Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00226 * 2 1 4 4 H 1.48489 * 109.47286 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47044 * 120.00117 * 3 2 1 6 6 H 1.48502 * 109.46907 * 239.99358 * 3 2 1 7 7 C 1.37884 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99848 * 186.36347 * 7 2 1 9 9 C 1.50704 * 119.99735 * 6.37232 * 7 2 1 10 10 N 1.46904 * 109.52148 * 304.96178 * 9 7 2 11 11 C 1.48532 * 111.00098 * 182.24549 * 10 9 7 12 12 C 1.54932 * 103.22947 * 159.72317 * 11 10 9 13 13 C 1.54592 * 102.92032 * 322.58672 * 12 11 10 14 14 C 1.47901 * 111.00210 * 299.64338 * 10 9 7 15 15 C 1.53118 * 109.52066 * 184.77588 * 9 7 2 16 16 C 1.53031 * 109.27987 * 297.74800 * 15 9 7 17 17 N 1.46844 * 109.52302 * 300.82357 * 16 15 9 18 18 C 1.46845 * 111.20100 * 61.73770 * 17 16 15 19 19 C 1.53032 * 109.52420 * 298.26333 * 18 17 16 20 20 H 0.97008 * 119.99304 * 0.02562 * 1 2 3 21 21 H 1.09001 * 110.66475 * 278.15788 * 11 10 9 22 22 H 1.08994 * 110.66759 * 41.28550 * 11 10 9 23 23 H 1.08997 * 110.72640 * 204.22848 * 12 11 10 24 24 H 1.09007 * 110.87667 * 81.01305 * 12 11 10 25 25 H 1.09003 * 110.30868 * 263.04062 * 13 12 11 26 26 H 1.09002 * 110.39414 * 140.91288 * 13 12 11 27 27 H 1.09002 * 109.91597 * 333.50639 * 14 10 9 28 28 H 1.09004 * 109.91678 * 94.60280 * 14 10 9 29 29 H 1.09008 * 109.50464 * 57.68645 * 15 9 7 30 30 H 1.08995 * 109.50295 * 177.80245 * 15 9 7 31 31 H 1.09000 * 109.46716 * 180.80621 * 16 15 9 32 32 H 1.09009 * 109.46427 * 60.83689 * 16 15 9 33 33 H 1.00904 * 110.99896 * 297.64576 * 17 16 15 34 34 H 1.09004 * 109.46309 * 178.24152 * 18 17 16 35 35 H 1.09005 * 109.46142 * 58.27887 * 18 17 16 36 36 H 1.09007 * 109.50398 * 299.23642 * 19 18 17 37 37 H 1.08996 * 109.53641 * 179.14182 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7463 -0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1031 1.6962 -1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0794 -1.1970 0.1042 9 6 1.2578 -2.4952 -0.1437 10 7 0.2206 -2.5835 0.8928 11 6 -0.5013 -3.8792 0.8145 12 6 -1.1333 -4.0187 2.2221 13 6 -0.0417 -3.4382 3.1502 14 6 0.8173 -2.5356 2.2452 15 6 2.2343 -3.6650 0.0068 16 6 3.2765 -3.6004 -1.1119 17 7 2.6025 -3.6666 -2.4149 18 6 1.6948 -2.5275 -2.6017 19 6 0.6054 -2.5601 -1.5274 20 1 -0.4849 0.8402 -0.0004 21 1 -1.2749 -3.8428 0.0474 22 1 0.1942 -4.6961 0.6224 23 1 -1.3230 -5.0658 2.4578 24 1 -2.0516 -3.4358 2.2952 25 1 0.5650 -4.2411 3.5690 26 1 -0.4950 -2.8512 3.9490 27 1 1.8410 -2.9086 2.2129 28 1 0.8070 -1.5119 2.6196 29 1 2.7338 -3.6000 0.9736 30 1 1.6880 -4.6058 -0.0586 31 1 3.9649 -4.4400 -1.0160 32 1 3.8319 -2.6653 -1.0374 33 1 2.1120 -4.5415 -2.5242 34 1 1.2343 -2.5880 -3.5879 35 1 2.2575 -1.5975 -2.5203 36 1 0.0334 -3.4837 -1.6170 37 1 -0.0596 -1.7063 -1.6566 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260290335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = -2.422861 kcal Electronic energy + Delta-G solvation = -17150.930458 eV Core-core repulsion = 14734.286329 eV Total energy + Delta-G solvation = -2416.644129 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78640 -37.98059 -34.77144 -32.78425 -31.48904 -29.55079 -29.26886 -26.90655 -23.87991 -23.51403 -22.26751 -21.21391 -20.21739 -17.81262 -17.24597 -16.61120 -16.36471 -15.59864 -15.40786 -14.92980 -14.61219 -14.34503 -14.14327 -13.52414 -13.17394 -13.06934 -12.81787 -12.61028 -12.53163 -12.37383 -12.15170 -11.88756 -11.78307 -11.74555 -11.62405 -11.15140 -10.99243 -10.45952 -10.38151 -9.14448 -8.41177 -7.79740 -6.00882 1.41441 1.44986 1.48853 2.50673 3.30406 3.59010 3.75606 4.01443 4.07991 4.20701 4.31541 4.40166 4.54851 4.58268 4.72584 4.77429 4.84263 4.88507 4.92156 5.02311 5.08819 5.12617 5.17027 5.26288 5.39756 5.41170 5.42836 5.49493 5.57770 5.78853 5.93496 6.23461 6.40903 6.70321 6.73811 6.91298 7.27602 7.66612 9.14302 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.015499 C = 0.010759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.763923 B = 1806.080304 C = 2601.752860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.049 3.951 3 Si 0.918 3.082 4 H -0.291 1.291 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.040 0.960 9 C 0.233 3.767 10 N -0.484 5.484 11 C 0.022 3.978 12 C -0.111 4.111 13 C -0.125 4.125 14 C 0.060 3.940 15 C -0.172 4.172 16 C 0.075 3.925 17 N -0.680 5.680 18 C 0.076 3.924 19 C -0.118 4.118 20 H 0.247 0.753 21 H 0.054 0.946 22 H 0.037 0.963 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.031 0.969 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.338 0.662 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.028 0.972 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -8.370 1.251 8.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.156 4.156 3 Si 0.746 3.254 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.058 0.942 9 C 0.144 3.856 10 N -0.207 5.207 11 C -0.106 4.106 12 C -0.149 4.149 13 C -0.163 4.163 14 C -0.069 4.069 15 C -0.213 4.213 16 C -0.055 4.055 17 N -0.309 5.309 18 C -0.054 4.054 19 C -0.158 4.158 20 H 0.057 0.943 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.104 0.896 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.519 -7.485 0.813 7.547 hybrid contribution 0.200 0.592 0.833 1.041 sum 0.719 -6.893 1.646 7.123 Atomic orbital electron populations 1.70279 1.06137 1.25105 1.47740 1.25367 0.95073 1.00235 0.94881 0.86284 0.78895 0.82034 0.78208 1.21715 1.20743 1.20276 1.20915 0.91869 0.91089 1.52298 0.94196 1.18703 0.86742 0.91584 0.88541 1.65092 1.26038 1.28126 1.01428 1.23304 0.97403 0.92467 0.97413 1.22380 0.97801 1.00788 0.93942 1.22398 0.97349 0.98690 0.97841 1.22402 0.96042 0.97725 0.90718 1.22820 0.99577 0.99396 0.99477 1.21793 0.95608 1.01313 0.86812 1.60746 1.33501 1.05350 1.31264 1.21769 0.92756 0.94086 0.96834 1.21960 0.98020 0.98873 0.96984 0.94324 0.92730 0.94504 0.89647 0.92204 0.90751 0.91582 0.95415 0.95031 0.93380 0.93045 0.90479 0.92603 0.84548 0.91383 0.92764 0.95372 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.79 11.10 21.45 0.24 -47.55 16 2 C 0.05 2.60 5.18 84.66 0.44 3.04 16 3 Si 0.92 43.26 29.54 68.60 2.03 45.29 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.52 -26.98 5.51 25.60 0.14 -26.84 16 8 H 0.04 2.12 6.70 -2.91 -0.02 2.10 16 9 C 0.23 10.58 0.06 2.86 0.00 10.58 16 10 N -0.48 -21.97 3.94 -837.44 -3.30 -25.27 16 11 C 0.02 0.84 5.33 86.65 0.46 1.30 16 12 C -0.11 -3.54 7.06 31.80 0.22 -3.31 16 13 C -0.12 -4.11 6.93 31.47 0.22 -3.89 16 14 C 0.06 2.54 5.62 86.45 0.49 3.03 16 15 C -0.17 -6.73 4.19 30.64 0.13 -6.60 16 16 C 0.08 2.72 6.34 86.32 0.55 3.27 16 17 N -0.68 -23.86 6.87 -514.01 -3.53 -27.39 16 18 C 0.08 3.02 6.35 86.32 0.55 3.57 16 19 C -0.12 -5.26 4.68 30.64 0.14 -5.11 16 20 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 21 H 0.05 2.13 7.62 -2.39 -0.02 2.12 16 22 H 0.04 1.33 5.56 -2.39 -0.01 1.31 16 23 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.03 1.19 5.52 -2.39 -0.01 1.18 16 28 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.94 6.09 -2.38 -0.01 1.93 16 30 H 0.05 1.87 5.92 -2.39 -0.01 1.86 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.06 2.29 6.69 -2.38 -0.02 2.27 16 33 H 0.34 10.42 8.86 -89.69 -0.79 9.62 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.05 2.47 7.31 -2.38 -0.02 2.45 16 36 H 0.03 1.16 6.88 -2.38 -0.02 1.14 16 37 H 0.05 2.66 6.71 -2.39 -0.02 2.65 16 Total: -1.00 -56.72 269.17 -0.97 -57.68 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.26 Total: 18.22 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 3.34 Total: -20.98 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -6.59 Total: -100.21 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -56.72 -0.97 -57.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.260 kcal (2) G-P(sol) polarization free energy of solvation -56.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds