Wall clock time and date at job start Mon Mar 30 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00094 * 2 1 4 4 H 1.48508 * 109.47167 * 240.00074 * 3 2 1 5 5 H 1.48500 * 109.47477 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47220 * 120.00530 * 3 2 1 7 7 C 1.38820 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99426 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00064 * 179.97438 * 9 7 2 11 11 H 1.08998 * 108.73440 * 326.69456 * 10 9 7 12 12 C 1.50467 * 108.76852 * 84.99792 * 10 9 7 13 13 C 1.54506 * 108.85152 * 213.07228 * 12 10 9 14 14 C 1.45862 * 111.59309 * 282.80811 * 13 12 10 15 15 N 1.47804 * 112.91682 * 61.32397 * 14 13 12 16 16 C 1.46908 * 110.99679 * 153.87075 * 15 14 13 17 17 C 1.53001 * 117.49451 * 179.05202 * 16 15 14 18 18 C 1.53004 * 117.49528 * 247.67293 * 16 15 14 19 19 C 1.44272 * 109.46689 * 276.74141 * 15 14 13 20 20 C 1.54069 * 111.97754 * 96.43508 * 19 15 14 21 21 H 0.97001 * 119.99969 * 0.02562 * 1 2 3 22 22 H 0.97002 * 120.00389 * 359.97438 * 9 7 2 23 23 H 1.09000 * 109.57122 * 93.26379 * 12 10 9 24 24 H 1.08993 * 109.67645 * 332.94528 * 12 10 9 25 25 H 1.08995 * 109.05781 * 162.26479 * 13 12 10 26 26 H 1.09005 * 109.05715 * 43.34978 * 13 12 10 27 27 H 1.09000 * 108.79273 * 300.44409 * 14 13 12 28 28 H 1.08997 * 108.79712 * 182.21767 * 14 13 12 29 29 H 1.08993 * 115.56438 * 33.36195 * 16 15 14 30 30 H 1.09000 * 117.49986 * 359.97438 * 17 16 15 31 31 H 1.08997 * 117.49492 * 214.97611 * 17 16 15 32 32 H 1.09000 * 117.49675 * 145.02416 * 18 16 15 33 33 H 1.08998 * 117.50069 * 359.97438 * 18 16 15 34 34 H 1.08994 * 108.97853 * 217.08347 * 19 15 14 35 35 H 1.09004 * 108.97515 * 335.79275 * 19 15 14 36 36 H 1.09006 * 108.91346 * 198.19293 * 20 19 15 37 37 H 1.08999 * 108.84264 * 79.59460 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0027 11 1 2.9801 -3.5282 -0.5694 12 6 2.4076 -4.0153 1.4162 13 6 3.7622 -4.7583 1.4241 14 6 3.6170 -6.1439 0.9921 15 7 3.1072 -6.2654 -0.3899 16 6 3.5385 -7.5299 -1.0008 17 6 3.0731 -7.8192 -2.4294 18 6 4.5336 -7.4509 -2.1604 19 6 1.6684 -6.1591 -0.3828 20 6 1.1944 -4.7281 -0.7007 21 1 -0.4850 0.8401 -0.0004 22 1 0.3555 -2.3881 -0.0016 23 1 1.6340 -4.6618 1.8307 24 1 2.4851 -3.1082 2.0154 25 1 4.1714 -4.7416 2.4342 26 1 4.4526 -4.2469 0.7533 27 1 2.9274 -6.6516 1.6665 28 1 4.5885 -6.6343 1.0524 29 1 3.6263 -8.3758 -0.3191 30 1 2.4466 -7.0715 -2.9157 31 1 2.8547 -8.8554 -2.6874 32 1 5.2760 -8.2449 -2.2414 33 1 4.8679 -6.4608 -2.4702 34 1 1.2588 -6.8419 -1.1271 35 1 1.2967 -6.4453 0.6012 36 1 0.1606 -4.6173 -0.3730 37 1 1.2416 -4.5729 -1.7786 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260222547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:56 Heat of formation + Delta-G solvation = 22.683749 kcal Electronic energy + Delta-G solvation = -15995.323511 eV Core-core repulsion = 13579.768086 eV Total energy + Delta-G solvation = -2415.555425 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.48588 -37.89348 -35.88516 -33.71843 -33.28401 -30.90317 -26.95233 -26.32974 -24.36261 -22.98252 -22.41055 -21.38502 -20.32630 -19.08132 -17.58349 -16.62725 -16.43418 -15.99225 -15.65969 -15.18498 -15.02507 -14.49570 -14.14727 -13.65127 -13.54095 -13.24469 -12.84616 -12.75720 -12.32576 -12.22589 -12.15121 -12.03144 -11.78136 -11.55869 -11.34176 -11.28114 -11.18822 -10.94464 -10.84095 -9.15429 -8.96145 -7.91552 -5.18899 1.45977 1.49416 1.55472 2.57940 2.83953 2.96801 3.41206 3.80932 4.02424 4.03986 4.10028 4.14792 4.28889 4.36523 4.38296 4.46786 4.55014 4.77195 4.78179 4.84882 4.90539 4.94932 5.00600 5.08037 5.15863 5.19151 5.33397 5.38009 5.40808 5.53538 5.59634 5.76695 6.23635 6.31662 6.37565 7.36359 8.16226 8.38878 9.32304 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.040403 B = 0.006355 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.846087 B = 4405.138099 C = 4475.918717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.744 5.744 10 C 0.186 3.814 11 H 0.030 0.970 12 C -0.121 4.121 13 C -0.108 4.108 14 C 0.068 3.932 15 N -0.519 5.519 16 C -0.001 4.001 17 C -0.173 4.173 18 C -0.163 4.163 19 C 0.070 3.930 20 C -0.105 4.105 21 H 0.250 0.750 22 H 0.368 0.632 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.614 -18.151 -0.414 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.384 5.384 10 C 0.079 3.921 11 H 0.048 0.952 12 C -0.161 4.161 13 C -0.146 4.146 14 C -0.059 4.059 15 N -0.243 5.243 16 C -0.110 4.110 17 C -0.210 4.210 18 C -0.201 4.201 19 C -0.059 4.059 20 C -0.145 4.145 21 H 0.059 0.941 22 H 0.200 0.800 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.962 -17.646 -0.710 19.372 hybrid contribution -0.573 0.834 0.418 1.095 sum 7.389 -16.811 -0.292 18.366 Atomic orbital electron populations 1.69815 1.06560 1.25925 1.60110 1.25523 0.96370 1.00926 1.04251 0.85249 0.77228 0.79432 0.78123 1.20614 1.22044 1.20428 1.19552 0.91182 0.85477 1.40341 0.91253 1.42872 1.05308 1.01318 1.88914 1.20114 0.93766 0.84435 0.93821 0.95227 1.21933 0.97046 0.98811 0.98331 1.20508 0.96792 0.96123 1.01175 1.20949 1.00623 0.96790 0.87525 1.61261 1.10339 1.32872 1.19878 1.22592 1.05807 0.91669 0.90886 1.23094 0.97988 1.02840 0.97077 1.23083 0.92778 1.02815 1.01401 1.21797 0.87778 0.95403 1.00904 1.22102 0.98313 0.94548 0.99496 0.94146 0.80024 0.92764 0.94316 0.90429 0.93060 0.93839 0.90059 0.87794 0.89755 0.86690 0.86908 0.90046 0.90419 0.93774 0.92839 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.55 13.06 21.65 0.28 -61.27 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 0.97 47.78 29.55 68.60 2.03 49.81 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.23 -13.61 9.73 84.04 0.82 -12.80 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -39.75 4.96 -324.76 -1.61 -41.36 16 10 C 0.19 7.89 2.39 44.61 0.11 8.00 16 11 H 0.03 1.37 7.28 -2.39 -0.02 1.35 16 12 C -0.12 -4.53 5.25 30.29 0.16 -4.37 16 13 C -0.11 -3.16 5.53 28.92 0.16 -3.00 16 14 C 0.07 1.65 4.92 83.94 0.41 2.06 16 15 N -0.52 -13.54 4.38 -886.45 -3.88 -17.41 16 16 C 0.00 -0.03 5.03 44.92 0.23 0.20 16 17 C -0.17 -3.21 9.28 30.60 0.28 -2.92 16 18 C -0.16 -3.11 10.46 30.60 0.32 -2.79 16 19 C 0.07 1.91 5.00 87.16 0.44 2.35 16 20 C -0.11 -3.75 5.69 31.39 0.18 -3.57 16 21 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 22 H 0.37 21.02 7.66 -92.71 -0.71 20.31 16 23 H 0.05 1.88 7.15 -2.39 -0.02 1.87 16 24 H 0.04 1.68 7.81 -2.39 -0.02 1.66 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 1.67 7.59 -2.38 -0.02 1.65 16 27 H 0.04 0.98 7.24 -2.39 -0.02 0.96 16 28 H 0.08 1.67 7.81 -2.39 -0.02 1.65 16 29 H 0.10 1.77 8.08 -2.39 -0.02 1.75 16 30 H 0.08 1.86 7.75 -2.39 -0.02 1.84 16 31 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.87 6.38 -2.39 -0.02 1.86 16 35 H 0.04 1.15 6.51 -2.39 -0.02 1.14 16 36 H 0.05 1.94 7.93 -2.38 -0.02 1.92 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -65.80 288.08 0.71 -65.08 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.33 Total: 26.24 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 3.57 Total: -21.08 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -5.21 Total: -120.05 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -65.80 0.71 -65.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.766 kcal (2) G-P(sol) polarization free energy of solvation -65.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds