Wall clock time and date at job start Mon Mar 30 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46794 * 2 1 4 4 C 1.53075 * 109.46704 * 240.00535 * 2 1 3 5 5 C 1.53181 * 109.23493 * 182.58616 * 4 2 1 6 6 H 1.09000 * 109.56936 * 297.24019 * 5 4 2 7 7 C 1.50709 * 109.56725 * 176.89629 * 5 4 2 8 8 H 1.07996 * 119.99863 * 240.58140 * 7 5 4 9 9 C 1.37875 * 119.99884 * 60.57161 * 7 5 4 10 10 N 1.31518 * 120.00024 * 0.02562 * 9 7 5 11 11 Si 1.86794 * 119.99933 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47009 * 90.00337 * 11 9 7 13 13 H 1.48495 * 109.47304 * 210.00466 * 11 9 7 14 14 H 1.48499 * 109.47370 * 330.00652 * 11 9 7 15 15 C 1.53305 * 108.90885 * 57.07196 * 5 4 2 16 16 H 1.08998 * 109.62506 * 182.72386 * 15 5 4 17 17 C 1.53032 * 109.10079 * 62.11463 * 15 5 4 18 18 C 1.52974 * 109.57174 * 181.19128 * 17 15 5 19 19 C 1.52965 * 109.40294 * 60.19836 * 18 17 15 20 20 C 1.52996 * 109.40283 * 299.77242 * 19 18 17 21 21 C 1.52852 * 109.58167 * 59.95589 * 20 19 18 22 22 H 1.08999 * 109.38245 * 180.37799 * 21 20 19 23 23 O 1.42835 * 109.77875 * 60.69658 * 21 20 19 24 24 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46931 * 299.99141 * 1 2 3 26 26 H 1.08998 * 109.47063 * 59.99013 * 1 2 3 27 27 H 1.09001 * 109.51054 * 62.66083 * 4 2 1 28 28 H 1.09005 * 109.51229 * 302.51718 * 4 2 1 29 29 H 0.96997 * 120.00197 * 179.97438 * 10 9 7 30 30 H 1.09001 * 109.46077 * 301.22744 * 17 15 5 31 31 H 1.09009 * 109.45179 * 61.18846 * 17 15 5 32 32 H 1.08997 * 109.47781 * 180.18007 * 18 17 15 33 33 H 1.08996 * 109.47888 * 300.21258 * 18 17 15 34 34 H 1.09001 * 109.44956 * 179.81229 * 19 18 17 35 35 H 1.08991 * 109.49752 * 59.76454 * 19 18 17 36 36 H 1.09002 * 109.45148 * 299.92762 * 20 19 18 37 37 H 1.08997 * 109.44527 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0402 -0.7215 -1.2500 5 6 3.5706 -0.7752 -1.2124 6 1 3.9721 0.2379 -1.2370 7 6 4.0778 -1.5505 -2.4011 8 1 4.6569 -2.4498 -2.2520 9 6 3.8023 -1.1117 -3.6788 10 7 3.0974 -0.0164 -3.8603 11 14 4.4304 -2.0731 -5.1521 12 1 3.4199 -3.0863 -5.5493 13 1 4.6702 -1.1428 -6.2844 14 1 5.7002 -2.7545 -4.7938 15 6 4.0117 -1.4710 0.0805 16 1 5.0999 -1.4726 0.1424 17 6 3.4833 -2.9072 0.0815 18 6 3.8924 -3.6028 1.3811 19 6 3.3002 -2.8455 2.5710 20 6 3.8308 -1.4105 2.5752 21 6 3.4300 -0.7123 1.2758 22 1 3.8153 0.3073 1.2793 23 8 2.0063 -0.6737 1.1672 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.7166 -0.1813 -2.1397 28 1 1.6408 -1.7355 -1.2735 29 1 2.9039 0.2925 -4.7591 30 1 2.3962 -2.8943 0.0033 31 1 3.9020 -3.4487 -0.7669 32 1 3.5181 -4.6264 1.3789 33 1 4.9794 -3.6132 1.4612 34 1 3.5885 -3.3424 3.4973 35 1 2.2135 -2.8311 2.4886 36 1 4.9175 -1.4256 2.6588 37 1 3.4089 -0.8701 3.4225 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259792849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:51 Heat of formation + Delta-G solvation = -79.765961 kcal Electronic energy + Delta-G solvation = -16857.078625 eV Core-core repulsion = 14404.787896 eV Total energy + Delta-G solvation = -2452.290729 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.55519 -35.62468 -34.13635 -31.60626 -30.94721 -29.26350 -26.97353 -25.18419 -22.63453 -21.82306 -20.91446 -19.89367 -17.99479 -16.11995 -15.50924 -15.04843 -14.68778 -14.32230 -13.93467 -13.16022 -12.93757 -12.83720 -12.22927 -12.20817 -11.65758 -11.55188 -11.52596 -11.09467 -10.91554 -10.76214 -10.59701 -10.37687 -10.21641 -10.11812 -9.93689 -9.54682 -9.34076 -9.01793 -8.77259 -8.33329 -8.09592 -5.97540 -4.02609 3.30337 3.37381 3.40334 4.43985 4.44897 5.29890 5.31793 5.35880 5.44030 5.74951 5.86985 5.91029 5.94247 6.02394 6.06204 6.15938 6.18108 6.22618 6.33170 6.36707 6.50236 6.58855 6.63242 6.68236 6.75402 6.84822 6.99243 7.11085 7.15493 7.28377 7.49008 7.70634 7.98880 8.01374 8.24151 8.46457 8.99822 9.61435 11.08399 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.029019 B = 0.010643 C = 0.008601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.645508 B = 2630.311281 C = 3254.574540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 H 0.042 0.958 4 C -0.134 4.134 5 C 0.052 3.948 6 H 0.022 0.978 7 C -0.505 4.505 8 H 0.057 0.943 9 C 0.060 3.940 10 N -0.892 5.892 11 Si 0.888 3.112 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.275 1.275 15 C -0.104 4.104 16 H 0.059 0.941 17 C -0.098 4.098 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.107 4.107 21 C 0.097 3.903 22 H 0.042 0.958 23 O -0.384 6.384 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.259 0.741 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -2.168 9.093 9.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.024 3.976 3 H 0.060 0.940 4 C -0.172 4.172 5 C 0.034 3.966 6 H 0.040 0.960 7 C -0.543 4.543 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.716 3.284 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.123 4.123 16 H 0.077 0.923 17 C -0.136 4.136 18 C -0.158 4.158 19 C -0.149 4.149 20 C -0.145 4.145 21 C 0.039 3.961 22 H 0.060 0.940 23 O -0.305 6.305 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.449 -2.134 9.078 9.437 hybrid contribution 0.515 -0.288 -1.144 1.287 sum -0.934 -2.422 7.934 8.348 Atomic orbital electron populations 1.21707 0.94773 1.01911 1.01028 1.22246 0.93482 0.94970 0.86892 0.93967 1.22262 0.99111 0.99461 0.96331 1.18749 0.91778 0.95481 0.90628 0.95977 1.21181 1.32929 1.09829 0.90375 0.92444 1.24967 0.95244 0.94978 0.98842 1.69879 1.39334 1.22371 1.21540 0.86659 0.79261 0.79845 0.82624 1.20782 1.21356 1.19993 1.21766 0.98762 0.95626 0.96141 0.92267 1.21432 1.01332 0.95328 0.95470 1.21602 0.99773 0.98292 0.96174 1.21404 1.01255 0.94924 0.97288 1.21485 1.00071 0.96326 0.96604 1.21953 0.81847 0.97308 0.94993 0.94000 1.87719 1.20546 1.78510 1.43696 0.92543 0.93353 0.91588 0.88788 0.93467 0.93125 0.91808 0.91597 0.93116 0.92964 0.93349 0.91457 0.91397 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.56 37.16 0.36 -1.99 16 2 C 0.08 1.64 3.27 -26.69 -0.09 1.56 16 3 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -3.13 4.05 -26.60 -0.11 -3.23 16 5 C 0.05 1.28 1.97 -91.52 -0.18 1.10 16 6 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 7 C -0.50 -13.55 7.83 -34.44 -0.27 -13.82 16 8 H 0.06 1.53 6.55 -52.49 -0.34 1.19 16 9 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 10 N -0.89 -25.17 11.40 55.43 0.63 -24.54 16 11 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 15 C -0.10 -2.17 2.10 -90.41 -0.19 -2.36 16 16 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.10 -1.93 4.46 -26.73 -0.12 -2.05 16 18 C -0.12 -1.94 5.92 -26.76 -0.16 -2.10 16 19 C -0.11 -1.68 5.79 -26.75 -0.15 -1.84 16 20 C -0.11 -1.67 5.66 -26.81 -0.15 -1.82 16 21 C 0.10 1.82 2.77 -26.77 -0.07 1.75 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 O -0.38 -7.64 8.83 -35.23 -0.31 -7.95 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.09 2.44 6.22 -51.93 -0.32 2.12 16 28 H 0.05 1.13 6.53 -51.93 -0.34 0.79 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.06 1.33 5.99 -51.93 -0.31 1.02 16 31 H 0.07 1.38 6.50 -51.92 -0.34 1.05 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.10 7.72 -51.93 -0.40 0.70 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 275.30 15.07 4.15 4.15 Total: -1.00 -27.51 275.30 -8.05 -35.55 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.26 Total: -0.13 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -1.23 Total: -23.26 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.63 Total: -24.54 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.31 Total: -7.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.51 -8.05 -35.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.211 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds