Wall clock time and date at job start Mon Mar 30 2020 03:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48504 * 109.46986 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47215 * 239.99767 * 3 2 1 6 6 H 1.48498 * 109.47285 * 119.99669 * 3 2 1 7 7 C 1.37884 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99707 * 174.35383 * 7 2 1 9 9 C 1.50692 * 120.00008 * 354.35224 * 7 2 1 10 10 C 1.53004 * 110.43837 * 184.11328 * 9 7 2 11 11 N 1.46898 * 109.47053 * 66.23830 * 10 9 7 12 12 C 1.54992 * 110.48987 * 306.80044 * 9 7 2 13 13 C 1.55199 * 104.93272 * 121.17070 * 12 9 7 14 14 N 1.47093 * 103.52485 * 23.99533 * 13 12 9 15 15 C 1.45663 * 116.53886 * 197.57355 * 14 13 12 16 16 C 1.53628 * 107.79855 * 182.68661 * 15 14 13 17 17 C 1.52813 * 110.69845 * 302.62245 * 16 15 14 18 18 C 1.53751 * 111.13338 * 53.38649 * 17 16 15 19 19 C 1.48731 * 103.70084 * 317.76762 * 14 13 12 20 20 H 1.08995 * 110.34257 * 286.14323 * 19 14 13 21 21 H 0.96994 * 119.99584 * 174.31682 * 1 2 3 22 22 H 1.08997 * 109.47070 * 186.24628 * 10 9 7 23 23 H 1.09000 * 109.46735 * 306.24242 * 10 9 7 24 24 H 1.00898 * 111.00164 * 182.24850 * 11 10 9 25 25 H 1.00895 * 111.00403 * 306.20762 * 11 10 9 26 26 H 1.08997 * 110.34725 * 240.03360 * 12 9 7 27 27 H 1.08996 * 110.34335 * 2.31007 * 12 9 7 28 28 H 1.08998 * 110.61050 * 265.48550 * 13 12 9 29 29 H 1.08995 * 110.74154 * 142.57130 * 13 12 9 30 30 H 1.09003 * 109.79075 * 302.25877 * 15 14 13 31 31 H 1.08997 * 109.79502 * 63.04995 * 15 14 13 32 32 H 1.09000 * 109.22885 * 62.93962 * 16 15 14 33 33 H 1.09000 * 109.22812 * 182.34896 * 16 15 14 34 34 H 1.09001 * 109.24904 * 174.04063 * 17 16 15 35 35 H 1.09008 * 109.25068 * 293.49790 * 17 16 15 36 36 H 1.09001 * 110.33503 * 185.08360 * 18 17 16 37 37 H 1.08998 * 109.38522 * 64.09220 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1030 1.6964 -1.2124 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0806 -1.1964 -0.0915 9 6 1.2566 -2.4959 0.1295 10 6 2.2356 -3.6692 0.2076 11 7 3.0068 -3.5813 1.4548 12 6 0.3350 -2.4710 1.3755 13 6 -1.0947 -2.7082 0.8202 14 7 -0.8581 -3.4096 -0.4509 15 6 -1.9629 -3.4273 -1.3999 16 6 -1.5259 -4.2612 -2.6139 17 6 -0.2529 -3.6865 -3.2339 18 6 0.8547 -3.5282 -2.1793 19 6 0.2922 -2.6794 -1.0473 20 1 -0.0301 -1.7098 -1.4268 21 1 -0.4849 -0.8359 -0.0832 22 1 1.6808 -4.6072 0.1887 23 1 2.9157 -3.6320 -0.6435 24 1 3.6864 -4.3248 1.5129 25 1 3.4496 -2.6790 1.5434 26 1 0.6103 -3.2677 2.0665 27 1 0.3933 -1.5017 1.8705 28 1 -1.6011 -1.7588 0.6461 29 1 -1.6744 -3.3319 1.5006 30 1 -2.8397 -3.8804 -0.9372 31 1 -2.1959 -2.4100 -1.7143 32 1 -1.3392 -5.2870 -2.2963 33 1 -2.3217 -4.2552 -3.3588 34 1 0.0947 -4.3527 -4.0235 35 1 -0.4711 -2.7072 -3.6601 36 1 1.7242 -3.0354 -2.6142 37 1 1.1363 -4.5106 -1.8002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260949643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:42 Heat of formation + Delta-G solvation = -14.868067 kcal Electronic energy + Delta-G solvation = -17174.348090 eV Core-core repulsion = 14757.164296 eV Total energy + Delta-G solvation = -2417.183794 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35201 -37.08893 -34.99920 -34.13810 -32.14493 -29.84198 -28.87277 -25.95599 -24.52910 -23.87949 -22.40581 -21.53888 -19.82674 -18.67741 -16.98215 -16.13273 -15.90253 -15.72540 -15.58621 -15.33715 -15.05164 -14.43584 -14.27458 -13.87061 -13.68689 -13.37105 -12.90291 -12.65252 -12.54243 -12.11471 -11.98938 -11.88522 -11.83541 -11.59677 -11.36794 -11.09980 -10.96283 -10.35255 -10.29280 -9.35303 -9.24569 -8.30825 -6.16942 1.53708 1.59594 1.77639 2.61891 3.21051 3.28217 3.86923 3.93092 4.03640 4.05230 4.27012 4.34193 4.45509 4.56193 4.57932 4.62934 4.73271 4.76376 4.81469 4.88660 5.03388 5.04201 5.13999 5.17143 5.25225 5.34269 5.36266 5.54751 5.60690 5.74462 5.96072 6.25068 6.42227 6.47618 6.50805 6.81931 6.91467 7.62007 8.97502 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025423 B = 0.012440 C = 0.010981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.098466 B = 2250.192008 C = 2549.324080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.019 4.019 3 Si 1.098 2.902 4 H -0.293 1.293 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.588 4.588 8 H 0.041 0.959 9 C 0.058 3.942 10 C 0.104 3.896 11 N -0.847 5.847 12 C -0.093 4.093 13 C 0.042 3.958 14 N -0.522 5.522 15 C 0.047 3.953 16 C -0.101 4.101 17 C -0.118 4.118 18 C -0.096 4.096 19 C 0.066 3.934 20 H 0.023 0.977 21 H 0.284 0.716 22 H 0.057 0.943 23 H 0.008 0.992 24 H 0.338 0.662 25 H 0.341 0.659 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.019 0.981 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.005 0.995 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 -7.818 -3.572 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.219 4.219 3 Si 0.923 3.077 4 H -0.220 1.220 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.626 4.626 8 H 0.059 0.941 9 C 0.057 3.943 10 C -0.027 4.027 11 N -0.377 5.377 12 C -0.132 4.132 13 C -0.087 4.087 14 N -0.246 5.246 15 C -0.082 4.082 16 C -0.138 4.138 17 C -0.155 4.155 18 C -0.134 4.134 19 C -0.043 4.043 20 H 0.041 0.959 21 H 0.100 0.900 22 H 0.075 0.925 23 H 0.026 0.974 24 H 0.150 0.850 25 H 0.154 0.846 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.023 0.977 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.691 -6.846 -3.040 7.523 hybrid contribution 0.600 -0.103 -0.728 0.949 sum -0.091 -6.949 -3.768 7.906 Atomic orbital electron populations 1.70874 1.07931 1.33188 1.47336 1.26682 0.96643 1.05185 0.93426 0.83175 0.74263 0.72842 0.77422 1.21957 1.20310 1.19986 1.22111 0.93878 0.92726 1.53911 0.94070 1.18865 0.91876 0.93303 0.90283 1.21479 0.94664 0.97413 0.89128 1.58663 1.32281 1.08406 1.38343 1.22457 0.93038 0.98766 0.98898 1.22860 0.98239 0.95278 0.92283 1.63972 1.06983 1.50168 1.03491 1.22139 0.94248 0.97711 0.94086 1.21503 0.97240 0.99495 0.95597 1.21613 0.95554 1.00405 0.97967 1.21424 0.97368 0.99452 0.95140 1.22606 0.92016 0.93488 0.96206 0.95896 0.90029 0.92472 0.97366 0.84955 0.84611 0.92092 0.95191 0.96281 0.90472 0.89956 0.97688 0.90584 0.89765 0.89811 0.94285 0.93116 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.21 12.25 21.45 0.26 -55.94 16 2 C -0.02 -1.08 4.65 84.66 0.39 -0.68 16 3 Si 1.10 49.99 29.91 68.60 2.05 52.04 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.59 -31.24 7.32 25.60 0.19 -31.05 16 8 H 0.04 2.17 7.48 -2.91 -0.02 2.15 16 9 C 0.06 2.75 0.51 -52.16 -0.03 2.72 16 10 C 0.10 4.25 4.40 86.30 0.38 4.63 16 11 N -0.85 -31.49 8.82 -186.72 -1.65 -33.14 16 12 C -0.09 -4.48 5.29 32.03 0.17 -4.32 16 13 C 0.04 1.86 6.17 87.02 0.54 2.40 16 14 N -0.52 -21.53 4.85 -864.14 -4.19 -25.72 16 15 C 0.05 1.66 5.87 86.75 0.51 2.17 16 16 C -0.10 -2.91 6.07 30.74 0.19 -2.72 16 17 C -0.12 -3.72 5.92 30.79 0.18 -3.53 16 18 C -0.10 -3.64 4.61 30.60 0.14 -3.50 16 19 C 0.07 2.99 1.40 44.40 0.06 3.05 16 20 H 0.02 1.26 5.53 -2.39 -0.01 1.24 16 21 H 0.28 16.22 2.00 -92.71 -0.19 16.03 16 22 H 0.06 2.29 7.50 -2.39 -0.02 2.27 16 23 H 0.01 0.33 7.62 -2.39 -0.02 0.32 16 24 H 0.34 10.19 9.08 -89.70 -0.81 9.38 16 25 H 0.34 13.43 7.92 -89.70 -0.71 12.72 16 26 H 0.06 2.82 7.30 -2.39 -0.02 2.80 16 27 H 0.03 1.63 6.72 -2.39 -0.02 1.61 16 28 H 0.02 0.96 6.38 -2.39 -0.02 0.94 16 29 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.00 0.20 7.99 -2.39 -0.02 0.18 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.04 1.32 8.14 -2.38 -0.02 1.31 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.53 6.74 -2.39 -0.02 2.52 16 Total: -1.00 -60.99 268.59 -0.68 -61.68 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.12 Total: 31.92 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 2.72 Total: -30.83 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -5.58 Total: -114.81 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Total: -60.99 -0.68 -61.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260949643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.809 kcal (2) G-P(sol) polarization free energy of solvation -60.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds