1.157 1.601 sum 0.989 -3.150 8.605 9.217 Atomic orbital electron populations 1.22587 0.96297 1.02742 1.00263 1.21903 0.94088 0.94543 0.84707 0.89599 1.22094 0.96333 1.00320 0.98802 1.18704 0.95218 0.91528 0.91842 0.99180 1.21125 0.91595 1.35756 1.03896 0.92306 1.25400 1.00581 0.95697 0.95687 1.69980 1.36034 1.40437 1.09297 0.86089 0.83180 0.78805 0.76917 1.20061 1.21834 1.19207 1.21615 0.97812 0.95946 0.96429 0.93829 1.21410 1.00709 0.94313 0.97413 1.21585 1.00664 0.99219 0.93857 1.21466 1.00885 0.93437 0.98775 1.21518 1.01119 0.96382 0.95427 1.22042 0.97810 0.81155 0.94952 0.93084 1.87733 1.74702 1.25504 1.43842 0.94665 0.93468 0.89725 0.96018 0.90675 0.93416 0.92519 0.93540 0.90661 0.91913 0.92133 0.89253 0.91058 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.09 7.73 71.98 0.56 -6.53 16 2 C 0.10 4.54 3.90 30.62 0.12 4.66 16 3 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 4 C -0.14 -6.61 5.12 30.70 0.16 -6.46 16 5 C 0.05 2.23 2.19 -11.43 -0.03 2.20 16 6 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 7 C -0.49 -24.48 4.10 25.60 0.10 -24.38 16 8 H 0.06 2.93 5.25 -2.91 -0.02 2.91 16 9 C 0.02 1.27 3.53 84.66 0.30 1.56 16 10 N -0.92 -51.10 11.33 21.45 0.24 -50.86 16 11 Si 0.92 41.94 29.51 68.60 2.02 43.96 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 15 C -0.10 -4.05 1.91 -10.76 -0.02 -4.07 16 16 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 17 C -0.10 -3.62 4.95 30.59 0.15 -3.47 16 18 C -0.12 -3.12 5.92 30.61 0.18 -2.94 16 19 C -0.11 -2.71 5.92 30.61 0.18 -2.53 16 20 C -0.11 -3.19 5.61 30.58 0.17 -3.01 16 21 C 0.10 3.74 2.10 30.60 0.06 3.81 16 22 H 0.05 2.11 5.11 -2.39 -0.01 2.10 16 23 O -0.40 -16.62 10.28 -148.98 -1.53 -18.15 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 2.25 6.45 -2.38 -0.02 2.24 16 26 H 0.08 3.86 3.32 -2.39 -0.01 3.85 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 4.02 6.00 -2.38 -0.01 4.00 16 29 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.06 2.19 6.50 -2.39 -0.02 2.17 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -55.89 264.06 3.71 -52.18 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.04 Total: 14.03 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 1.94 Total: -41.16 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.24 Total: -50.86 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.53 Total: -18.15 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.02 Total: 43.96 kcal Total: -55.89 3.71 -52.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.517 kcal (2) G-P(sol) polarization free energy of solvation -55.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds