Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46794 * 2 1 4 4 C 1.53075 * 109.46704 * 240.00535 * 2 1 3 5 5 C 1.53181 * 109.23493 * 182.58616 * 4 2 1 6 6 H 1.09000 * 109.56936 * 297.24019 * 5 4 2 7 7 C 1.50709 * 109.56725 * 176.89629 * 5 4 2 8 8 H 1.07996 * 119.99863 * 240.58140 * 7 5 4 9 9 C 1.37875 * 119.99884 * 60.57161 * 7 5 4 10 10 N 1.31518 * 120.00024 * 0.02562 * 9 7 5 11 11 Si 1.86794 * 119.99933 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47009 * 90.00337 * 11 9 7 13 13 H 1.48495 * 109.47304 * 210.00466 * 11 9 7 14 14 H 1.48499 * 109.47370 * 330.00652 * 11 9 7 15 15 C 1.53305 * 108.90885 * 57.07196 * 5 4 2 16 16 H 1.08998 * 109.62506 * 182.72386 * 15 5 4 17 17 C 1.53032 * 109.10079 * 62.11463 * 15 5 4 18 18 C 1.52974 * 109.57174 * 181.19128 * 17 15 5 19 19 C 1.52965 * 109.40294 * 60.19836 * 18 17 15 20 20 C 1.52996 * 109.40283 * 299.77242 * 19 18 17 21 21 C 1.52852 * 109.58167 * 59.95589 * 20 19 18 22 22 H 1.08999 * 109.38245 * 180.37799 * 21 20 19 23 23 O 1.42835 * 109.77875 * 60.69658 * 21 20 19 24 24 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46931 * 299.99141 * 1 2 3 26 26 H 1.08998 * 109.47063 * 59.99013 * 1 2 3 27 27 H 1.09001 * 109.51054 * 62.66083 * 4 2 1 28 28 H 1.09005 * 109.51229 * 302.51718 * 4 2 1 29 29 H 0.96997 * 120.00197 * 179.97438 * 10 9 7 30 30 H 1.09001 * 109.46077 * 301.22744 * 17 15 5 31 31 H 1.09009 * 109.45179 * 61.18846 * 17 15 5 32 32 H 1.08997 * 109.47781 * 180.18007 * 18 17 15 33 33 H 1.08996 * 109.47888 * 300.21258 * 18 17 15 34 34 H 1.09001 * 109.44956 * 179.81229 * 19 18 17 35 35 H 1.08991 * 109.49752 * 59.76454 * 19 18 17 36 36 H 1.09002 * 109.45148 * 299.92762 * 20 19 18 37 37 H 1.08997 * 109.44527 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0402 -0.7215 -1.2500 5 6 3.5706 -0.7752 -1.2124 6 1 3.9721 0.2379 -1.2370 7 6 4.0778 -1.5505 -2.4011 8 1 4.6569 -2.4498 -2.2520 9 6 3.8023 -1.1117 -3.6788 10 7 3.0974 -0.0164 -3.8603 11 14 4.4304 -2.0731 -5.1521 12 1 3.4199 -3.0863 -5.5493 13 1 4.6702 -1.1428 -6.2844 14 1 5.7002 -2.7545 -4.7938 15 6 4.0117 -1.4710 0.0805 16 1 5.0999 -1.4726 0.1424 17 6 3.4833 -2.9072 0.0815 18 6 3.8924 -3.6028 1.3811 19 6 3.3002 -2.8455 2.5710 20 6 3.8308 -1.4105 2.5752 21 6 3.4300 -0.7123 1.2758 22 1 3.8153 0.3073 1.2793 23 8 2.0063 -0.6737 1.1672 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.7166 -0.1813 -2.1397 28 1 1.6408 -1.7355 -1.2735 29 1 2.9039 0.2925 -4.7591 30 1 2.3962 -2.8943 0.0033 31 1 3.9020 -3.4487 -0.7669 32 1 3.5181 -4.6264 1.3789 33 1 4.9794 -3.6132 1.4612 34 1 3.5885 -3.3424 3.4973 35 1 2.2135 -2.8311 2.4886 36 1 4.9175 -1.4256 2.6588 37 1 3.4089 -0.8701 3.4225 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259792849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = -94.248421 kcal Electronic energy + Delta-G solvation = -16857.706631 eV Core-core repulsion = 14404.787896 eV Total energy + Delta-G solvation = -2452.918735 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.16379 -37.08910 -36.01736 -33.47078 -32.51637 -30.70669 -28.63411 -27.12647 -24.28929 -23.28643 -22.58052 -21.42417 -19.63246 -18.19022 -17.12414 -16.78579 -16.35533 -15.93087 -15.47392 -14.86641 -14.50639 -14.29593 -14.02512 -13.66067 -13.23175 -13.10124 -12.96458 -12.87484 -12.60105 -12.43532 -12.24540 -12.08898 -11.93226 -11.69036 -11.53267 -11.24029 -11.04197 -10.76625 -10.55284 -10.31345 -9.87240 -8.07556 -6.19908 1.38900 1.40103 1.49485 2.42479 2.92792 3.18597 3.94639 3.98742 4.10358 4.17822 4.39169 4.43544 4.47518 4.48931 4.62165 4.73038 4.74518 4.83508 4.85729 4.96231 5.05568 5.10536 5.18756 5.22806 5.27109 5.38363 5.39874 5.45946 5.53744 5.55958 5.65920 5.75399 5.98687 6.07775 6.39353 6.55678 6.89423 7.46988 8.96755 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.029019 B = 0.010643 C = 0.008601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.645508 B = 2630.311281 C = 3254.574540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.084 3.916 3 H 0.034 0.966 4 C -0.121 4.121 5 C 0.046 3.954 6 H -0.015 1.015 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.011 3.989 10 N -0.919 5.919 11 Si 0.949 3.051 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.269 1.269 15 C -0.101 4.101 16 H 0.056 0.944 17 C -0.092 4.092 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.103 4.103 21 C 0.092 3.908 22 H 0.036 0.964 23 O -0.382 6.382 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.259 0.741 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 -3.245 10.727 11.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.026 3.974 3 H 0.052 0.948 4 C -0.159 4.159 5 C 0.028 3.972 6 H 0.003 0.997 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.187 4.187 10 N -0.559 5.559 11 Si 0.775 3.225 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.194 1.194 15 C -0.120 4.120 16 H 0.075 0.925 17 C -0.130 4.130 18 C -0.153 4.153 19 C -0.145 4.145 20 C -0.140 4.140 21 C 0.035 3.965 22 H 0.054 0.946 23 O -0.302 6.302 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.335 -3.218 10.724 11.276 hybrid contribution 0.512 0.075 -1.677 1.755 sum -0.823 -3.143 9.047 9.613 Atomic orbital electron populations 1.21662 0.92089 1.02515 1.02451 1.22177 0.95620 0.93945 0.85640 0.94751 1.22029 0.98285 0.98656 0.96972 1.18737 0.92529 0.93611 0.92338 0.99663 1.21500 1.32841 1.09865 0.91534 0.92723 1.25714 0.95559 0.95907 1.01499 1.70017 1.40257 1.23622 1.21969 0.85692 0.78883 0.78569 0.79347 1.20302 1.21093 1.19351 1.21683 0.98680 0.96446 0.95155 0.92540 1.21318 0.99920 0.94585 0.97155 1.21561 1.00595 0.98816 0.94316 1.21390 1.00376 0.94592 0.98099 1.21518 1.01294 0.96429 0.94773 1.22099 0.81196 0.97220 0.96013 0.94616 1.87736 1.21195 1.78303 1.42926 0.92329 0.90985 0.91130 0.91758 0.94572 0.93195 0.93514 0.93729 0.91514 0.91862 0.90050 0.92661 0.89670 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.56 71.98 0.69 -3.62 16 2 C 0.08 3.40 3.27 30.62 0.10 3.50 16 3 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.12 -5.86 4.05 30.68 0.12 -5.74 16 5 C 0.05 2.36 1.97 -11.37 -0.02 2.34 16 6 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 7 C -0.52 -28.68 7.83 25.60 0.20 -28.48 16 8 H 0.05 2.98 6.55 -2.91 -0.02 2.96 16 9 C 0.01 0.63 5.31 84.65 0.45 1.08 16 10 N -0.92 -53.46 11.40 21.45 0.24 -53.21 16 11 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 15 C -0.10 -4.22 2.10 -10.66 -0.02 -4.24 16 16 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 17 C -0.09 -3.59 4.46 30.60 0.14 -3.45 16 18 C -0.12 -3.41 5.92 30.57 0.18 -3.23 16 19 C -0.11 -2.85 5.79 30.58 0.18 -2.68 16 20 C -0.10 -2.87 5.66 30.54 0.17 -2.70 16 21 C 0.09 3.38 2.77 30.57 0.08 3.47 16 22 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 23 O -0.38 -14.76 8.83 -148.98 -1.32 -16.07 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 25 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.06 3.49 6.22 -2.39 -0.01 3.47 16 28 H 0.04 1.78 6.53 -2.38 -0.02 1.77 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.61 16 30 H 0.05 1.95 5.99 -2.39 -0.01 1.94 16 31 H 0.04 1.88 6.50 -2.38 -0.02 1.87 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.63 7.72 -2.39 -0.02 1.61 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -60.13 275.30 4.24 -55.88 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.02 Total: 11.04 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 2.27 Total: -43.76 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.24 Total: -53.21 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.32 Total: -16.07 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -60.13 4.24 -55.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.366 kcal (2) G-P(sol) polarization free energy of solvation -60.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds