Wall clock time and date at job start Mon Mar 30 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.45862 * 2 1 4 4 C 1.53085 * 109.46202 * 240.02610 * 2 1 3 5 5 C 1.53218 * 109.19827 * 182.57303 * 4 2 1 6 6 H 1.09003 * 109.55766 * 296.80101 * 5 4 2 7 7 C 1.50697 * 109.55873 * 176.58827 * 5 4 2 8 8 H 1.08003 * 119.99518 * 245.35809 * 7 5 4 9 9 C 1.37875 * 120.00379 * 65.35225 * 7 5 4 10 10 N 1.31513 * 120.00409 * 187.07709 * 9 7 5 11 11 Si 1.86801 * 119.99832 * 6.80170 * 9 7 5 12 12 H 1.48498 * 109.47372 * 270.27450 * 11 9 7 13 13 H 1.48501 * 109.46985 * 30.27316 * 11 9 7 14 14 H 1.48493 * 109.47104 * 150.27182 * 11 9 7 15 15 C 1.53093 * 108.95101 * 56.74465 * 5 4 2 16 16 H 1.08994 * 109.40195 * 62.49007 * 15 5 4 17 17 C 1.52807 * 109.76125 * 182.28768 * 15 5 4 18 18 C 1.52981 * 109.67663 * 60.71477 * 17 15 5 19 19 C 1.53024 * 109.36578 * 59.88339 * 18 17 15 20 20 C 1.52987 * 109.67295 * 299.87678 * 19 18 17 21 21 C 1.53026 * 109.57805 * 59.72755 * 20 19 18 22 22 H 1.09003 * 109.57042 * 61.37153 * 21 20 19 23 23 O 1.42907 * 109.46639 * 119.97590 * 2 1 3 24 24 H 1.08994 * 109.47124 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46730 * 299.97639 * 1 2 3 26 26 H 1.08993 * 109.47015 * 59.97422 * 1 2 3 27 27 H 1.08999 * 109.52023 * 62.65818 * 4 2 1 28 28 H 1.08998 * 109.51827 * 302.48790 * 4 2 1 29 29 H 0.97000 * 119.99713 * 354.63099 * 10 9 7 30 30 H 1.09005 * 109.43771 * 180.77400 * 17 15 5 31 31 H 1.09001 * 109.43754 * 300.65136 * 17 15 5 32 32 H 1.09004 * 109.48731 * 179.85352 * 18 17 15 33 33 H 1.09000 * 109.48960 * 299.91312 * 18 17 15 34 34 H 1.08998 * 109.48547 * 59.66751 * 19 18 17 35 35 H 1.08995 * 109.48804 * 179.72111 * 19 18 17 36 36 H 1.08993 * 109.15318 * 299.87709 * 20 19 18 37 37 H 1.09003 * 109.75722 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2503 5 6 3.5708 -0.7741 -1.2122 6 1 3.9719 0.2389 -1.2442 7 6 4.0782 -1.5553 -2.3968 8 1 4.5907 -2.4938 -2.2452 9 6 3.8882 -1.0720 -3.6740 10 7 4.2045 -1.8149 -4.7121 11 14 3.1742 0.6350 -3.9300 12 1 1.6937 0.5464 -4.0042 13 1 3.5614 1.5091 -2.7936 14 1 3.6998 1.2067 -5.1956 15 6 4.0124 -1.4617 0.0824 16 1 3.6448 -2.4877 0.0910 17 6 5.5381 -1.4738 0.1665 18 6 6.0652 -0.0377 0.1713 19 6 5.4926 0.7090 1.3780 20 6 3.9652 0.7306 1.2930 21 6 3.4321 -0.7037 1.2786 22 1 3.7155 -1.2079 2.2026 23 8 2.0062 -0.6732 1.1671 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5135 0.8902 26 1 -0.3633 0.5142 -0.8897 27 1 1.7165 -0.1807 -2.1399 28 1 1.6411 -1.7352 -1.2741 29 1 4.6430 -2.6701 -4.5808 30 1 5.8469 -1.9765 1.0831 31 1 5.9446 -2.0065 -0.6932 32 1 7.1533 -0.0499 0.2339 33 1 5.7591 0.4650 -0.7462 34 1 5.7933 0.2025 2.2951 35 1 5.8708 1.7312 1.3861 36 1 3.6652 1.2386 0.3766 37 1 3.5559 1.2618 2.1523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259792851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:53 Heat of formation + Delta-G solvation = -95.636008 kcal Electronic energy + Delta-G solvation = -17067.497097 eV Core-core repulsion = 14614.518192 eV Total energy + Delta-G solvation = -2452.978906 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.50392 -37.44948 -35.83675 -33.71684 -32.59202 -30.91233 -29.11659 -26.66919 -23.97365 -23.73321 -22.50946 -21.77312 -19.74629 -18.85324 -17.59110 -16.64627 -16.35119 -15.85363 -15.51082 -15.32350 -14.64619 -14.29761 -13.93348 -13.83501 -13.42889 -13.30155 -13.15502 -12.96648 -12.77787 -12.43253 -12.31463 -12.07405 -11.81178 -11.63948 -11.47439 -11.25948 -11.11272 -10.71096 -10.58078 -10.55707 -10.00025 -8.67272 -6.33027 1.37667 1.47720 1.64292 2.46114 2.90459 3.10833 3.76821 3.87683 4.02238 4.09157 4.20921 4.28411 4.34261 4.39065 4.46644 4.55247 4.63249 4.69149 4.75752 4.84574 4.88682 4.99976 5.03643 5.10753 5.16552 5.25309 5.25587 5.29480 5.40084 5.47042 5.51419 5.62594 5.79100 6.05445 6.13853 6.40114 6.60620 7.44491 8.69186 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.014451 C = 0.010896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.089268 B = 1937.100355 C = 2569.250142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.065 0.935 4 C -0.148 4.148 5 C 0.020 3.980 6 H 0.037 0.963 7 C -0.573 4.573 8 H 0.015 0.985 9 C -0.029 4.029 10 N -0.954 5.954 11 Si 1.084 2.916 12 H -0.264 1.264 13 H -0.249 1.249 14 H -0.294 1.294 15 C -0.098 4.098 16 H 0.035 0.965 17 C -0.098 4.098 18 C -0.119 4.119 19 C -0.104 4.104 20 C -0.147 4.147 21 C 0.097 3.903 22 H 0.110 0.890 23 O -0.389 6.389 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.249 0.751 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 7.936 13.641 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.022 3.978 3 H 0.082 0.918 4 C -0.186 4.186 5 C 0.001 3.999 6 H 0.055 0.945 7 C -0.611 4.611 8 H 0.033 0.967 9 C -0.225 4.225 10 N -0.591 5.591 11 Si 0.906 3.094 12 H -0.189 1.189 13 H -0.173 1.173 14 H -0.221 1.221 15 C -0.117 4.117 16 H 0.053 0.947 17 C -0.135 4.135 18 C -0.157 4.157 19 C -0.142 4.142 20 C -0.185 4.185 21 C 0.039 3.961 22 H 0.127 0.873 23 O -0.308 6.308 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.763 8.897 12.636 15.699 hybrid contribution 0.948 -2.000 0.085 2.214 sum -1.815 6.898 12.721 14.584 Atomic orbital electron populations 1.21776 0.91949 1.02738 1.03245 1.22235 0.95785 0.95158 0.84611 0.91757 1.22556 0.98978 0.99706 0.97360 1.19204 0.91426 0.96344 0.92899 0.94471 1.22259 1.38806 1.06624 0.93390 0.96652 1.27112 0.96238 1.06816 0.92287 1.70940 1.41703 1.13237 1.33262 0.83531 0.77129 0.72292 0.76405 1.18927 1.17295 1.22096 1.21493 0.96281 0.98115 0.95771 0.94653 1.21271 0.94314 0.97640 1.00298 1.21528 1.00086 0.95326 0.98745 1.21417 0.93746 1.01028 0.97996 1.22155 0.97274 0.96522 1.02510 1.22320 0.79922 0.96105 0.97726 0.87257 1.87887 1.21605 1.78352 1.42992 0.92657 0.90408 0.90258 0.93055 0.94083 0.94238 0.91258 0.94722 0.91137 0.93753 0.90293 0.90307 0.92674 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.56 71.98 0.69 -3.22 16 2 C 0.08 2.74 2.93 30.62 0.09 2.83 16 3 H 0.06 2.08 6.27 -2.38 -0.01 2.06 16 4 C -0.15 -6.35 4.31 30.70 0.13 -6.22 16 5 C 0.02 0.92 0.69 -11.44 -0.01 0.91 16 6 H 0.04 1.71 3.44 -2.39 -0.01 1.70 16 7 C -0.57 -32.64 8.11 25.60 0.21 -32.43 16 8 H 0.02 0.97 7.32 -2.91 -0.02 0.94 16 9 C -0.03 -1.69 5.42 84.65 0.46 -1.23 16 10 N -0.95 -61.26 13.69 21.45 0.29 -60.97 16 11 Si 1.08 51.00 25.39 68.60 1.74 52.74 16 12 H -0.26 -11.49 6.76 99.48 0.67 -10.82 16 13 H -0.25 -10.37 6.37 99.48 0.63 -9.73 16 14 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 15 C -0.10 -3.93 2.05 -10.81 -0.02 -3.95 16 16 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 17 C -0.10 -3.59 5.23 30.52 0.16 -3.43 16 18 C -0.12 -3.82 5.66 30.60 0.17 -3.64 16 19 C -0.10 -2.61 5.91 30.60 0.18 -2.42 16 20 C -0.15 -4.12 4.71 30.60 0.14 -3.97 16 21 C 0.10 3.15 3.23 30.62 0.10 3.25 16 22 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 23 O -0.39 -13.66 10.24 -148.98 -1.53 -15.19 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 2.22 4.50 -2.39 -0.01 2.21 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.25 16.27 8.72 -92.71 -0.81 15.46 16 30 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.03 1.50 6.89 -2.39 -0.02 1.49 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.04 1.67 6.45 -2.39 -0.02 1.65 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.74 4.93 -2.39 -0.01 1.73 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -65.94 265.45 3.71 -62.24 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.89 Total: 14.70 kcal Atomic # 6 Polarization: -55.83 SS G_CDS: 2.30 Total: -53.52 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.29 Total: -60.97 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -1.53 Total: -15.19 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 1.74 Total: 52.74 kcal Total: -65.94 3.71 -62.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.401 kcal (2) G-P(sol) polarization free energy of solvation -65.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds