Wall clock time and date at job start Mon Mar 30 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.45862 * 2 1 4 4 C 1.53085 * 109.46202 * 240.02610 * 2 1 3 5 5 C 1.53218 * 109.19827 * 182.57303 * 4 2 1 6 6 H 1.09003 * 109.55766 * 296.80101 * 5 4 2 7 7 C 1.50697 * 109.55873 * 176.58827 * 5 4 2 8 8 H 1.08003 * 119.99518 * 245.35809 * 7 5 4 9 9 C 1.37875 * 120.00379 * 65.35225 * 7 5 4 10 10 N 1.31513 * 120.00409 * 187.07709 * 9 7 5 11 11 Si 1.86801 * 119.99832 * 6.80170 * 9 7 5 12 12 H 1.48498 * 109.47372 * 270.27450 * 11 9 7 13 13 H 1.48501 * 109.46985 * 30.27316 * 11 9 7 14 14 H 1.48493 * 109.47104 * 150.27182 * 11 9 7 15 15 C 1.53093 * 108.95101 * 56.74465 * 5 4 2 16 16 H 1.08994 * 109.40195 * 62.49007 * 15 5 4 17 17 C 1.52807 * 109.76125 * 182.28768 * 15 5 4 18 18 C 1.52981 * 109.67663 * 60.71477 * 17 15 5 19 19 C 1.53024 * 109.36578 * 59.88339 * 18 17 15 20 20 C 1.52987 * 109.67295 * 299.87678 * 19 18 17 21 21 C 1.53026 * 109.57805 * 59.72755 * 20 19 18 22 22 H 1.09003 * 109.57042 * 61.37153 * 21 20 19 23 23 O 1.42907 * 109.46639 * 119.97590 * 2 1 3 24 24 H 1.08994 * 109.47124 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46730 * 299.97639 * 1 2 3 26 26 H 1.08993 * 109.47015 * 59.97422 * 1 2 3 27 27 H 1.08999 * 109.52023 * 62.65818 * 4 2 1 28 28 H 1.08998 * 109.51827 * 302.48790 * 4 2 1 29 29 H 0.97000 * 119.99713 * 354.63099 * 10 9 7 30 30 H 1.09005 * 109.43771 * 180.77400 * 17 15 5 31 31 H 1.09001 * 109.43754 * 300.65136 * 17 15 5 32 32 H 1.09004 * 109.48731 * 179.85352 * 18 17 15 33 33 H 1.09000 * 109.48960 * 299.91312 * 18 17 15 34 34 H 1.08998 * 109.48547 * 59.66751 * 19 18 17 35 35 H 1.08995 * 109.48804 * 179.72111 * 19 18 17 36 36 H 1.08993 * 109.15318 * 299.87709 * 20 19 18 37 37 H 1.09003 * 109.75722 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2503 5 6 3.5708 -0.7741 -1.2122 6 1 3.9719 0.2389 -1.2442 7 6 4.0782 -1.5553 -2.3968 8 1 4.5907 -2.4938 -2.2452 9 6 3.8882 -1.0720 -3.6740 10 7 4.2045 -1.8149 -4.7121 11 14 3.1742 0.6350 -3.9300 12 1 1.6937 0.5464 -4.0042 13 1 3.5614 1.5091 -2.7936 14 1 3.6998 1.2067 -5.1956 15 6 4.0124 -1.4617 0.0824 16 1 3.6448 -2.4877 0.0910 17 6 5.5381 -1.4738 0.1665 18 6 6.0652 -0.0377 0.1713 19 6 5.4926 0.7090 1.3780 20 6 3.9652 0.7306 1.2930 21 6 3.4321 -0.7037 1.2786 22 1 3.7155 -1.2079 2.2026 23 8 2.0062 -0.6732 1.1671 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5135 0.8902 26 1 -0.3633 0.5142 -0.8897 27 1 1.7165 -0.1807 -2.1399 28 1 1.6411 -1.7352 -1.2741 29 1 4.6430 -2.6701 -4.5808 30 1 5.8469 -1.9765 1.0831 31 1 5.9446 -2.0065 -0.6932 32 1 7.1533 -0.0499 0.2339 33 1 5.7591 0.4650 -0.7462 34 1 5.7933 0.2025 2.2951 35 1 5.8708 1.7312 1.3861 36 1 3.6652 1.2386 0.3766 37 1 3.5559 1.2618 2.1523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259792851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:53 Heat of formation + Delta-G solvation = -77.600322 kcal Electronic energy + Delta-G solvation = -17066.715011 eV Core-core repulsion = 14614.518192 eV Total energy + Delta-G solvation = -2452.196820 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.99123 -36.03045 -33.97476 -31.86700 -31.08070 -29.48171 -27.59691 -24.79486 -22.54609 -22.19862 -20.94015 -20.19471 -17.68466 -17.23681 -16.15604 -15.07586 -14.83953 -14.25710 -13.87676 -13.58281 -13.28715 -12.69589 -12.54477 -12.04834 -12.01195 -11.81659 -11.51844 -11.44980 -11.22433 -10.95155 -10.74147 -10.48460 -10.29083 -10.07357 -9.72561 -9.66822 -9.55485 -8.99680 -8.85750 -8.44553 -8.23637 -6.37708 -4.02822 3.34927 3.41001 3.56351 4.29553 4.48778 5.12572 5.21938 5.26883 5.39943 5.51849 5.61068 5.70128 5.80955 5.82310 5.84780 5.93768 6.01910 6.08050 6.10045 6.23563 6.24616 6.38523 6.43922 6.48355 6.57348 6.59686 6.69627 6.85505 6.89902 7.02072 7.14704 7.21800 7.59548 7.85079 8.17303 8.40927 8.93435 9.65899 11.00760 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.014451 C = 0.010896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.089268 B = 1937.100355 C = 2569.250142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 H 0.051 0.949 4 C -0.147 4.147 5 C 0.019 3.981 6 H 0.033 0.967 7 C -0.579 4.579 8 H 0.056 0.944 9 C 0.026 3.974 10 N -0.918 5.918 11 Si 1.050 2.950 12 H -0.284 1.284 13 H -0.280 1.280 14 H -0.291 1.291 15 C -0.096 4.096 16 H 0.063 0.937 17 C -0.099 4.099 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.150 4.150 21 C 0.096 3.904 22 H 0.087 0.913 23 O -0.382 6.382 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.266 0.734 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 5.354 10.962 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.020 3.980 3 H 0.069 0.931 4 C -0.185 4.185 5 C 0.000 4.000 6 H 0.051 0.949 7 C -0.617 4.617 8 H 0.075 0.925 9 C -0.178 4.178 10 N -0.553 5.553 11 Si 0.881 3.119 12 H -0.211 1.211 13 H -0.206 1.206 14 H -0.218 1.218 15 C -0.115 4.115 16 H 0.082 0.918 17 C -0.137 4.137 18 C -0.158 4.158 19 C -0.149 4.149 20 C -0.188 4.188 21 C 0.038 3.962 22 H 0.105 0.895 23 O -0.302 6.302 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.038 6.329 9.924 11.945 hybrid contribution 0.651 -1.055 0.904 1.535 sum -1.386 5.274 10.828 12.123 Atomic orbital electron populations 1.21762 0.94363 1.02445 1.01392 1.22205 0.93837 0.95338 0.86667 0.93127 1.22635 1.00262 1.00402 0.95218 1.19274 0.90401 0.96876 0.93436 0.94916 1.22031 1.40354 1.08013 0.91317 0.92544 1.25700 0.96050 1.03746 0.92304 1.70805 1.39166 1.13219 1.32152 0.83900 0.76448 0.76053 0.75520 1.21126 1.20584 1.21782 1.21519 0.94966 0.99497 0.95475 0.91814 1.21313 0.95518 0.96178 1.00660 1.21549 0.98798 0.96869 0.98578 1.21434 0.94944 0.99874 0.98648 1.22165 0.96251 0.98197 1.02186 1.22227 0.80473 0.94872 0.98604 0.89519 1.87878 1.20976 1.78126 1.43220 0.92098 0.92764 0.91579 0.92590 0.91809 0.92393 0.94032 0.90830 0.92950 0.90770 0.92641 0.92548 0.91009 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.56 37.16 0.36 -1.86 16 2 C 0.08 1.43 2.93 -26.69 -0.08 1.35 16 3 H 0.05 0.92 6.27 -51.93 -0.33 0.59 16 4 C -0.15 -3.21 4.31 -26.57 -0.11 -3.32 16 5 C 0.02 0.44 0.69 -91.61 -0.06 0.37 16 6 H 0.03 0.77 3.44 -51.93 -0.18 0.59 16 7 C -0.58 -15.77 8.11 -34.44 -0.28 -16.05 16 8 H 0.06 1.66 7.32 -52.48 -0.38 1.28 16 9 C 0.03 0.73 5.42 -17.82 -0.10 0.63 16 10 N -0.92 -28.18 13.69 55.43 0.76 -27.42 16 11 Si 1.05 25.47 25.39 -169.99 -4.32 21.15 16 12 H -0.28 -6.57 6.76 56.52 0.38 -6.19 16 13 H -0.28 -6.28 6.37 56.52 0.36 -5.92 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 C -0.10 -1.94 2.05 -90.65 -0.19 -2.12 16 16 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 17 C -0.10 -1.84 5.23 -26.84 -0.14 -1.98 16 18 C -0.12 -2.05 5.66 -26.73 -0.15 -2.20 16 19 C -0.11 -1.64 5.91 -26.73 -0.16 -1.80 16 20 C -0.15 -2.43 4.71 -26.72 -0.13 -2.55 16 21 C 0.10 1.70 3.23 -26.70 -0.09 1.62 16 22 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 23 O -0.38 -7.27 10.24 -35.23 -0.36 -7.63 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.25 4.50 -51.93 -0.23 1.02 16 28 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.27 8.14 8.72 -40.82 -0.36 7.79 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.53 6.89 -51.93 -0.36 1.17 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.44 6.45 -51.93 -0.33 1.10 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.27 4.93 -51.93 -0.26 1.02 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 265.45 15.07 4.00 4.00 Total: -1.00 -29.05 265.45 -6.97 -36.03 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.93 Total: 1.78 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -1.12 Total: -27.91 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.76 Total: -27.42 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.36 Total: -7.63 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -4.32 Total: 21.15 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.05 -6.97 -36.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.573 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds