Wall clock time and date at job start Mon Mar 30 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47231 * 299.99867 * 3 2 1 6 6 H 1.48502 * 109.47486 * 59.99712 * 3 2 1 7 7 C 1.38814 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99704 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99477 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 180.02562 * 10 9 7 12 12 C 1.53114 * 109.52194 * 294.87905 * 11 10 9 13 13 C 1.53046 * 109.27481 * 182.50511 * 12 11 10 14 14 N 1.46850 * 109.57729 * 59.07853 * 13 12 11 15 15 C 1.46900 * 110.99866 * 174.19574 * 14 13 12 16 16 C 1.53003 * 117.50174 * 12.83474 * 15 14 13 17 17 C 1.52992 * 117.49950 * 304.20899 * 15 14 13 18 18 C 1.46846 * 111.19808 * 298.29262 * 14 13 12 19 19 C 1.53036 * 109.52067 * 61.74220 * 18 14 13 20 20 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 21 21 H 0.96992 * 120.00556 * 0.02562 * 9 7 2 22 22 H 1.09001 * 109.46891 * 60.00526 * 10 9 7 23 23 H 1.08993 * 109.47378 * 299.99898 * 10 9 7 24 24 H 1.09000 * 109.51926 * 55.00445 * 11 10 9 25 25 H 1.09004 * 109.50580 * 302.37760 * 12 11 10 26 26 H 1.08992 * 109.50873 * 62.50001 * 12 11 10 27 27 H 1.09006 * 109.40582 * 299.06531 * 13 12 11 28 28 H 1.08998 * 109.46097 * 179.12666 * 13 12 11 29 29 H 1.09002 * 115.54377 * 158.53831 * 15 14 13 30 30 H 1.08998 * 117.49408 * 359.97438 * 16 15 14 31 31 H 1.08997 * 117.49803 * 145.02102 * 16 15 14 32 32 H 1.09001 * 117.49792 * 214.97984 * 17 15 14 33 33 H 1.08998 * 117.50421 * 0.02562 * 17 15 14 34 34 H 1.08995 * 109.46441 * 301.72726 * 18 14 13 35 35 H 1.08997 * 109.45651 * 181.74962 * 18 14 13 36 36 H 1.09003 * 109.50177 * 180.88274 * 19 18 14 37 37 H 1.08995 * 109.54057 * 60.78136 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 6 0.2705 -4.8150 1.3074 13 6 -0.6777 -6.0162 1.3280 14 7 0.0979 -7.2574 1.2076 15 6 -0.7664 -8.4352 1.3618 16 6 -2.2793 -8.2133 1.3081 17 6 -1.6003 -8.5370 2.6404 18 6 0.8300 -7.3048 -0.0644 19 6 1.8243 -6.1430 -0.1258 20 1 -0.4850 0.8400 -0.0004 21 1 0.3557 -2.3881 -0.0005 22 1 2.6854 -3.7149 0.8879 23 1 2.6841 -3.7141 -0.8921 24 1 0.3791 -4.7131 -0.8433 25 1 0.9586 -4.8814 2.1502 26 1 -0.3068 -3.8933 1.3799 27 1 -1.3752 -5.9414 0.4936 28 1 -1.2330 -6.0245 2.2659 29 1 -0.3780 -9.3618 0.9390 30 1 -2.6333 -7.1933 1.1588 31 1 -2.8865 -8.9939 0.8499 32 1 -1.7609 -9.5307 3.0587 33 1 -1.5080 -7.7299 3.3672 34 1 0.1255 -7.2239 -0.8922 35 1 1.3697 -8.2489 -0.1378 36 1 2.3565 -6.1693 -1.0767 37 1 2.5381 -6.2305 0.6933 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260057456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:17 Heat of formation + Delta-G solvation = 32.171441 kcal Electronic energy + Delta-G solvation = -15638.434363 eV Core-core repulsion = 13223.290356 eV Total energy + Delta-G solvation = -2415.144008 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.57672 -36.75431 -34.31433 -32.12041 -30.60808 -29.98760 -26.08858 -23.42755 -23.22087 -22.45364 -21.36562 -20.28652 -19.16214 -17.13249 -16.51559 -15.44480 -14.69132 -14.42950 -14.05697 -13.90898 -13.58707 -13.38639 -12.86848 -12.25019 -12.15841 -11.88995 -11.75910 -11.58364 -10.93820 -10.86016 -10.84253 -10.78144 -10.47485 -10.18098 -10.12803 -10.00672 -9.75453 -9.54200 -8.82479 -8.08664 -6.85630 -5.72393 -3.00027 3.46060 3.51648 3.53972 3.61187 4.00820 4.63225 4.73398 4.83111 4.91529 5.05072 5.13605 5.23234 5.45927 5.51397 5.56005 5.62308 5.63896 5.70381 5.82079 5.86119 5.98711 6.02311 6.04038 6.19635 6.25385 6.34373 6.45282 6.59946 6.73562 6.87657 7.01092 7.17155 7.19587 7.74986 8.47241 9.58163 10.17713 10.52453 11.50950 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.053476 B = 0.005297 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.478104 B = 5285.069829 C = 5621.957010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.095 4.095 12 C -0.106 4.106 13 C 0.052 3.948 14 N -0.506 5.506 15 C 0.024 3.976 16 C -0.224 4.224 17 C -0.173 4.173 18 C 0.060 3.940 19 C -0.109 4.109 20 H 0.254 0.746 21 H 0.383 0.617 22 H 0.019 0.981 23 H 0.017 0.983 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -17.423 1.895 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.031 3.969 11 C -0.114 4.114 12 C -0.144 4.144 13 C -0.075 4.075 14 N -0.228 5.228 15 C -0.085 4.085 16 C -0.263 4.263 17 C -0.211 4.211 18 C -0.067 4.067 19 C -0.147 4.147 20 H 0.064 0.936 21 H 0.217 0.783 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.368 -17.291 2.262 17.491 hybrid contribution -0.546 0.955 -0.625 1.265 sum -1.914 -16.336 1.637 16.529 Atomic orbital electron populations 1.69670 1.05108 1.25432 1.58252 1.24727 0.95513 0.97639 1.03280 0.86122 0.78797 0.84194 0.77145 1.20575 1.21938 1.21907 1.19308 0.91084 0.84276 1.42042 0.91187 1.42395 1.05843 1.00044 1.89381 1.20674 0.93207 0.85387 0.97647 1.21358 0.97767 0.94547 0.97717 1.21596 0.98240 0.96556 0.98026 1.22267 0.95404 0.89313 1.00491 1.61824 1.26395 1.00830 1.33799 1.22646 0.88712 0.95317 1.01870 1.23562 0.97326 1.03302 1.02136 1.23046 1.03748 1.02879 0.91440 1.22074 0.96096 0.99221 0.89319 1.21590 0.97644 0.93465 1.02023 0.93644 0.78317 0.96287 0.96549 0.91672 0.91419 0.90378 0.94582 0.91028 0.86651 0.88171 0.89104 0.88724 0.88514 0.94889 0.91108 0.91529 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.75 13.06 55.49 0.72 -28.03 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -19.03 5.35 -59.90 -0.32 -19.36 16 10 C 0.16 3.31 5.66 -4.04 -0.02 3.29 16 11 C -0.09 -1.61 2.29 -90.50 -0.21 -1.82 16 12 C -0.11 -1.77 5.23 -26.65 -0.14 -1.90 16 13 C 0.05 0.74 4.12 -3.83 -0.02 0.72 16 14 N -0.51 -6.61 4.88 -226.69 -1.11 -7.72 16 15 C 0.02 0.27 6.11 -67.72 -0.41 -0.15 16 16 C -0.22 -2.31 9.58 -26.73 -0.26 -2.56 16 17 C -0.17 -1.74 9.94 -26.73 -0.27 -2.01 16 18 C 0.06 0.75 5.44 -3.83 -0.02 0.73 16 19 C -0.11 -1.51 5.38 -26.65 -0.14 -1.65 16 20 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.38 10.38 6.87 -40.82 -0.28 10.10 16 22 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.08 1.47 7.26 -51.93 -0.38 1.09 16 27 H 0.04 0.52 7.12 -51.93 -0.37 0.15 16 28 H 0.07 0.96 6.42 -51.93 -0.33 0.63 16 29 H 0.12 1.11 8.04 -51.93 -0.42 0.70 16 30 H 0.10 1.13 5.97 -51.93 -0.31 0.82 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.05 7.23 -51.93 -0.38 0.67 16 34 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 289.79 15.07 4.37 4.37 Total: -1.00 -30.45 289.79 -9.32 -39.77 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.23 Total: 6.03 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.73 Total: -12.84 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.70 Total: -55.10 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.45 -9.32 -39.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.943 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds