Wall clock time and date at job start Mon Mar 30 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99927 * 2 1 4 4 H 1.48499 * 109.47065 * 273.10014 * 3 2 1 5 5 H 1.48492 * 109.47147 * 33.10116 * 3 2 1 6 6 H 1.48501 * 109.46961 * 153.10204 * 3 2 1 7 7 C 1.37874 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00244 * 353.19394 * 7 2 1 9 9 C 1.50702 * 120.00057 * 173.19096 * 7 2 1 10 10 H 1.09005 * 109.47133 * 354.29381 * 9 7 2 11 11 C 1.53002 * 109.47517 * 234.29635 * 9 7 2 12 12 C 1.54893 * 110.48596 * 306.98699 * 11 9 7 13 13 C 1.55240 * 102.58614 * 156.67124 * 12 11 9 14 14 C 1.54259 * 104.23285 * 322.08714 * 13 12 11 15 15 C 1.53866 * 106.60189 * 23.60882 * 14 13 12 16 16 N 1.46901 * 109.47249 * 114.29396 * 9 7 2 17 17 C 1.47479 * 110.99778 * 38.47573 * 16 9 7 18 18 C 1.53515 * 87.93402 * 221.29493 * 17 16 9 19 19 N 1.46894 * 114.16842 * 139.66803 * 18 17 16 20 20 C 1.47471 * 111.00153 * 302.50541 * 16 9 7 21 21 H 0.96998 * 120.00033 * 359.97438 * 1 2 3 22 22 H 1.08998 * 110.43674 * 184.44498 * 11 9 7 23 23 H 1.08994 * 110.75661 * 275.07112 * 12 11 9 24 24 H 1.09005 * 110.75237 * 38.43568 * 12 11 9 25 25 H 1.09003 * 110.46670 * 203.38889 * 13 12 11 26 26 H 1.08999 * 110.57866 * 80.83785 * 13 12 11 27 27 H 1.09007 * 110.03128 * 264.32314 * 14 13 12 28 28 H 1.09000 * 110.07169 * 142.92015 * 14 13 12 29 29 H 1.09001 * 110.03220 * 240.71494 * 15 14 13 30 30 H 1.09004 * 110.07580 * 119.30923 * 15 14 13 31 31 H 1.09007 * 113.47699 * 336.06107 * 17 16 9 32 32 H 1.09005 * 113.48070 * 106.52531 * 17 16 9 33 33 H 1.08996 * 114.34037 * 272.36510 * 18 17 16 34 34 H 1.00903 * 111.00358 * 86.16642 * 19 18 17 35 35 H 1.00911 * 110.99944 * 210.11555 * 19 18 17 36 36 H 1.09004 * 113.47772 * 253.47038 * 20 16 9 37 37 H 1.09003 * 113.47671 * 23.87620 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4310 2.0843 -1.3980 5 1 1.4809 2.6328 0.7646 6 1 3.5780 1.4221 0.6334 7 6 2.0045 -1.1940 -0.0005 8 1 1.4702 -2.1261 0.1099 9 6 3.5035 -1.1986 -0.1553 10 1 3.8514 -0.1849 -0.3542 11 6 3.8932 -2.1094 -1.3212 12 6 3.2612 -3.5128 -1.1475 13 6 3.2285 -4.0516 -2.6031 14 6 2.8718 -2.8171 -3.4565 15 6 3.2944 -1.5823 -2.6416 16 7 4.1220 -1.6946 1.0814 17 6 3.3339 -2.7985 1.6606 18 6 3.5801 -2.1756 3.0419 19 7 2.4133 -2.2098 3.9337 20 6 3.7199 -0.8745 2.2392 21 1 -0.4850 0.8400 0.0004 22 1 4.9778 -2.1863 -1.3981 23 1 3.8860 -4.1421 -0.5138 24 1 2.2526 -3.4346 -0.7416 25 1 2.4640 -4.8215 -2.7074 26 1 4.2047 -4.4437 -2.8885 27 1 1.7985 -2.7909 -3.6448 28 1 3.4156 -2.8454 -4.4008 29 1 2.4262 -0.9567 -2.4344 30 1 4.0437 -1.0109 -3.1896 31 1 2.2861 -2.7882 1.3601 32 1 3.7991 -3.7763 1.5359 33 1 4.5007 -2.5033 3.5248 34 1 2.3678 -3.0835 4.4364 35 1 2.4214 -1.4266 4.5699 36 1 4.5124 -0.2216 2.6051 37 1 2.7757 -0.3500 2.0929 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:11 Heat of formation + Delta-G solvation = 11.635557 kcal Electronic energy + Delta-G solvation = -16785.391927 eV Core-core repulsion = 14369.357417 eV Total energy + Delta-G solvation = -2416.034510 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24857 -38.54457 -34.99569 -33.74967 -31.51253 -29.45334 -27.87302 -26.73668 -26.35418 -22.87188 -21.23305 -20.34342 -19.99607 -18.75631 -17.12287 -16.77899 -16.64339 -16.28038 -15.70672 -15.40828 -14.80304 -14.66832 -14.04104 -13.92998 -13.61462 -13.07970 -12.79987 -12.53559 -12.48775 -12.08788 -11.90796 -11.75999 -11.67858 -11.23603 -11.14590 -11.04234 -10.89177 -10.72644 -10.63046 -9.48406 -9.32133 -8.22629 -6.23164 1.27176 1.32758 1.39323 2.32810 3.07746 3.50337 3.67755 3.91281 3.96958 4.00922 4.11772 4.34712 4.56982 4.65625 4.74314 4.78272 4.88788 4.92876 4.94176 4.98994 5.06706 5.12777 5.22033 5.27327 5.31050 5.37532 5.45501 5.55043 5.63960 5.68449 5.77231 5.89565 6.39137 6.42778 6.53036 6.74720 6.84982 7.41818 8.92152 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.020196 B = 0.014776 C = 0.010378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.050717 B = 1894.489709 C = 2697.260613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.034 3.966 3 Si 0.910 3.090 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.249 1.249 7 C -0.492 4.492 8 H 0.055 0.945 9 C 0.142 3.858 10 H 0.031 0.969 11 C -0.066 4.066 12 C -0.107 4.107 13 C -0.117 4.117 14 C -0.114 4.114 15 C -0.119 4.119 16 N -0.482 5.482 17 C 0.020 3.980 18 C 0.064 3.936 19 N -0.844 5.844 20 C 0.003 3.997 21 H 0.260 0.740 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.349 0.651 35 H 0.346 0.654 36 H 0.067 0.933 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 -5.005 1.234 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.165 4.165 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.173 1.173 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.035 3.965 10 H 0.049 0.951 11 C -0.086 4.086 12 C -0.145 4.145 13 C -0.155 4.155 14 C -0.152 4.152 15 C -0.157 4.157 16 N -0.204 5.204 17 C -0.110 4.110 18 C -0.048 4.048 19 N -0.376 5.376 20 C -0.127 4.127 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.085 0.915 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.725 -4.897 0.350 10.012 hybrid contribution -0.445 1.330 0.836 1.633 sum 8.281 -3.567 1.186 9.094 Atomic orbital electron populations 1.70036 1.07781 1.27252 1.52720 1.25666 0.94952 1.01329 0.94575 0.86353 0.80098 0.81367 0.78550 1.20256 1.22004 1.17276 1.21357 0.91611 0.92965 1.47198 0.92714 1.20160 0.91985 0.94672 0.89714 0.95086 1.21760 0.97636 0.95368 0.93803 1.22569 1.00206 0.95269 0.96423 1.22388 1.01407 0.96890 0.94769 1.22025 1.00195 0.94508 0.98484 1.22127 0.99882 0.98097 0.95618 1.69067 1.43738 1.05885 1.01748 1.23785 0.99319 0.95158 0.92722 1.22880 0.92067 0.97102 0.92754 1.58666 1.43457 1.08313 1.27208 1.23701 0.99743 0.96264 0.92946 0.93031 0.92020 0.92120 0.93040 0.91871 0.90562 0.93552 0.90627 0.93703 0.92400 0.90610 0.91279 0.90235 0.83772 0.84066 0.91511 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.79 13.96 21.45 0.30 -56.49 16 2 C 0.03 1.87 5.01 84.65 0.42 2.29 16 3 Si 0.91 43.91 25.65 68.60 1.76 45.67 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.25 -11.39 6.18 99.48 0.61 -10.78 16 7 C -0.49 -25.80 4.43 25.60 0.11 -25.69 16 8 H 0.06 3.22 4.85 -2.91 -0.01 3.21 16 9 C 0.14 6.46 1.94 44.17 0.09 6.54 16 10 H 0.03 1.49 4.71 -2.38 -0.01 1.48 16 11 C -0.07 -2.64 2.91 -9.72 -0.03 -2.67 16 12 C -0.11 -3.98 4.68 32.01 0.15 -3.83 16 13 C -0.12 -3.62 6.84 31.79 0.22 -3.40 16 14 C -0.11 -3.78 6.80 31.31 0.21 -3.56 16 15 C -0.12 -4.64 6.20 31.32 0.19 -4.44 16 16 N -0.48 -19.94 6.37 -906.97 -5.77 -25.71 16 17 C 0.02 0.76 5.39 83.57 0.45 1.21 16 18 C 0.06 2.16 5.31 45.37 0.24 2.40 16 19 N -0.84 -26.42 9.61 -167.94 -1.61 -28.04 16 20 C 0.00 0.12 6.79 83.57 0.57 0.69 16 21 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 22 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.06 2.09 7.02 -2.39 -0.02 2.08 16 24 H 0.05 2.26 5.32 -2.38 -0.01 2.25 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.04 2.08 6.84 -2.39 -0.02 2.07 16 30 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.08 3.57 4.73 -2.38 -0.01 3.56 16 32 H 0.07 2.44 7.28 -2.38 -0.02 2.42 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.35 8.85 9.08 -89.69 -0.81 8.04 16 35 H 0.35 9.63 9.07 -89.69 -0.81 8.81 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 37 H 0.06 2.94 5.03 -2.39 -0.01 2.93 16 Total: -1.00 -60.80 269.65 -3.34 -64.14 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.64 Total: 30.89 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 2.63 Total: -30.46 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -7.09 Total: -110.24 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.76 Total: 45.67 kcal Total: -60.80 -3.34 -64.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.773 kcal (2) G-P(sol) polarization free energy of solvation -60.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds