Wall clock time and date at job start Mon Mar 30 2020 03:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99978 * 2 1 4 4 H 1.48496 * 109.47156 * 269.99700 * 3 2 1 5 5 H 1.48496 * 109.47125 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.46909 * 149.99567 * 3 2 1 7 7 C 1.37878 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99725 * 173.55698 * 7 2 1 9 9 C 1.50703 * 119.99984 * 353.83591 * 7 2 1 10 10 H 1.09003 * 109.47007 * 358.05488 * 9 7 2 11 11 C 1.52997 * 109.46963 * 118.05010 * 9 7 2 12 12 C 1.54269 * 110.03101 * 57.44857 * 11 9 7 13 13 C 1.54885 * 104.19662 * 217.10273 * 12 11 9 14 14 C 1.54889 * 102.75125 * 37.93913 * 13 12 11 15 15 C 1.53868 * 110.03553 * 300.27940 * 11 9 7 16 16 N 1.46897 * 109.47130 * 238.05711 * 9 7 2 17 17 C 1.47477 * 110.99846 * 155.97254 * 16 9 7 18 18 C 1.53517 * 87.93019 * 221.29318 * 17 16 9 19 19 N 1.46904 * 114.16952 * 139.67152 * 18 17 16 20 20 C 1.47475 * 111.00218 * 59.99791 * 16 9 7 21 21 H 0.97006 * 120.00059 * 5.03632 * 1 2 3 22 22 H 1.09008 * 110.01571 * 178.88670 * 11 9 7 23 23 H 1.08996 * 110.48432 * 335.78184 * 12 11 9 24 24 H 1.08995 * 110.48409 * 98.42271 * 12 11 9 25 25 H 1.09005 * 110.75375 * 279.62910 * 13 12 11 26 26 H 1.08999 * 110.91765 * 156.33347 * 13 12 11 27 27 H 1.08992 * 110.49147 * 203.38363 * 14 13 12 28 28 H 1.08995 * 110.59819 * 80.78923 * 14 13 12 29 29 H 1.09001 * 110.03162 * 238.56816 * 15 11 9 30 30 H 1.08991 * 110.03661 * 359.97438 * 15 11 9 31 31 H 1.08999 * 113.47913 * 336.05761 * 17 16 9 32 32 H 1.09000 * 113.47777 * 106.53080 * 17 16 9 33 33 H 1.08997 * 114.16985 * 272.37947 * 18 17 16 34 34 H 1.00894 * 111.00017 * 86.16288 * 19 18 17 35 35 H 1.00900 * 110.99840 * 210.11499 * 19 18 17 36 36 H 1.08995 * 113.47800 * 253.47017 * 20 16 9 37 37 H 1.09006 * 113.47831 * 23.87809 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1970 -0.1044 9 6 1.2576 -2.4953 0.1413 10 1 0.1938 -2.2921 0.2648 11 6 1.4721 -3.3448 -1.1130 12 6 2.9794 -3.5865 -1.3360 13 6 3.1492 -3.5326 -2.8746 14 6 2.1731 -2.4030 -3.2869 15 6 0.9595 -2.5922 -2.3534 16 7 1.7569 -3.2220 1.3162 17 6 0.7410 -4.1606 1.8282 18 6 1.1378 -3.7290 3.2470 19 7 0.0034 -3.5699 4.1667 20 6 1.5662 -2.4318 2.5467 21 1 -0.4850 0.8368 -0.0737 22 1 0.9514 -4.2971 -1.0124 23 1 3.5662 -2.8012 -0.8596 24 1 3.2692 -4.5654 -0.9543 25 1 2.8579 -4.4797 -3.3288 26 1 4.1736 -3.2756 -3.1442 27 1 1.8745 -2.5181 -4.3288 28 1 2.6282 -1.4256 -3.1272 29 1 0.1905 -3.1797 -2.8551 30 1 0.5574 -1.6221 -2.0618 31 1 -0.2789 -3.8853 1.5599 32 1 0.9670 -5.2049 1.6128 33 1 1.9631 -4.2998 3.6727 34 1 -0.2374 -4.4489 4.5993 35 1 0.1982 -2.8657 4.8626 36 1 2.4914 -2.0110 2.9403 37 1 0.7671 -1.6945 2.4699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:13 Heat of formation + Delta-G solvation = 22.634157 kcal Electronic energy + Delta-G solvation = -16522.787198 eV Core-core repulsion = 14107.229622 eV Total energy + Delta-G solvation = -2415.557575 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.25352 -37.03493 -33.22298 -32.01173 -29.55191 -27.62917 -26.08596 -24.97840 -24.34931 -21.06832 -19.81410 -18.71906 -18.32361 -16.36464 -15.31885 -15.22349 -15.01744 -14.67438 -14.14978 -13.72706 -12.91996 -12.57891 -12.35564 -11.99725 -11.59500 -11.48253 -11.02308 -10.91440 -10.65373 -10.27344 -10.19529 -10.05551 -9.88812 -9.69957 -9.58996 -9.49013 -9.11411 -8.66814 -8.46972 -8.34303 -7.53972 -6.02117 -4.05194 3.28510 3.36642 3.40487 4.41053 4.84134 5.13786 5.20601 5.46423 5.63242 5.68390 5.71435 5.76552 6.19452 6.35070 6.41889 6.45302 6.47098 6.51876 6.61561 6.63497 6.75886 6.84247 6.86177 6.88403 6.98207 7.11081 7.22806 7.41653 7.50642 7.58724 7.63712 7.73934 7.82032 7.94024 8.35346 8.58096 9.09030 9.58930 11.04188 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.013519 C = 0.008994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.319534 B = 2070.634792 C = 3112.471657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.884 3.116 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.490 4.490 8 H 0.058 0.942 9 C 0.169 3.831 10 H 0.052 0.948 11 C -0.065 4.065 12 C -0.099 4.099 13 C -0.127 4.127 14 C -0.114 4.114 15 C -0.110 4.110 16 N -0.472 5.472 17 C 0.008 3.992 18 C 0.036 3.964 19 N -0.836 5.836 20 C 0.040 3.960 21 H 0.261 0.739 22 H 0.030 0.970 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.332 0.668 35 H 0.338 0.662 36 H 0.061 0.939 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 -5.733 1.742 6.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.134 4.134 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.529 4.529 8 H 0.077 0.923 9 C 0.062 3.938 10 H 0.070 0.930 11 C -0.085 4.085 12 C -0.136 4.136 13 C -0.164 4.164 14 C -0.152 4.152 15 C -0.148 4.148 16 N -0.196 5.196 17 C -0.122 4.122 18 C -0.075 4.075 19 N -0.366 5.366 20 C -0.089 4.089 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.080 0.920 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.122 -5.598 0.915 6.056 hybrid contribution 0.270 0.939 0.776 1.247 sum 2.392 -4.659 1.691 5.503 Atomic orbital electron populations 1.69886 1.05786 1.26863 1.50560 1.24966 0.94754 0.98981 0.94696 0.86711 0.80068 0.83873 0.78156 1.20718 1.21346 1.19853 1.20912 0.93626 0.89418 1.48941 0.92349 1.20166 0.96958 0.90985 0.85674 0.93029 1.21595 0.94488 0.96048 0.96348 1.22230 0.97762 1.00338 0.93267 1.22515 0.98141 0.97820 0.97966 1.22235 0.96916 0.98716 0.97298 1.22042 0.95852 1.02196 0.94675 1.68991 1.37423 1.10366 1.02824 1.23766 0.96942 0.98328 0.93134 1.23180 0.91466 1.00239 0.92641 1.58847 1.40985 1.12291 1.24470 1.23362 1.00198 0.94106 0.91243 0.92869 0.95117 0.90316 0.94040 0.93242 0.93202 0.93897 0.91799 0.94918 0.89046 0.91588 0.92242 0.92225 0.85674 0.84984 0.92037 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 12.39 55.43 0.69 -23.92 16 2 C 0.07 1.80 5.05 -17.82 -0.09 1.71 16 3 Si 0.88 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.49 -12.63 5.95 -34.44 -0.20 -12.84 16 8 H 0.06 1.56 6.41 -52.49 -0.34 1.22 16 9 C 0.17 4.05 1.15 -68.87 -0.08 3.97 16 10 H 0.05 1.42 6.31 -51.93 -0.33 1.10 16 11 C -0.07 -1.43 2.87 -89.51 -0.26 -1.69 16 12 C -0.10 -2.00 5.88 -25.07 -0.15 -2.14 16 13 C -0.13 -2.27 6.91 -24.74 -0.17 -2.44 16 14 C -0.11 -2.19 6.83 -25.07 -0.17 -2.36 16 15 C -0.11 -2.36 6.02 -25.61 -0.15 -2.52 16 16 N -0.47 -10.34 5.82 -238.01 -1.39 -11.73 16 17 C 0.01 0.16 7.31 -7.55 -0.06 0.11 16 18 C 0.04 0.63 5.31 -67.49 -0.36 0.27 16 19 N -0.84 -12.62 9.61 -4.43 -0.04 -12.66 16 20 C 0.04 0.85 6.67 -7.55 -0.05 0.80 16 21 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 22 H 0.03 0.66 8.04 -51.92 -0.42 0.24 16 23 H 0.08 1.76 5.90 -51.93 -0.31 1.45 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 2.27 6.53 -51.93 -0.34 1.93 16 31 H 0.07 1.41 7.54 -51.93 -0.39 1.02 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.33 4.14 9.08 -39.30 -0.36 3.78 16 35 H 0.34 4.59 9.07 -39.29 -0.36 4.23 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.91 7.89 -51.93 -0.41 1.50 16 LS Contribution 287.00 15.07 4.33 4.33 Total: -1.00 -26.86 287.00 -9.36 -36.22 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.18 Total: 9.04 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -1.74 Total: -17.12 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.74 Total: -48.31 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.86 -9.36 -36.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.855 kcal (2) G-P(sol) polarization free energy of solvation -26.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds