Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00480 * 2 1 4 4 H 1.48495 * 109.47393 * 240.00186 * 3 2 1 5 5 H 1.48491 * 109.46886 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46764 * 120.00115 * 3 2 1 7 7 C 1.37884 * 119.99398 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99712 * 185.07984 * 7 2 1 9 9 C 1.50693 * 120.00387 * 5.07400 * 7 2 1 10 10 H 1.09003 * 109.47100 * 4.22360 * 9 7 2 11 11 C 1.53002 * 109.47298 * 124.22362 * 9 7 2 12 12 C 1.52997 * 117.49668 * 3.07984 * 11 9 7 13 13 C 1.53003 * 117.49527 * 294.42333 * 11 9 7 14 14 N 1.46901 * 109.47417 * 244.22377 * 9 7 2 15 15 C 1.46847 * 110.99329 * 295.79736 * 14 9 7 16 16 C 1.53027 * 109.51471 * 185.84824 * 15 14 9 17 17 C 1.53119 * 109.28176 * 300.81466 * 16 15 14 18 18 C 1.53119 * 109.15921 * 57.65357 * 17 16 15 19 19 H 1.08994 * 109.50293 * 62.29044 * 18 17 16 20 20 N 1.46900 * 109.50329 * 182.40847 * 18 17 16 21 21 C 1.46854 * 110.99911 * 59.99991 * 14 9 7 22 22 H 0.97005 * 119.99914 * 359.97438 * 1 2 3 23 23 H 1.08991 * 115.55126 * 148.75277 * 11 9 7 24 24 H 1.09002 * 117.49904 * 0.02562 * 12 11 9 25 25 H 1.08997 * 117.50247 * 145.02281 * 12 11 9 26 26 H 1.08997 * 117.49524 * 214.97446 * 13 11 9 27 27 H 1.08999 * 117.49849 * 359.97438 * 13 11 9 28 28 H 1.08996 * 109.47271 * 65.82878 * 15 14 9 29 29 H 1.09007 * 109.45157 * 305.85366 * 15 14 9 30 30 H 1.09003 * 109.50364 * 180.87391 * 16 15 14 31 31 H 1.09001 * 109.53972 * 60.77830 * 16 15 14 32 32 H 1.09006 * 109.52354 * 297.75124 * 17 16 15 33 33 H 1.09003 * 109.52746 * 177.55959 * 17 16 15 34 34 H 1.00907 * 111.00064 * 299.80936 * 20 18 17 35 35 H 1.00905 * 111.00366 * 63.75616 * 20 18 17 36 36 H 1.08999 * 109.46056 * 54.14114 * 21 14 9 37 37 H 1.09000 * 109.46024 * 294.16866 * 21 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7463 0.0006 6 1 3.1030 1.6961 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0813 -1.1961 0.0823 9 6 1.2553 -2.4966 -0.1165 10 1 0.1946 -2.2937 -0.2650 11 6 1.7943 -3.2906 -1.3081 12 6 2.9755 -2.6956 -2.0773 13 6 1.5791 -2.7028 -2.7042 14 7 1.4369 -3.2773 1.1145 15 6 2.8444 -3.6550 1.2952 16 6 2.9729 -4.5857 2.5031 17 6 2.4534 -3.8681 3.7519 18 6 1.0011 -3.4424 3.5192 19 1 0.3832 -4.3267 3.3635 20 7 0.5132 -2.7024 4.6907 21 6 0.9296 -2.5448 2.2819 22 1 -0.4850 0.8401 0.0004 23 1 1.7545 -4.3751 -1.2071 24 1 3.3688 -1.7387 -1.7342 25 1 3.7126 -3.3887 -2.4827 26 1 1.3981 -3.4007 -3.5217 27 1 1.0531 -1.7506 -2.7738 28 1 3.4425 -2.7592 1.4616 29 1 3.2000 -4.1683 0.4017 30 1 4.0198 -4.8536 2.6463 31 1 2.3865 -5.4885 2.3317 32 1 3.0646 -2.9867 3.9463 33 1 2.5028 -4.5425 4.6068 34 1 0.5506 -3.2744 5.5211 35 1 1.0306 -1.8455 4.8184 36 1 -0.1052 -2.2515 2.1051 37 1 1.5369 -1.6542 2.4437 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259861530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = 20.359678 kcal Electronic energy + Delta-G solvation = -16579.303414 eV Core-core repulsion = 14163.647210 eV Total energy + Delta-G solvation = -2415.656204 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.59239 -36.44481 -33.60368 -32.49468 -31.14336 -27.60177 -26.54098 -24.22784 -21.97388 -21.77718 -21.16298 -19.13280 -18.75609 -16.19455 -15.51158 -15.21448 -14.70501 -14.06189 -14.01879 -13.40437 -13.24375 -12.99275 -12.66973 -12.13325 -12.04975 -11.50078 -11.21480 -10.96259 -10.64377 -10.52160 -10.40690 -10.29390 -10.10918 -9.77815 -9.58069 -9.29718 -9.10704 -8.59703 -8.52769 -8.22167 -6.99480 -6.01333 -4.12669 3.25445 3.31944 3.34179 4.37055 4.78712 4.99112 5.16503 5.31465 5.38226 5.50680 5.73549 5.87970 5.97094 6.08954 6.14531 6.20707 6.27129 6.33317 6.43551 6.56080 6.56969 6.65847 6.75019 6.89101 6.98731 7.11168 7.21730 7.30892 7.35674 7.58579 7.72237 7.82261 7.83993 8.26280 8.40560 8.64343 9.03622 9.52925 10.98635 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.012265 C = 0.009250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.609329 B = 2282.350322 C = 3026.418188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.077 3.923 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.218 3.782 10 H 0.083 0.917 11 C -0.127 4.127 12 C -0.182 4.182 13 C -0.178 4.178 14 N -0.535 5.535 15 C 0.061 3.939 16 C -0.113 4.113 17 C -0.148 4.148 18 C 0.089 3.911 19 H 0.078 0.922 20 N -0.844 5.844 21 C 0.089 3.911 22 H 0.263 0.737 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.331 0.669 35 H 0.337 0.663 36 H 0.074 0.926 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.017 -5.878 3.938 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.127 4.127 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.071 0.929 9 C 0.113 3.887 10 H 0.101 0.899 11 C -0.146 4.146 12 C -0.219 4.219 13 C -0.216 4.216 14 N -0.259 5.259 15 C -0.068 4.068 16 C -0.151 4.151 17 C -0.188 4.188 18 C -0.023 4.023 19 H 0.096 0.904 20 N -0.371 5.371 21 C -0.040 4.040 22 H 0.073 0.927 23 H 0.097 0.903 24 H 0.124 0.876 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.847 -6.140 3.492 7.615 hybrid contribution 2.085 1.603 0.419 2.663 sum 4.931 -4.536 3.911 7.758 Atomic orbital electron populations 1.69873 1.05780 1.26859 1.49444 1.24948 0.94707 0.98871 0.94200 0.86847 0.79889 0.83831 0.78619 1.20206 1.21258 1.20435 1.21456 0.93375 0.91441 1.51092 0.92890 1.19109 0.98915 0.87820 0.82850 0.89918 1.22463 1.01351 0.97211 0.93543 1.22996 0.90593 1.03298 1.04988 1.22689 1.00561 1.02565 0.95791 1.62490 1.15687 1.43978 1.03787 1.21829 0.91888 0.96963 0.96101 1.21550 0.99258 0.99091 0.95232 1.22394 0.98860 0.99811 0.97750 1.21608 0.92230 0.97135 0.91287 0.90409 1.58850 1.62750 1.09202 1.06307 1.21537 1.01043 0.93583 0.87856 0.92679 0.90285 0.87567 0.91849 0.91210 0.88876 0.95110 0.91866 0.93103 0.92008 0.92806 0.93408 0.85716 0.85102 0.90759 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.37 12.63 55.43 0.70 -23.67 16 2 C 0.08 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.88 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -13.60 4.46 -34.44 -0.15 -13.75 16 8 H 0.05 1.38 6.26 -52.48 -0.33 1.05 16 9 C 0.22 5.23 2.50 -68.87 -0.17 5.06 16 10 H 0.08 2.29 6.95 -51.93 -0.36 1.92 16 11 C -0.13 -2.70 4.31 -90.62 -0.39 -3.09 16 12 C -0.18 -3.67 9.65 -26.70 -0.26 -3.93 16 13 C -0.18 -3.64 10.13 -26.69 -0.27 -3.91 16 14 N -0.53 -11.56 4.68 -228.08 -1.07 -12.63 16 15 C 0.06 1.19 4.87 -3.84 -0.02 1.17 16 16 C -0.11 -1.81 6.09 -26.66 -0.16 -1.98 16 17 C -0.15 -2.31 5.57 -26.61 -0.15 -2.45 16 18 C 0.09 1.54 3.41 -67.63 -0.23 1.31 16 19 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 20 N -0.84 -13.05 9.26 -4.60 -0.04 -13.09 16 21 C 0.09 1.91 4.59 -3.83 -0.02 1.89 16 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 23 H 0.08 1.62 7.90 -51.93 -0.41 1.21 16 24 H 0.11 2.36 5.99 -51.93 -0.31 2.05 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 28 H 0.03 0.66 7.00 -51.93 -0.36 0.30 16 29 H 0.06 1.22 6.58 -51.93 -0.34 0.88 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.33 4.21 9.04 -39.29 -0.36 3.86 16 35 H 0.34 5.11 8.98 -39.29 -0.35 4.75 16 36 H 0.07 1.82 8.12 -51.93 -0.42 1.40 16 37 H 0.04 0.88 7.31 -51.93 -0.38 0.50 16 LS Contribution 286.04 15.07 4.31 4.31 Total: -1.00 -26.26 286.04 -9.18 -35.44 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.14 Total: 11.65 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -1.92 Total: -17.76 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.41 Total: -49.39 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.26 -9.18 -35.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.797 kcal (2) G-P(sol) polarization free energy of solvation -26.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds