Wall clock time and date at job start Mon Mar 30 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48504 * 109.47050 * 239.99858 * 3 2 1 5 5 H 1.48495 * 109.46957 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47046 * 120.00012 * 3 2 1 7 7 C 1.38809 * 120.00475 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.01062 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99473 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00030 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47418 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.53290 * 305.09794 * 11 10 9 13 13 C 1.53123 * 109.50068 * 65.19364 * 11 10 9 14 14 C 1.53123 * 109.16001 * 177.59552 * 13 11 10 15 15 C 1.53032 * 109.27911 * 302.34817 * 14 13 11 16 16 N 1.46848 * 109.52348 * 59.17573 * 15 14 13 17 17 C 1.46907 * 110.99958 * 174.16258 * 16 15 14 18 18 C 1.52995 * 117.49625 * 7.95442 * 17 16 15 19 19 C 1.52997 * 117.49512 * 299.29735 * 17 16 15 20 20 C 1.46842 * 111.20069 * 298.25721 * 16 15 14 21 21 H 0.97002 * 120.00051 * 359.97438 * 1 2 3 22 22 H 0.96998 * 120.00386 * 359.97438 * 9 7 2 23 23 H 1.08995 * 109.47246 * 59.99745 * 10 9 7 24 24 H 1.09003 * 109.47157 * 299.99565 * 10 9 7 25 25 H 1.09000 * 109.52561 * 297.50205 * 13 11 10 26 26 H 1.09007 * 109.52268 * 57.69364 * 13 11 10 27 27 H 1.08996 * 109.50416 * 182.40514 * 14 13 11 28 28 H 1.08997 * 109.49749 * 62.28489 * 14 13 11 29 29 H 1.09003 * 109.46473 * 299.16126 * 15 14 13 30 30 H 1.08991 * 109.45673 * 179.18830 * 15 14 13 31 31 H 1.08997 * 115.54753 * 153.62880 * 17 16 15 32 32 H 1.08995 * 117.50262 * 0.02562 * 18 17 16 33 33 H 1.09010 * 117.49535 * 145.02297 * 18 17 16 34 34 H 1.09002 * 117.50250 * 214.97684 * 19 17 16 35 35 H 1.09000 * 117.50132 * 359.97438 * 19 17 16 36 36 H 1.09002 * 109.46766 * 301.72784 * 20 16 15 37 37 H 1.09000 * 109.46420 * 181.75518 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0017 11 6 1.0638 -4.8197 0.0021 12 1 0.3777 -4.7124 0.8422 13 6 0.2719 -4.8156 -1.3085 14 6 -0.6777 -6.0168 -1.3256 15 6 0.1330 -7.3041 -1.1602 16 7 0.8717 -7.2594 0.1081 17 6 1.5520 -8.5356 0.3664 18 6 1.5459 -9.5785 -0.7529 19 6 0.6813 -9.7872 0.4929 20 6 1.8240 -6.1418 0.1289 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3880 0.0005 23 1 2.6840 -3.7141 0.8921 24 1 2.6853 -3.7149 -0.8879 25 1 -0.3053 -3.8939 -1.3825 26 1 0.9607 -4.8838 -2.1505 27 1 -1.2136 -6.0435 -2.2743 28 1 -1.3911 -5.9282 -0.5063 29 1 0.8368 -7.3990 -1.9872 30 1 -0.5416 -8.1602 -1.1576 31 1 2.4414 -8.4756 0.9937 32 1 1.0374 -9.3178 -1.6811 33 1 2.4312 -10.2052 -0.8618 34 1 0.9981 -10.5511 1.2031 35 1 -0.3963 -9.6638 0.3849 36 1 2.5199 -6.2420 -0.7041 37 1 2.3776 -6.1538 1.0678 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260300804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:31 Heat of formation + Delta-G solvation = 32.670689 kcal Electronic energy + Delta-G solvation = -15637.805743 eV Core-core repulsion = 13222.683385 eV Total energy + Delta-G solvation = -2415.122359 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.58224 -36.70910 -34.30629 -31.90637 -31.41859 -29.58192 -25.46039 -24.34331 -22.68418 -22.48012 -21.83985 -19.82922 -19.23219 -17.08665 -16.61352 -15.47850 -14.66219 -14.34308 -14.11709 -13.78636 -13.65873 -13.42956 -12.77552 -12.68350 -12.12716 -11.97559 -11.65043 -11.44526 -10.98511 -10.84641 -10.80511 -10.71460 -10.55013 -10.19467 -10.10886 -10.01785 -9.79554 -9.55593 -8.81589 -8.08115 -6.85812 -5.71513 -2.99552 3.47271 3.51175 3.52506 3.60057 3.97697 4.64176 4.72407 4.82713 4.90510 4.99827 5.16774 5.29554 5.38591 5.50167 5.55873 5.60376 5.62765 5.74288 5.79311 5.84324 5.98362 5.99737 6.03696 6.18443 6.24127 6.29070 6.41028 6.59889 6.74022 6.89603 7.00799 7.15292 7.21384 7.74010 8.47820 9.58702 10.17977 10.52994 11.51510 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.065358 B = 0.005134 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.309604 B = 5452.523218 C = 5689.500151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.159 3.841 11 C -0.090 4.090 12 H 0.078 0.922 13 C -0.112 4.112 14 C -0.118 4.118 15 C 0.055 3.945 16 N -0.506 5.506 17 C 0.026 3.974 18 C -0.223 4.223 19 C -0.173 4.173 20 C 0.067 3.933 21 H 0.255 0.745 22 H 0.384 0.616 23 H 0.018 0.982 24 H 0.016 0.984 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.034 0.966 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -18.043 -1.632 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.031 3.969 11 C -0.109 4.109 12 H 0.097 0.903 13 C -0.149 4.149 14 C -0.156 4.156 15 C -0.073 4.073 16 N -0.228 5.228 17 C -0.084 4.084 18 C -0.262 4.262 19 C -0.211 4.211 20 C -0.060 4.060 21 H 0.065 0.935 22 H 0.218 0.782 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.052 0.948 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.005 -17.806 -1.255 17.879 hybrid contribution 0.758 0.739 -0.644 1.239 sum 1.763 -17.067 -1.899 17.263 Atomic orbital electron populations 1.69648 1.05092 1.25681 1.57894 1.24721 0.95506 0.97613 1.03164 0.86271 0.78512 0.83620 0.77812 1.21336 1.21701 1.21306 1.19199 0.90995 0.84263 1.42537 0.91325 1.42348 1.05880 0.99862 1.89398 1.20620 0.93166 0.85549 0.97582 1.21344 0.97919 0.93104 0.98542 0.90336 1.21581 0.98051 0.98169 0.97137 1.21636 0.98282 0.94051 1.01630 1.22194 0.96690 0.98669 0.89718 1.61754 1.26450 1.01377 1.33234 1.22650 0.98839 0.85812 1.01088 1.23555 1.03084 1.05050 0.94496 1.23043 0.98449 0.99571 1.00040 1.22091 0.93156 0.89996 1.00806 0.93514 0.78175 0.96436 0.96572 0.90557 0.92677 0.91823 0.91198 0.94704 0.91240 0.86584 0.88358 0.89084 0.88705 0.88652 0.94782 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 2 C -0.01 -0.42 5.50 -17.44 -0.10 -0.51 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.98 5.35 -59.91 -0.32 -19.30 16 10 C 0.16 3.31 5.65 -4.04 -0.02 3.29 16 11 C -0.09 -1.55 2.39 -90.54 -0.22 -1.76 16 12 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 13 C -0.11 -1.84 5.13 -26.60 -0.14 -1.98 16 14 C -0.12 -1.61 6.09 -26.65 -0.16 -1.78 16 15 C 0.05 0.68 4.09 -3.84 -0.02 0.67 16 16 N -0.51 -6.75 4.86 -226.70 -1.10 -7.86 16 17 C 0.03 0.29 6.11 -67.71 -0.41 -0.12 16 18 C -0.22 -2.16 9.51 -26.70 -0.25 -2.41 16 19 C -0.17 -1.68 9.98 -26.70 -0.27 -1.94 16 20 C 0.07 0.97 4.70 -3.84 -0.02 0.96 16 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.38 10.44 6.88 -40.82 -0.28 10.16 16 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 1.44 7.27 -51.93 -0.38 1.06 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.03 0.43 7.35 -51.93 -0.38 0.05 16 30 H 0.07 0.79 6.49 -51.93 -0.34 0.45 16 31 H 0.12 1.21 7.99 -51.93 -0.41 0.80 16 32 H 0.10 0.97 5.91 -51.93 -0.31 0.67 16 33 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.96 7.55 -51.93 -0.39 0.57 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 LS Contribution 290.21 15.07 4.37 4.37 Total: -1.00 -30.28 290.21 -9.36 -39.64 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.26 Total: 5.97 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -1.75 Total: -12.58 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.70 Total: -55.12 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.28 -9.36 -39.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260300804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.315 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds