Wall clock time and date at job start Mon Mar 30 2020 03:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48504 * 109.46986 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47215 * 239.99767 * 3 2 1 6 6 H 1.48498 * 109.47285 * 119.99669 * 3 2 1 7 7 C 1.37884 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99707 * 174.35383 * 7 2 1 9 9 C 1.50692 * 120.00008 * 354.35224 * 7 2 1 10 10 C 1.53004 * 110.43837 * 184.11328 * 9 7 2 11 11 N 1.46898 * 109.47053 * 66.23830 * 10 9 7 12 12 C 1.54992 * 110.48987 * 306.80044 * 9 7 2 13 13 C 1.55199 * 104.93272 * 121.17070 * 12 9 7 14 14 N 1.47093 * 103.52485 * 23.99533 * 13 12 9 15 15 C 1.45663 * 116.53886 * 197.57355 * 14 13 12 16 16 C 1.53628 * 107.79855 * 182.68661 * 15 14 13 17 17 C 1.52813 * 110.69845 * 302.62245 * 16 15 14 18 18 C 1.53751 * 111.13338 * 53.38649 * 17 16 15 19 19 C 1.48731 * 103.70084 * 317.76762 * 14 13 12 20 20 H 1.08995 * 110.34257 * 286.14323 * 19 14 13 21 21 H 0.96994 * 119.99584 * 174.31682 * 1 2 3 22 22 H 1.08997 * 109.47070 * 186.24628 * 10 9 7 23 23 H 1.09000 * 109.46735 * 306.24242 * 10 9 7 24 24 H 1.00898 * 111.00164 * 182.24850 * 11 10 9 25 25 H 1.00895 * 111.00403 * 306.20762 * 11 10 9 26 26 H 1.08997 * 110.34725 * 240.03360 * 12 9 7 27 27 H 1.08996 * 110.34335 * 2.31007 * 12 9 7 28 28 H 1.08998 * 110.61050 * 265.48550 * 13 12 9 29 29 H 1.08995 * 110.74154 * 142.57130 * 13 12 9 30 30 H 1.09003 * 109.79075 * 302.25877 * 15 14 13 31 31 H 1.08997 * 109.79502 * 63.04995 * 15 14 13 32 32 H 1.09000 * 109.22885 * 62.93962 * 16 15 14 33 33 H 1.09000 * 109.22812 * 182.34896 * 16 15 14 34 34 H 1.09001 * 109.24904 * 174.04063 * 17 16 15 35 35 H 1.09008 * 109.25068 * 293.49790 * 17 16 15 36 36 H 1.09001 * 110.33503 * 185.08360 * 18 17 16 37 37 H 1.08998 * 109.38522 * 64.09220 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1030 1.6964 -1.2124 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0806 -1.1964 -0.0915 9 6 1.2566 -2.4959 0.1295 10 6 2.2356 -3.6692 0.2076 11 7 3.0068 -3.5813 1.4548 12 6 0.3350 -2.4710 1.3755 13 6 -1.0947 -2.7082 0.8202 14 7 -0.8581 -3.4096 -0.4509 15 6 -1.9629 -3.4273 -1.3999 16 6 -1.5259 -4.2612 -2.6139 17 6 -0.2529 -3.6865 -3.2339 18 6 0.8547 -3.5282 -2.1793 19 6 0.2922 -2.6794 -1.0473 20 1 -0.0301 -1.7098 -1.4268 21 1 -0.4849 -0.8359 -0.0832 22 1 1.6808 -4.6072 0.1887 23 1 2.9157 -3.6320 -0.6435 24 1 3.6864 -4.3248 1.5129 25 1 3.4496 -2.6790 1.5434 26 1 0.6103 -3.2677 2.0665 27 1 0.3933 -1.5017 1.8705 28 1 -1.6011 -1.7588 0.6461 29 1 -1.6744 -3.3319 1.5006 30 1 -2.8397 -3.8804 -0.9372 31 1 -2.1959 -2.4100 -1.7143 32 1 -1.3392 -5.2870 -2.2963 33 1 -2.3217 -4.2552 -3.3588 34 1 0.0947 -4.3527 -4.0235 35 1 -0.4711 -2.7072 -3.6601 36 1 1.7242 -3.0354 -2.6142 37 1 1.1363 -4.5106 -1.8002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260949643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:42 Heat of formation + Delta-G solvation = 4.575491 kcal Electronic energy + Delta-G solvation = -17173.504954 eV Core-core repulsion = 14757.164296 eV Total energy + Delta-G solvation = -2416.340658 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62005 -35.45867 -33.35641 -32.26542 -30.48861 -28.14248 -27.13166 -24.01132 -22.82201 -22.30945 -20.72785 -19.80801 -18.10555 -16.78850 -15.30865 -14.49030 -14.25542 -14.01634 -13.81851 -13.56574 -13.53257 -12.85720 -12.52973 -12.22370 -11.94354 -11.75271 -11.21889 -10.84700 -10.78300 -10.48364 -10.20234 -10.17546 -10.08891 -9.94285 -9.69973 -9.52229 -9.20007 -8.37694 -8.30203 -7.73964 -7.46169 -6.21083 -4.05561 3.42599 3.43999 3.62199 4.52843 4.85651 5.26068 5.34876 5.41987 5.47080 5.62816 5.88284 6.01119 6.05350 6.11814 6.17383 6.27099 6.30647 6.37283 6.40681 6.51953 6.55122 6.62655 6.69037 6.76102 6.83892 7.05040 7.18975 7.27776 7.45621 7.64743 7.75299 8.07337 8.16456 8.28393 8.38913 8.45924 8.91988 9.66070 11.05415 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025423 B = 0.012440 C = 0.010981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.098466 B = 2250.192008 C = 2549.324080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.027 3.973 3 Si 1.058 2.942 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.583 4.583 8 H 0.045 0.955 9 C 0.070 3.930 10 C 0.093 3.907 11 N -0.846 5.846 12 C -0.100 4.100 13 C 0.037 3.963 14 N -0.530 5.530 15 C 0.053 3.947 16 C -0.108 4.108 17 C -0.120 4.120 18 C -0.099 4.099 19 C 0.061 3.939 20 H 0.066 0.934 21 H 0.284 0.716 22 H 0.052 0.948 23 H 0.008 0.992 24 H 0.317 0.683 25 H 0.345 0.655 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 -6.089 -2.862 6.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.178 4.178 3 Si 0.887 3.113 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.621 4.621 8 H 0.064 0.936 9 C 0.068 3.932 10 C -0.038 4.038 11 N -0.375 5.375 12 C -0.139 4.139 13 C -0.091 4.091 14 N -0.255 5.255 15 C -0.076 4.076 16 C -0.145 4.145 17 C -0.157 4.157 18 C -0.137 4.137 19 C -0.047 4.047 20 H 0.084 0.916 21 H 0.101 0.899 22 H 0.071 0.929 23 H 0.027 0.973 24 H 0.127 0.873 25 H 0.159 0.841 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.960 -5.085 -2.329 5.674 hybrid contribution 0.688 -0.621 -0.980 1.349 sum -0.272 -5.706 -3.310 6.602 Atomic orbital electron populations 1.70836 1.06993 1.32814 1.45322 1.25590 0.96497 1.02069 0.93671 0.83717 0.75068 0.76107 0.76416 1.20970 1.21748 1.21467 1.21827 0.93959 0.91410 1.54944 0.93622 1.18763 0.91183 0.93221 0.89998 1.21673 0.95077 0.98599 0.88420 1.58743 1.31528 1.07880 1.39342 1.22624 0.91634 1.00779 0.98870 1.22949 0.99260 0.95837 0.91009 1.63907 1.06383 1.51564 1.03636 1.21943 0.94234 0.98105 0.93317 1.21506 0.96935 0.99808 0.96294 1.21609 0.95924 1.00167 0.98046 1.21464 0.96823 0.99950 0.95478 1.22821 0.91580 0.94608 0.95718 0.91580 0.89901 0.92949 0.97337 0.87273 0.84074 0.92546 0.91580 0.93640 0.92750 0.92057 0.95407 0.91872 0.92708 0.92957 0.92923 0.92046 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 12.25 55.43 0.68 -25.60 16 2 C 0.03 0.72 4.65 -17.82 -0.08 0.64 16 3 Si 1.06 24.44 29.91 -169.99 -5.08 19.35 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.58 -15.30 7.32 -34.44 -0.25 -15.56 16 8 H 0.05 1.20 7.48 -52.49 -0.39 0.81 16 9 C 0.07 1.65 0.51 -154.48 -0.08 1.57 16 10 C 0.09 1.96 4.40 -3.82 -0.02 1.94 16 11 N -0.85 -16.34 8.82 -10.37 -0.09 -16.44 16 12 C -0.10 -2.40 5.29 -24.51 -0.13 -2.53 16 13 C 0.04 0.83 6.17 -2.55 -0.02 0.82 16 14 N -0.53 -11.19 4.85 -224.48 -1.09 -12.28 16 15 C 0.05 0.99 5.87 -4.17 -0.02 0.96 16 16 C -0.11 -1.73 6.07 -26.50 -0.16 -1.89 16 17 C -0.12 -2.04 5.92 -26.44 -0.16 -2.19 16 18 C -0.10 -1.96 4.61 -26.72 -0.12 -2.08 16 19 C 0.06 1.39 1.40 -66.94 -0.09 1.30 16 20 H 0.07 1.75 5.53 -51.93 -0.29 1.46 16 21 H 0.28 7.83 2.00 -40.82 -0.08 7.75 16 22 H 0.05 1.11 7.50 -51.93 -0.39 0.72 16 23 H 0.01 0.18 7.62 -51.93 -0.40 -0.22 16 24 H 0.32 5.13 9.08 -39.29 -0.36 4.78 16 25 H 0.35 6.96 7.92 -39.29 -0.31 6.65 16 26 H 0.06 1.32 7.30 -51.93 -0.38 0.94 16 27 H 0.07 1.76 6.72 -51.93 -0.35 1.41 16 28 H 0.05 1.10 6.38 -51.93 -0.33 0.77 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.56 7.99 -51.93 -0.41 0.14 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.16 6.74 -51.93 -0.35 0.81 16 LS Contribution 268.59 15.07 4.05 4.05 Total: -1.00 -28.00 268.59 -8.46 -36.47 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.79 Total: 11.47 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -1.13 Total: -17.03 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.50 Total: -54.32 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.35 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.00 -8.46 -36.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260949643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.043 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds