Wall clock time and date at job start Mon Mar 30 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99653 * 2 1 4 4 H 1.48508 * 109.46928 * 270.00216 * 3 2 1 5 5 H 1.48496 * 109.47407 * 29.99796 * 3 2 1 6 6 H 1.48503 * 109.46904 * 150.00464 * 3 2 1 7 7 C 1.37880 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99461 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00073 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47016 * 179.97438 * 9 7 2 11 11 C 1.47480 * 111.00405 * 265.97353 * 10 9 7 12 12 C 1.53515 * 87.93275 * 221.29694 * 11 10 9 13 13 N 1.46905 * 114.17241 * 139.66772 * 12 11 10 14 14 C 1.46839 * 111.00017 * 210.37295 * 13 12 11 15 15 C 1.53036 * 109.52327 * 174.16223 * 14 13 12 16 16 C 1.53123 * 109.28022 * 59.17483 * 15 14 13 17 17 C 1.53117 * 109.15954 * 302.34788 * 16 15 14 18 18 C 1.46842 * 110.99839 * 86.15718 * 13 12 11 19 19 C 1.47486 * 110.99952 * 169.99989 * 10 9 7 20 20 H 0.96994 * 120.00568 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47148 * 59.99823 * 9 7 2 22 22 H 1.09005 * 109.47175 * 300.00032 * 9 7 2 23 23 H 1.09005 * 113.47310 * 336.06042 * 11 10 9 24 24 H 1.08990 * 113.48150 * 106.52863 * 11 10 9 25 25 H 1.08994 * 114.17159 * 272.37520 * 12 11 10 26 26 H 1.09004 * 109.46275 * 294.17041 * 14 13 12 27 27 H 1.08997 * 109.46887 * 54.14440 * 14 13 12 28 28 H 1.09003 * 109.50270 * 299.23382 * 15 14 13 29 29 H 1.09000 * 109.50782 * 179.11785 * 15 14 13 30 30 H 1.08999 * 109.51859 * 182.44480 * 16 15 14 31 31 H 1.08999 * 109.51901 * 62.25406 * 16 15 14 32 32 H 1.09009 * 109.50107 * 297.71219 * 17 16 15 33 33 H 1.08992 * 109.50295 * 177.59812 * 17 16 15 34 34 H 1.08999 * 109.46128 * 305.85689 * 18 13 12 35 35 H 1.08998 * 109.46376 * 65.82579 * 18 13 12 36 36 H 1.09005 * 113.47586 * 253.47470 * 19 10 9 37 37 H 1.08997 * 113.47701 * 23.87649 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 4.2692 -3.0447 1.3724 12 6 5.5425 -3.7148 0.8373 13 7 6.7061 -3.5910 1.7254 14 6 7.9559 -3.5665 0.9549 15 6 9.1313 -3.2914 1.8955 16 6 9.1902 -4.3861 2.9646 17 6 7.8590 -4.4227 3.7203 18 6 6.7205 -4.6650 2.7267 19 6 5.4558 -2.6252 -0.2406 20 1 -0.4851 0.8399 -0.0004 21 1 3.8752 -0.6803 0.8888 22 1 3.8746 -0.6799 -0.8912 23 1 4.4670 -2.2349 2.0747 24 1 3.5285 -3.7533 1.7429 25 1 5.3904 -4.7268 0.4622 26 1 8.1000 -4.5299 0.4659 27 1 7.9026 -2.7811 0.2011 28 1 8.9948 -2.3219 2.3746 29 1 10.0606 -3.2888 1.3258 30 1 9.9994 -4.1705 3.6624 31 1 9.3656 -5.3509 2.4887 32 1 7.7025 -3.4708 4.2280 33 1 7.8792 -5.2282 4.4542 34 1 5.7698 -4.6773 3.2597 35 1 6.8703 -5.6232 2.2294 36 1 5.7207 -2.9783 -1.2373 37 1 5.9701 -1.7032 0.0302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260384964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:23 Heat of formation + Delta-G solvation = 11.171550 kcal Electronic energy + Delta-G solvation = -15761.048707 eV Core-core repulsion = 13344.994075 eV Total energy + Delta-G solvation = -2416.054631 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31258 -38.96483 -35.11856 -33.81764 -31.76114 -31.17977 -27.30509 -26.81324 -24.69856 -23.71241 -22.62096 -20.58650 -20.57877 -18.95714 -17.65452 -16.70294 -16.31989 -16.01649 -15.47834 -15.25065 -14.96598 -14.66869 -14.49690 -14.24592 -13.74142 -13.42457 -13.37164 -13.09001 -12.94631 -12.27164 -12.10601 -12.05336 -11.76886 -11.61962 -11.55715 -11.41219 -11.11507 -11.09432 -10.80335 -9.66577 -9.27984 -8.31447 -6.35818 1.32578 1.34650 1.45604 2.32176 2.80638 3.01125 3.35246 3.42529 3.92565 3.99320 4.05278 4.14126 4.35721 4.36479 4.47098 4.51215 4.62292 4.65973 4.68687 4.72392 4.76713 4.81761 4.88707 4.97766 5.04717 5.07946 5.14646 5.25832 5.33240 5.44335 5.52064 5.69589 5.98093 6.16056 6.21041 6.54374 6.69648 7.27669 8.85823 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.046894 B = 0.005836 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.949599 B = 4796.591876 C = 4944.494236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.521 4.521 8 H 0.031 0.969 9 C 0.143 3.857 10 N -0.488 5.488 11 C 0.022 3.978 12 C 0.069 3.931 13 N -0.537 5.537 14 C 0.053 3.947 15 C -0.114 4.114 16 C -0.118 4.118 17 C -0.113 4.113 18 C 0.054 3.946 19 C 0.008 3.992 20 H 0.268 0.732 21 H 0.003 0.997 22 H 0.026 0.974 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.089 0.911 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.341 -7.512 5.453 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.559 4.559 8 H 0.049 0.951 9 C 0.015 3.985 10 N -0.211 5.211 11 C -0.108 4.108 12 C -0.039 4.039 13 N -0.263 5.263 14 C -0.075 4.075 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.151 4.151 18 C -0.074 4.074 19 C -0.121 4.121 20 H 0.077 0.923 21 H 0.020 0.980 22 H 0.044 0.956 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.664 -7.293 5.250 22.533 hybrid contribution -0.082 0.532 -0.033 0.540 sum 20.582 -6.761 5.217 22.284 Atomic orbital electron populations 1.70053 1.08199 1.28270 1.52373 1.25913 0.95678 1.03303 0.94107 0.85658 0.79276 0.78269 0.79412 1.18763 1.20351 1.17527 1.21213 0.91168 0.93193 1.50319 0.95085 1.20447 0.94860 0.87680 0.95508 1.68789 1.13421 1.21404 1.17470 1.23733 0.95946 0.99207 0.91925 1.23058 0.90336 0.97431 0.93123 1.62109 1.01897 1.46886 1.15388 1.22122 0.88962 1.00460 0.95928 1.21587 0.97056 0.99378 0.97157 1.21575 0.97268 0.98830 0.97889 1.21575 0.93873 1.02375 0.97303 1.22119 0.99858 0.91676 0.93758 1.23863 0.90234 0.98434 0.99591 0.92281 0.97965 0.95608 0.91910 0.91527 0.90196 0.94545 0.90978 0.92103 0.90023 0.90648 0.91808 0.92094 0.90146 0.91521 0.94519 0.89310 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 2 C 0.01 0.44 5.47 84.66 0.46 0.90 16 3 Si 0.95 45.07 27.47 68.60 1.88 46.96 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 7 C -0.52 -31.73 9.94 25.60 0.25 -31.48 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 9 C 0.14 7.19 3.64 85.56 0.31 7.50 16 10 N -0.49 -21.42 6.32 -932.44 -5.89 -27.31 16 11 C 0.02 0.82 7.52 83.58 0.63 1.45 16 12 C 0.07 2.08 3.52 45.37 0.16 2.24 16 13 N -0.54 -13.61 4.64 -870.10 -4.04 -17.65 16 14 C 0.05 1.10 5.30 86.33 0.46 1.56 16 15 C -0.11 -1.93 6.09 30.65 0.19 -1.74 16 16 C -0.12 -1.77 6.00 30.67 0.18 -1.58 16 17 C -0.11 -1.97 6.09 30.65 0.19 -1.79 16 18 C 0.05 1.16 5.46 86.33 0.47 1.63 16 19 C 0.01 0.27 6.15 83.58 0.51 0.78 16 20 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 21 H 0.00 0.13 6.36 -2.39 -0.02 0.11 16 22 H 0.03 1.27 7.51 -2.38 -0.02 1.25 16 23 H 0.06 2.50 7.42 -2.38 -0.02 2.48 16 24 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.08 2.32 8.13 -2.39 -0.02 2.30 16 26 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.07 1.56 6.86 -2.39 -0.02 1.54 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 35 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 37 H 0.07 2.31 7.66 -2.39 -0.02 2.29 16 Total: -1.00 -68.20 288.18 -2.98 -71.18 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.95 Total: 7.97 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 3.82 Total: -20.53 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -9.63 Total: -105.58 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -68.20 -2.98 -71.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.351 kcal (2) G-P(sol) polarization free energy of solvation -68.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds