Wall clock time and date at job start Mon Mar 30 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99787 * 2 1 4 4 H 1.48504 * 109.46920 * 239.99635 * 3 2 1 5 5 H 1.48502 * 109.47576 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47312 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99697 * 185.20667 * 7 2 1 9 9 C 1.50699 * 120.00382 * 5.21170 * 7 2 1 10 10 H 1.09003 * 109.47136 * 354.96323 * 9 7 2 11 11 C 1.52994 * 109.47092 * 234.96236 * 9 7 2 12 12 C 1.53007 * 117.50063 * 133.39723 * 11 9 7 13 13 C 1.53005 * 117.50148 * 64.73442 * 11 9 7 14 14 N 1.46903 * 109.47330 * 114.96108 * 9 7 2 15 15 C 1.46849 * 110.99672 * 59.21140 * 14 9 7 16 16 C 1.53039 * 109.51740 * 174.16411 * 15 14 9 17 17 C 1.53117 * 109.28362 * 59.18236 * 16 15 14 18 18 C 1.53122 * 109.15626 * 302.34194 * 17 16 15 19 19 H 1.09000 * 109.53754 * 297.69648 * 18 17 16 20 20 N 1.46891 * 109.50437 * 177.59793 * 18 17 16 21 21 C 1.46847 * 110.99872 * 295.00069 * 14 9 7 22 22 H 0.97002 * 120.00086 * 359.97438 * 1 2 3 23 23 H 1.09003 * 115.55252 * 279.06078 * 11 9 7 24 24 H 1.09004 * 117.49504 * 359.97438 * 12 11 9 25 25 H 1.08994 * 117.49794 * 145.01970 * 12 11 9 26 26 H 1.09002 * 117.50122 * 214.97833 * 13 11 9 27 27 H 1.08996 * 117.49748 * 359.97438 * 13 11 9 28 28 H 1.09004 * 109.45926 * 294.17334 * 15 14 9 29 29 H 1.08996 * 109.46384 * 54.14513 * 15 14 9 30 30 H 1.09001 * 109.50308 * 299.22897 * 16 15 14 31 31 H 1.09004 * 109.53154 * 179.14053 * 16 15 14 32 32 H 1.08994 * 109.52398 * 182.44287 * 17 16 15 33 33 H 1.08993 * 109.52521 * 62.24109 * 17 16 15 34 34 H 1.00899 * 111.00560 * 60.19503 * 20 18 17 35 35 H 1.00901 * 111.00437 * 184.15093 * 20 18 17 36 36 H 1.09004 * 109.46173 * 305.85713 * 21 14 9 37 37 H 1.09005 * 109.46414 * 65.82143 * 21 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1959 0.0854 9 6 1.2557 -2.4965 -0.1174 10 1 0.1834 -2.3017 -0.1027 11 6 1.6251 -3.4053 1.0566 12 6 0.4824 -4.1049 1.7954 13 6 1.2265 -2.9438 2.4599 14 7 1.6163 -3.1561 -1.3795 15 6 3.0599 -3.4178 -1.4428 16 6 3.3774 -4.2319 -2.6992 17 6 2.9269 -3.4496 -3.9359 18 6 1.4300 -3.1481 -3.8220 19 1 0.8705 -4.0832 -3.7995 20 7 1.0016 -2.3480 -4.9771 21 6 1.1688 -2.3654 -2.5332 22 1 -0.4850 0.8401 0.0004 23 1 2.5646 -3.9484 0.9534 24 1 -0.5327 -3.9173 1.4451 25 1 0.6702 -5.1079 2.1784 26 1 1.9035 -3.1836 3.2799 27 1 0.7015 -1.9926 2.5467 28 1 3.5994 -2.4712 -1.4775 29 1 3.3665 -3.9782 -0.5597 30 1 2.8492 -5.1845 -2.6587 31 1 4.4508 -4.4132 -2.7544 32 1 3.1116 -4.0444 -4.8304 33 1 3.4831 -2.5143 -3.9979 34 1 1.1639 -2.8438 -5.8407 35 1 0.0329 -2.0788 -4.8913 36 1 0.1020 -2.1614 -2.4418 37 1 1.7172 -1.4237 -2.5627 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259861533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:46 Heat of formation + Delta-G solvation = 20.299425 kcal Electronic energy + Delta-G solvation = -16476.084510 eV Core-core repulsion = 14060.425693 eV Total energy + Delta-G solvation = -2415.658817 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.50524 -36.32510 -33.72288 -32.53052 -31.19432 -27.77863 -26.63443 -23.99113 -21.90400 -21.82534 -21.32141 -18.99562 -18.60614 -16.29230 -15.52012 -15.16881 -14.61962 -14.53914 -13.97322 -13.85744 -13.12271 -12.96353 -12.48871 -12.01558 -11.78972 -11.40831 -11.18438 -11.03217 -10.82346 -10.59959 -10.55039 -10.30162 -10.07677 -9.73171 -9.55900 -9.18418 -9.03936 -8.78713 -8.52150 -8.27627 -6.97939 -6.00047 -4.11257 3.29993 3.34890 3.38405 4.39889 4.70273 4.95652 5.21525 5.35200 5.44041 5.55508 5.71605 5.88611 5.94205 6.07520 6.15968 6.17909 6.21594 6.36149 6.45616 6.52762 6.58122 6.63394 6.74062 6.84242 6.98721 6.99415 7.16617 7.18975 7.27094 7.56086 7.73868 7.79691 7.85410 8.24549 8.38842 8.61641 9.04341 9.55430 11.00228 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.012585 C = 0.009195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.755679 B = 2224.282164 C = 3044.463300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.884 3.116 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.218 3.782 10 H 0.081 0.919 11 C -0.112 4.112 12 C -0.197 4.197 13 C -0.170 4.170 14 N -0.535 5.535 15 C 0.057 3.943 16 C -0.115 4.115 17 C -0.107 4.107 18 C 0.090 3.910 19 H 0.032 0.968 20 N -0.848 5.848 21 C 0.084 3.916 22 H 0.263 0.737 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.332 0.668 35 H 0.340 0.660 36 H 0.060 0.940 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -6.500 -4.364 8.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.570 4.570 8 H 0.069 0.931 9 C 0.113 3.887 10 H 0.099 0.901 11 C -0.131 4.131 12 C -0.234 4.234 13 C -0.208 4.208 14 N -0.260 5.260 15 C -0.071 4.071 16 C -0.154 4.154 17 C -0.145 4.145 18 C -0.021 4.021 19 H 0.050 0.950 20 N -0.377 5.377 21 C -0.045 4.045 22 H 0.073 0.927 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.078 0.922 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.507 -6.309 -4.129 7.946 hybrid contribution 0.251 1.002 -0.076 1.036 sum 2.759 -5.306 -4.205 7.311 Atomic orbital electron populations 1.69866 1.05855 1.26857 1.50080 1.24928 0.94730 0.98981 0.94033 0.86787 0.79878 0.83504 0.78689 1.20190 1.21294 1.20283 1.21437 0.93493 0.91282 1.50807 0.93058 1.19153 0.98941 0.88248 0.82356 0.90081 1.22432 0.96334 1.00197 0.94141 1.22926 0.98026 0.95564 1.06900 1.22690 1.03533 0.98613 0.95966 1.62505 1.12546 1.47238 1.03682 1.21887 0.91292 0.98109 0.95839 1.21596 0.99341 0.99103 0.95319 1.21528 0.95893 1.00040 0.97075 1.21441 0.95078 0.94322 0.91230 0.94983 1.58650 1.26710 1.48175 1.04195 1.21560 1.00115 0.94998 0.87795 0.92746 0.90041 0.89680 0.90951 0.90962 0.88575 0.94511 0.91972 0.92196 0.92696 0.93478 0.91731 0.85669 0.84793 0.92168 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 12.62 55.43 0.70 -24.06 16 2 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 3 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -13.95 6.14 -34.44 -0.21 -14.16 16 8 H 0.05 1.38 7.07 -52.49 -0.37 1.01 16 9 C 0.22 5.27 2.27 -68.87 -0.16 5.12 16 10 H 0.08 2.23 6.66 -51.93 -0.35 1.88 16 11 C -0.11 -2.42 5.00 -90.62 -0.45 -2.88 16 12 C -0.20 -3.85 10.18 -26.69 -0.27 -4.12 16 13 C -0.17 -3.52 10.00 -26.69 -0.27 -3.79 16 14 N -0.54 -11.66 4.64 -228.07 -1.06 -12.71 16 15 C 0.06 1.13 4.82 -3.83 -0.02 1.12 16 16 C -0.12 -1.88 6.09 -26.65 -0.16 -2.04 16 17 C -0.11 -1.75 5.58 -26.61 -0.15 -1.89 16 18 C 0.09 1.58 3.41 -67.64 -0.23 1.35 16 19 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 20 N -0.85 -13.01 9.25 -4.60 -0.04 -13.05 16 21 C 0.08 1.82 4.67 -3.83 -0.02 1.80 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.08 1.69 6.05 -51.93 -0.31 1.38 16 24 H 0.08 1.72 8.08 -51.93 -0.42 1.30 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.10 2.22 8.14 -51.93 -0.42 1.79 16 28 H 0.04 0.81 6.88 -51.93 -0.36 0.45 16 29 H 0.06 1.20 5.87 -51.93 -0.30 0.90 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.33 4.19 9.04 -39.29 -0.36 3.84 16 35 H 0.34 4.95 8.99 -39.29 -0.35 4.59 16 36 H 0.06 1.39 8.08 -51.93 -0.42 0.98 16 37 H 0.05 1.17 7.44 -51.93 -0.39 0.79 16 LS Contribution 288.59 15.07 4.35 4.35 Total: -1.00 -27.16 288.59 -9.25 -36.41 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.14 Total: 10.36 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.03 Total: -17.53 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.40 Total: -49.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.16 -9.25 -36.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.711 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds