Wall clock time and date at job start Mon Mar 30 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99787 * 2 1 4 4 H 1.48504 * 109.46920 * 239.99635 * 3 2 1 5 5 H 1.48502 * 109.47576 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47312 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99697 * 185.20667 * 7 2 1 9 9 C 1.50699 * 120.00382 * 5.21170 * 7 2 1 10 10 H 1.09003 * 109.47136 * 354.96323 * 9 7 2 11 11 C 1.52994 * 109.47092 * 234.96236 * 9 7 2 12 12 C 1.53007 * 117.50063 * 133.39723 * 11 9 7 13 13 C 1.53005 * 117.50148 * 64.73442 * 11 9 7 14 14 N 1.46903 * 109.47330 * 114.96108 * 9 7 2 15 15 C 1.46849 * 110.99672 * 59.21140 * 14 9 7 16 16 C 1.53039 * 109.51740 * 174.16411 * 15 14 9 17 17 C 1.53117 * 109.28362 * 59.18236 * 16 15 14 18 18 C 1.53122 * 109.15626 * 302.34194 * 17 16 15 19 19 H 1.09000 * 109.53754 * 297.69648 * 18 17 16 20 20 N 1.46891 * 109.50437 * 177.59793 * 18 17 16 21 21 C 1.46847 * 110.99872 * 295.00069 * 14 9 7 22 22 H 0.97002 * 120.00086 * 359.97438 * 1 2 3 23 23 H 1.09003 * 115.55252 * 279.06078 * 11 9 7 24 24 H 1.09004 * 117.49504 * 359.97438 * 12 11 9 25 25 H 1.08994 * 117.49794 * 145.01970 * 12 11 9 26 26 H 1.09002 * 117.50122 * 214.97833 * 13 11 9 27 27 H 1.08996 * 117.49748 * 359.97438 * 13 11 9 28 28 H 1.09004 * 109.45926 * 294.17334 * 15 14 9 29 29 H 1.08996 * 109.46384 * 54.14513 * 15 14 9 30 30 H 1.09001 * 109.50308 * 299.22897 * 16 15 14 31 31 H 1.09004 * 109.53154 * 179.14053 * 16 15 14 32 32 H 1.08994 * 109.52398 * 182.44287 * 17 16 15 33 33 H 1.08993 * 109.52521 * 62.24109 * 17 16 15 34 34 H 1.00899 * 111.00560 * 60.19503 * 20 18 17 35 35 H 1.00901 * 111.00437 * 184.15093 * 20 18 17 36 36 H 1.09004 * 109.46173 * 305.85713 * 21 14 9 37 37 H 1.09005 * 109.46414 * 65.82143 * 21 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1959 0.0854 9 6 1.2557 -2.4965 -0.1174 10 1 0.1834 -2.3017 -0.1027 11 6 1.6251 -3.4053 1.0566 12 6 0.4824 -4.1049 1.7954 13 6 1.2265 -2.9438 2.4599 14 7 1.6163 -3.1561 -1.3795 15 6 3.0599 -3.4178 -1.4428 16 6 3.3774 -4.2319 -2.6992 17 6 2.9269 -3.4496 -3.9359 18 6 1.4300 -3.1481 -3.8220 19 1 0.8705 -4.0832 -3.7995 20 7 1.0016 -2.3480 -4.9771 21 6 1.1688 -2.3654 -2.5332 22 1 -0.4850 0.8401 0.0004 23 1 2.5646 -3.9484 0.9534 24 1 -0.5327 -3.9173 1.4451 25 1 0.6702 -5.1079 2.1784 26 1 1.9035 -3.1836 3.2799 27 1 0.7015 -1.9926 2.5467 28 1 3.5994 -2.4712 -1.4775 29 1 3.3665 -3.9782 -0.5597 30 1 2.8492 -5.1845 -2.6587 31 1 4.4508 -4.4132 -2.7544 32 1 3.1116 -4.0444 -4.8304 33 1 3.4831 -2.5143 -3.9979 34 1 1.1639 -2.8438 -5.8407 35 1 0.0329 -2.0788 -4.8913 36 1 0.1020 -2.1614 -2.4418 37 1 1.7172 -1.4237 -2.5627 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259861533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:46 Heat of formation + Delta-G solvation = 1.617487 kcal Electronic energy + Delta-G solvation = -16476.894620 eV Core-core repulsion = 14060.425693 eV Total energy + Delta-G solvation = -2416.468927 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14881 -37.93989 -35.34904 -34.35584 -32.79832 -29.39616 -28.40986 -25.87525 -23.55131 -23.33680 -22.95026 -20.60085 -20.33362 -18.31169 -17.15213 -16.66318 -16.43765 -15.98360 -15.54363 -15.45772 -14.81218 -14.64468 -14.25701 -13.60111 -13.37494 -13.17464 -12.95435 -12.89103 -12.54943 -12.33906 -12.21918 -11.93939 -11.67579 -11.44029 -11.10521 -11.01129 -10.78148 -10.60630 -10.49581 -9.55814 -8.86112 -8.05144 -6.23511 1.33997 1.36145 1.41985 2.37923 3.02272 3.30775 3.41077 3.82313 4.01716 4.13439 4.21781 4.31934 4.43670 4.48756 4.52045 4.66848 4.75675 4.88935 4.93272 5.01813 5.08063 5.15761 5.18241 5.23179 5.30881 5.38193 5.44106 5.50354 5.56463 5.67489 5.84631 6.22756 6.27189 6.52665 6.69502 6.80471 6.99571 7.44736 8.91158 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.012585 C = 0.009195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.755679 B = 2224.282164 C = 3044.463300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.032 3.968 3 Si 0.934 3.066 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.531 4.531 8 H 0.041 0.959 9 C 0.222 3.778 10 H 0.041 0.959 11 C -0.129 4.129 12 C -0.174 4.174 13 C -0.172 4.172 14 N -0.532 5.532 15 C 0.058 3.942 16 C -0.107 4.107 17 C -0.104 4.104 18 C 0.100 3.900 19 H 0.040 0.960 20 N -0.852 5.852 21 C 0.095 3.905 22 H 0.261 0.739 23 H 0.096 0.904 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.008 0.992 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.352 0.648 35 H 0.343 0.657 36 H 0.031 0.969 37 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -8.265 -4.954 10.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.168 4.168 3 Si 0.760 3.240 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.059 0.941 9 C 0.116 3.884 10 H 0.059 0.941 11 C -0.148 4.148 12 C -0.211 4.211 13 C -0.210 4.210 14 N -0.256 5.256 15 C -0.071 4.071 16 C -0.145 4.145 17 C -0.142 4.142 18 C -0.011 4.011 19 H 0.058 0.942 20 N -0.384 5.384 21 C -0.035 4.035 22 H 0.070 0.930 23 H 0.114 0.886 24 H 0.090 0.910 25 H 0.126 0.874 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.027 0.973 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.050 0.950 37 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 3.782 -8.083 -4.734 10.102 hybrid contribution -0.151 1.537 0.097 1.547 sum 3.631 -6.546 -4.638 8.806 Atomic orbital electron populations 1.69985 1.06917 1.27142 1.51540 1.25521 0.95360 1.01637 0.94270 0.85986 0.78842 0.80574 0.78564 1.20444 1.20975 1.19607 1.21613 0.92968 0.92598 1.49835 0.94076 1.18932 0.96266 0.88566 0.84641 0.94123 1.22349 0.97962 1.01033 0.93481 1.22940 0.96522 0.96759 1.04905 1.22656 1.04105 0.97853 0.96345 1.62492 1.14176 1.46159 1.02741 1.21968 0.89190 0.97514 0.98404 1.21565 1.01276 0.98633 0.93059 1.21519 0.94245 0.99831 0.98600 1.21270 0.96473 0.93799 0.89604 0.94176 1.58573 1.27123 1.48253 1.04490 1.21439 0.97617 0.94147 0.90273 0.93026 0.88641 0.90982 0.87390 0.88146 0.91859 0.97320 0.91325 0.90938 0.89977 0.90057 0.93468 0.83415 0.84420 0.95004 0.97530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.22 12.62 21.45 0.27 -52.94 16 2 C 0.03 1.80 5.45 84.65 0.46 2.26 16 3 Si 0.93 44.66 29.54 68.60 2.03 46.69 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.53 -28.74 6.14 25.60 0.16 -28.58 16 8 H 0.04 2.27 7.07 -2.91 -0.02 2.25 16 9 C 0.22 11.02 2.27 44.17 0.10 11.13 16 10 H 0.04 2.34 6.66 -2.39 -0.02 2.33 16 11 C -0.13 -5.52 5.00 -10.79 -0.05 -5.58 16 12 C -0.17 -6.54 10.18 30.62 0.31 -6.23 16 13 C -0.17 -7.00 10.00 30.62 0.31 -6.69 16 14 N -0.53 -23.34 4.64 -875.49 -4.06 -27.41 16 15 C 0.06 2.22 4.82 86.33 0.42 2.64 16 16 C -0.11 -3.18 6.09 30.65 0.19 -2.99 16 17 C -0.10 -3.11 5.58 30.67 0.17 -2.94 16 18 C 0.10 3.36 3.41 44.97 0.15 3.52 16 19 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 20 N -0.85 -25.07 9.25 -168.47 -1.56 -26.62 16 21 C 0.09 4.19 4.67 86.33 0.40 4.59 16 22 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 23 H 0.10 3.80 6.05 -2.39 -0.01 3.78 16 24 H 0.07 2.89 8.08 -2.39 -0.02 2.87 16 25 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 26 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 27 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.01 0.38 6.88 -2.38 -0.02 0.36 16 29 H 0.07 2.54 5.87 -2.39 -0.01 2.53 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.35 7.99 9.04 -89.69 -0.81 7.18 16 35 H 0.34 9.80 8.99 -89.69 -0.81 8.99 16 36 H 0.03 1.54 8.08 -2.38 -0.02 1.53 16 37 H 0.01 0.33 7.44 -2.38 -0.02 0.31 16 Total: -1.00 -60.59 288.59 -1.27 -61.87 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -0.56 Total: 27.29 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 2.61 Total: -28.87 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -5.35 Total: -106.98 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -60.59 -1.27 -61.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.483 kcal (2) G-P(sol) polarization free energy of solvation -60.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds